Wall clock time and date at job start Tue Mar 31 2020 09:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47365 * 2 1 4 4 C 1.50707 * 109.46862 * 119.99947 * 2 1 3 5 5 H 1.08002 * 119.99595 * 119.99726 * 4 2 1 6 6 C 1.37871 * 119.99890 * 299.99760 * 4 2 1 7 7 N 1.31507 * 120.00263 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00016 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47090 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47581 * 119.99605 * 8 6 4 11 11 H 1.48501 * 109.47071 * 239.99935 * 8 6 4 12 12 N 1.46500 * 109.47062 * 239.99481 * 2 1 3 13 13 C 1.34776 * 119.99995 * 85.00183 * 12 2 1 14 14 O 1.21595 * 119.99558 * 359.97438 * 13 12 2 15 15 N 1.34771 * 120.00277 * 180.02562 * 13 12 2 16 16 C 1.40116 * 119.99850 * 185.31462 * 15 13 12 17 17 C 1.38892 * 120.15654 * 213.02289 * 16 15 13 18 18 C 1.37860 * 120.29747 * 179.72633 * 17 16 15 19 19 C 1.39376 * 120.22676 * 0.22702 * 18 17 16 20 20 C 1.38897 * 119.06447 * 0.02604 * 19 18 17 21 21 C 1.37638 * 120.86990 * 359.97438 * 20 19 18 22 22 C 1.51145 * 106.35914 * 179.97438 * 20 19 18 23 23 C 1.51386 * 104.09841 * 359.97438 * 22 20 19 24 24 O 1.21293 * 126.42936 * 180.02562 * 23 22 20 25 25 N 1.34361 * 107.12843 * 0.02562 * 23 22 20 26 26 C 1.46504 * 123.88273 * 180.02562 * 25 23 22 27 27 H 1.09004 * 109.47006 * 60.00033 * 1 2 3 28 28 H 1.08997 * 109.47644 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47426 * 300.00357 * 1 2 3 30 30 H 0.97006 * 120.00652 * 179.97438 * 7 6 4 31 31 H 0.97003 * 120.00511 * 265.00774 * 12 2 1 32 32 H 0.96998 * 120.00291 * 5.30734 * 15 13 12 33 33 H 1.07999 * 119.84352 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.88579 * 180.25126 * 18 17 16 35 35 H 1.08002 * 120.06748 * 179.97438 * 21 20 19 36 36 H 1.09005 * 110.50535 * 241.34711 * 22 20 19 37 37 H 1.08999 * 110.50730 * 118.65342 * 22 20 19 38 38 H 1.08997 * 109.47282 * 269.97347 * 26 25 23 39 39 H 1.08998 * 109.47313 * 29.97533 * 26 25 23 40 40 H 1.09005 * 109.46775 * 149.97408 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6039 10 1 3.1472 -0.1858 4.8161 11 1 1.1676 -1.5864 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8574 1.1612 -2.4118 15 7 2.5957 -0.6540 -3.4576 16 6 2.8356 0.0677 -4.6345 17 6 2.6255 -0.5263 -5.8723 18 6 2.8551 0.1829 -7.0320 19 6 3.3047 1.5007 -6.9711 20 6 3.5170 2.0846 -5.7289 21 6 3.2888 1.3797 -4.5689 22 6 3.9947 3.4934 -5.9966 23 6 4.0142 3.5953 -7.5069 24 8 4.3387 4.5650 -8.1592 25 7 3.6045 2.4099 -7.9889 26 6 3.4866 2.1056 -9.4171 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.7089 1.1615 3.4844 31 1 2.2489 -1.6319 -1.1526 32 1 2.7528 -1.6109 -3.4350 33 1 2.2768 -1.5470 -5.9263 34 1 2.6857 -0.2843 -7.9909 35 1 3.4585 1.8463 -3.6098 36 1 4.9958 3.6406 -5.5914 37 1 3.3000 4.2190 -5.5735 38 1 2.4849 2.3619 -9.7618 39 1 4.2221 2.6859 -9.9742 40 1 3.6653 1.0424 -9.5779 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194119521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:46 Heat of formation + Delta-G solvation = -20.594114 kcal Electronic energy + Delta-G solvation = -23836.449339 eV Core-core repulsion = 20230.633866 eV Total energy + Delta-G solvation = -3605.815472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.59560 -39.93474 -38.27113 -36.35030 -34.86550 -33.93716 -32.97715 -32.38194 -29.82347 -28.78852 -27.63336 -26.62847 -25.28992 -23.04369 -21.98707 -21.10846 -20.38116 -19.87465 -18.29875 -17.55496 -17.24056 -16.48587 -16.41759 -15.99508 -15.12080 -14.93276 -14.60038 -14.26615 -13.97821 -13.89196 -13.86417 -13.31338 -13.15830 -13.13270 -12.91080 -12.61226 -12.44042 -12.33432 -11.81160 -11.28683 -11.12661 -11.05726 -10.85922 -10.68630 -10.33469 -10.27720 -10.26958 -9.56860 -9.40819 -9.07756 -8.87888 -8.60903 -8.04605 -7.47868 -6.16626 -4.25992 1.08835 1.28108 2.31540 2.57542 3.08721 3.21104 3.29533 3.31955 3.53237 3.92828 4.04260 4.26299 4.31078 4.69115 4.80309 4.91562 4.98527 5.04435 5.16358 5.18567 5.25474 5.29450 5.33149 5.58492 5.86821 5.89205 5.95337 6.31006 6.43757 6.52141 6.75480 6.78022 6.93455 7.07244 7.10662 7.18639 7.40118 7.58273 7.74429 7.78334 7.94364 8.11003 8.67638 8.79493 9.17173 9.42441 10.89434 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.002743 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.798091 B =10204.037013 C =10650.748542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.718 5.718 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.694 5.694 16 C 0.169 3.831 17 C -0.123 4.123 18 C -0.113 4.113 19 C 0.108 3.892 20 C -0.117 4.117 21 C -0.070 4.070 22 C -0.114 4.114 23 C 0.526 3.474 24 O -0.512 6.512 25 N -0.552 5.552 26 C 0.080 3.920 27 H 0.015 0.985 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.404 0.596 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -4.002 -19.160 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.178 3.822 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.369 5.369 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.343 5.343 16 C 0.072 3.928 17 C -0.145 4.145 18 C -0.135 4.135 19 C 0.013 3.987 20 C -0.120 4.120 21 C -0.091 4.091 22 C -0.153 4.153 23 C 0.316 3.684 24 O -0.388 6.388 25 N -0.275 5.275 26 C -0.062 4.062 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.239 0.761 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.590 -2.222 -19.399 20.058 hybrid contribution 0.303 -1.540 0.801 1.762 sum 4.893 -3.762 -18.598 19.596 Atomic orbital electron populations 1.22111 0.98530 0.99120 1.00992 1.18699 0.90868 0.93762 0.78830 0.93206 1.21234 1.32511 1.13292 0.90210 0.92005 1.24879 0.94801 0.94960 0.99062 1.69909 1.35811 1.22386 1.23866 0.86382 0.78602 0.79495 0.82528 1.19761 1.20848 1.20869 1.45885 1.68494 1.13440 1.09056 1.16176 0.78619 0.85597 0.80417 1.90897 1.56571 1.14336 1.84065 1.42842 1.70234 1.11322 1.09857 1.17311 0.97945 0.92257 0.85267 1.20546 1.03003 1.00811 0.90131 1.19986 1.03652 0.91294 0.98555 1.18085 1.01995 0.91532 0.87135 1.19575 1.04553 0.95639 0.92282 1.20347 0.97201 0.93350 0.98183 1.21057 1.05191 0.95789 0.93214 1.20663 0.75590 0.81408 0.90755 1.90765 1.48333 1.33136 1.66567 1.45687 1.62598 1.12836 1.06404 1.21777 1.02863 1.02355 0.79192 0.96551 0.95504 0.89082 0.92558 0.78117 0.76132 0.85001 0.85657 0.83536 0.85880 0.85680 0.91722 0.90058 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 2 C 0.28 6.87 2.56 -69.08 -0.18 6.69 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.67 8.73 -34.44 -0.30 -13.97 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -24.31 11.32 55.43 0.63 -23.69 16 8 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.72 -14.05 5.07 -59.81 -0.30 -14.36 16 13 C 0.69 13.08 8.27 -86.92 -0.72 12.36 16 14 O -0.58 -13.23 13.70 5.28 0.07 -13.16 16 15 N -0.69 -9.58 5.36 -14.15 -0.08 -9.65 16 16 C 0.17 2.26 6.29 -83.56 -0.53 1.74 16 17 C -0.12 -1.27 9.94 -39.48 -0.39 -1.66 16 18 C -0.11 -1.11 9.73 -39.30 -0.38 -1.49 16 19 C 0.11 1.24 6.70 -83.59 -0.56 0.68 16 20 C -0.12 -1.48 6.34 -104.38 -0.66 -2.15 16 21 C -0.07 -1.01 8.65 -39.53 -0.34 -1.35 16 22 C -0.11 -1.27 6.87 -28.48 -0.20 -1.47 16 23 C 0.53 6.69 8.23 -10.83 -0.09 6.60 16 24 O -0.51 -7.90 17.67 5.55 0.10 -7.80 16 25 N -0.55 -6.11 3.14 -120.56 -0.38 -6.49 16 26 C 0.08 0.62 10.77 59.85 0.64 1.27 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.37 8.56 -40.82 -0.35 6.02 16 32 H 0.40 4.09 8.84 -40.82 -0.36 3.73 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.88 7.69 -52.48 -0.40 0.47 16 35 H 0.15 2.45 6.43 -52.49 -0.34 2.11 16 36 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.13 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16 40 H 0.08 0.43 7.61 -51.93 -0.40 0.04 16 LS Contribution 340.31 15.07 5.13 5.13 Total: -1.00 -32.53 340.31 -8.35 -40.88 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.05 Total: 8.41 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.45 Total: 5.62 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.13 Total: -54.18 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.53 -8.35 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194119521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.286 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds