Wall clock time and date at job start Tue Mar 31 2020 08:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46882 * 2 1 4 4 N 1.46498 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.36839 * 119.99708 * 261.78368 * 4 3 2 6 6 H 1.08007 * 119.99774 * 196.19196 * 5 4 3 7 7 C 1.39046 * 120.00194 * 16.19259 * 5 4 3 8 8 N 1.31365 * 120.00373 * 12.31444 * 7 5 4 9 9 Si 1.86805 * 119.99949 * 192.31519 * 7 5 4 10 10 H 1.48506 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46898 * 119.99675 * 9 7 5 12 12 H 1.48498 * 109.47112 * 240.00104 * 9 7 5 13 13 C 1.34776 * 119.99842 * 81.78629 * 4 3 2 14 14 O 1.21677 * 119.99662 * 181.58257 * 13 4 3 15 15 C 1.47056 * 120.00131 * 1.57792 * 13 4 3 16 16 C 1.38243 * 126.75926 * 170.42763 * 15 13 4 17 17 C 1.40849 * 105.28229 * 179.89672 * 16 15 13 18 18 C 1.47907 * 126.23568 * 180.15206 * 17 16 15 19 19 C 1.35886 * 125.92863 * 179.97438 * 18 17 16 20 20 C 1.40986 * 106.74512 * 179.91195 * 19 18 17 21 21 C 1.34698 * 107.02299 * 0.35571 * 20 19 18 22 22 C 1.50700 * 125.67004 * 179.74062 * 21 20 19 23 23 O 1.34339 * 108.66322 * 359.78268 * 21 20 19 24 24 N 1.31825 * 107.53218 * 0.37331 * 17 16 15 25 25 N 1.28406 * 110.78880 * 359.76123 * 24 17 16 26 26 H 0.97003 * 125.04807 * 179.97438 * 25 24 17 27 27 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47266 * 300.00352 * 1 2 3 29 29 H 1.09000 * 109.47105 * 60.00037 * 1 2 3 30 30 H 1.08999 * 109.47097 * 240.00174 * 2 1 3 31 31 H 1.09004 * 109.46923 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.46717 * 59.99824 * 3 2 1 33 33 H 1.08995 * 109.46738 * 299.99354 * 3 2 1 34 34 H 0.96997 * 120.00508 * 180.02562 * 8 7 5 35 35 H 1.08000 * 127.35794 * 359.97438 * 16 15 13 36 36 H 1.08000 * 126.62908 * 0.02562 * 19 18 17 37 37 H 1.08002 * 126.49168 * 180.13622 * 20 19 18 38 38 H 1.08991 * 109.47330 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47337 * 300.02126 * 22 21 20 40 40 H 1.08998 * 109.46796 * 60.02086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1887 1.6121 1.1738 6 1 5.2366 1.8728 1.1553 7 6 3.5343 1.4486 2.3897 8 7 2.3405 0.9015 2.4249 9 14 4.3527 2.0070 3.9734 10 1 5.6843 2.5873 3.6645 11 1 3.5066 3.0342 4.6323 12 1 4.5176 0.8441 4.8821 13 6 4.1794 1.2756 -1.1543 14 8 5.3958 1.2467 -1.1498 15 6 3.4450 1.1282 -2.4199 16 6 3.9821 1.1349 -3.6936 17 6 2.8855 0.9594 -4.5599 18 6 2.9395 0.8939 -6.0365 19 6 1.8770 0.7239 -6.8665 20 6 2.3849 0.7237 -8.1817 21 6 3.7191 0.8839 -8.0892 22 6 4.6802 0.9382 -9.2487 23 8 4.0509 0.9864 -6.7914 24 7 1.8016 0.8690 -3.8151 25 7 2.0958 0.9636 -2.5688 26 1 1.4559 0.9245 -1.8408 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.8838 0.7878 3.2730 35 1 5.0209 1.2489 -3.9662 36 1 0.8431 0.6124 -6.5751 37 1 1.8130 0.6122 -9.0910 38 1 5.6945 1.0748 -8.8739 39 1 4.6234 0.0066 -9.8117 40 1 4.4178 1.7725 -9.8992 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193553356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:02 Heat of formation + Delta-G solvation = 68.283937 kcal Electronic energy + Delta-G solvation = -24553.985805 eV Core-core repulsion = 20952.024374 eV Total energy + Delta-G solvation = -3601.961431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.88418 -43.34738 -40.41379 -37.69890 -34.96481 -34.16661 -33.71970 -33.44720 -32.06223 -31.59424 -28.08283 -27.33674 -26.85025 -24.18509 -23.29007 -22.65686 -22.38807 -21.62718 -21.02374 -19.46317 -18.80659 -18.04051 -17.37287 -17.18606 -16.65337 -16.46213 -16.00230 -15.59609 -15.50397 -15.28966 -14.83630 -14.54082 -14.12224 -13.94922 -13.77201 -13.74454 -13.71544 -13.65268 -13.26183 -12.86037 -12.69363 -12.64753 -12.42305 -12.26200 -12.10400 -12.05474 -11.77047 -11.27195 -10.99415 -10.78781 -10.63158 -10.29625 -9.84993 -8.93327 -8.41405 -6.04435 0.11914 0.29542 1.37883 1.41570 1.43338 1.44743 1.55819 1.99897 2.03242 2.21234 2.25859 2.73080 2.99874 3.36899 3.59160 3.78312 3.87696 3.99585 4.10218 4.20634 4.25464 4.31716 4.50406 4.58711 4.63811 4.78610 4.80620 4.84255 4.89061 5.00233 5.07081 5.18731 5.20411 5.28849 5.33359 5.41236 5.62457 5.69102 5.75356 5.94897 6.17908 6.34313 6.75303 6.97726 7.18844 7.74979 8.53277 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.003459 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.069012 B = 8092.135099 C = 8982.439988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.104 3.896 4 N -0.429 5.429 5 C -0.343 4.343 6 H 0.081 0.919 7 C 0.008 3.992 8 N -0.864 5.864 9 Si 0.996 3.004 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.273 1.273 13 C 0.483 3.517 14 O -0.617 6.617 15 C -0.005 4.005 16 C -0.174 4.174 17 C 0.089 3.911 18 C 0.033 3.967 19 C -0.168 4.168 20 C -0.216 4.216 21 C -0.010 4.010 22 C -0.072 4.072 23 O -0.186 6.186 24 N -0.262 5.262 25 N -0.372 5.372 26 H 0.461 0.539 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.048 0.952 34 H 0.281 0.719 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.306 -0.405 -14.809 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C -0.019 4.019 4 N -0.144 5.144 5 C -0.470 4.470 6 H 0.099 0.901 7 C -0.196 4.196 8 N -0.502 5.502 9 Si 0.819 3.181 10 H -0.203 1.203 11 H -0.188 1.188 12 H -0.199 1.199 13 C 0.272 3.728 14 O -0.504 6.504 15 C -0.133 4.133 16 C -0.203 4.203 17 C -0.066 4.066 18 C -0.018 4.018 19 C -0.189 4.189 20 C -0.234 4.234 21 C -0.061 4.061 22 C -0.128 4.128 23 O -0.083 6.083 24 N -0.098 5.098 25 N -0.102 5.102 26 H 0.322 0.678 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.751 -0.553 -14.494 15.999 hybrid contribution 0.967 0.212 1.502 1.799 sum -5.784 -0.341 -12.991 14.225 Atomic orbital electron populations 1.21659 0.92970 1.02732 1.02226 1.22075 0.97634 0.96038 1.01805 1.22121 0.79516 0.98509 1.01802 1.43891 1.06505 1.58286 1.05728 1.19814 0.96583 1.47489 0.83132 0.90144 1.26048 0.97008 0.95019 1.01528 1.69997 1.13719 1.38182 1.28270 0.84832 0.78218 0.78314 0.76707 1.20300 1.18797 1.19862 1.17137 0.86797 0.86027 0.82849 1.90612 1.14136 1.59225 1.86385 1.21850 0.85095 1.10005 0.96385 1.22124 1.00679 1.08010 0.89464 1.18874 0.89717 1.07891 0.90157 1.18610 0.85146 1.10730 0.87337 1.22038 0.99627 1.04645 0.92583 1.21851 0.93819 1.09268 0.98510 1.23498 0.96878 1.03390 0.82338 1.20564 0.96302 1.05588 0.90393 1.83987 1.34400 1.71657 1.18237 1.73155 1.25289 1.20794 0.90539 1.45454 1.06883 1.51609 1.06296 0.67844 0.91310 0.91429 0.92422 0.95250 0.89354 0.86506 0.93498 0.90835 0.82087 0.82033 0.79925 0.90508 0.87376 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.78 71.98 0.70 -3.24 16 2 C -0.14 -5.20 4.66 30.60 0.14 -5.06 16 3 C 0.10 4.36 4.10 86.38 0.35 4.71 16 4 N -0.43 -21.90 2.64 -639.66 -1.69 -23.59 16 5 C -0.34 -18.59 9.40 84.11 0.79 -17.80 16 6 H 0.08 4.73 7.32 -2.91 -0.02 4.71 16 7 C 0.01 0.38 5.12 84.96 0.44 0.82 16 8 N -0.86 -39.51 8.19 21.68 0.18 -39.33 16 9 Si 1.00 39.30 29.57 68.60 2.03 41.33 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 13 C 0.48 25.53 7.54 86.56 0.65 26.18 16 14 O -0.62 -36.90 16.57 -4.27 -0.07 -36.97 16 15 C -0.01 -0.23 6.50 40.70 0.26 0.04 16 16 C -0.17 -7.33 10.83 22.91 0.25 -7.08 16 17 C 0.09 3.38 7.09 42.35 0.30 3.68 16 18 C 0.03 1.08 7.19 24.29 0.17 1.25 16 19 C -0.17 -4.54 10.82 22.40 0.24 -4.29 16 20 C -0.22 -4.56 10.78 22.13 0.24 -4.33 16 21 C -0.01 -0.23 7.32 24.87 0.18 -0.04 16 22 C -0.07 -0.88 10.41 71.24 0.74 -0.14 16 23 O -0.19 -5.77 10.67 -6.46 -0.07 -5.84 16 24 N -0.26 -9.72 12.15 -48.44 -0.59 -10.31 16 25 N -0.37 -14.36 5.07 -48.09 -0.24 -14.60 16 26 H 0.46 16.22 2.68 -220.02 -0.59 15.63 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.42 7.47 -2.39 -0.02 1.40 16 30 H 0.03 1.14 6.36 -2.39 -0.02 1.12 16 31 H 0.09 3.90 6.30 -2.39 -0.02 3.88 16 32 H 0.12 5.13 5.84 -2.39 -0.01 5.11 16 33 H 0.05 1.80 5.19 -2.39 -0.01 1.79 16 34 H 0.28 11.87 8.31 -92.71 -0.77 11.10 16 35 H 0.16 6.63 8.06 -2.91 -0.02 6.61 16 36 H 0.16 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -65.77 332.08 5.51 -60.25 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.50 Total: 34.35 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.47 Total: -5.30 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.34 Total: -87.83 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.14 Total: -42.81 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -65.77 5.51 -60.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193553356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.538 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds