Wall clock time and date at job start Tue Mar 31 2020 09:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47233 * 2 1 4 4 C 1.50701 * 109.47499 * 239.99743 * 2 1 3 5 5 H 1.07994 * 120.00011 * 240.00223 * 4 2 1 6 6 C 1.37874 * 119.99723 * 60.27681 * 4 2 1 7 7 N 1.31519 * 120.00295 * 359.72777 * 6 4 2 8 8 Si 1.86801 * 120.00029 * 179.72393 * 6 4 2 9 9 H 1.48497 * 109.46877 * 89.99851 * 8 6 4 10 10 H 1.48491 * 109.47425 * 209.99985 * 8 6 4 11 11 H 1.48498 * 109.47085 * 330.00329 * 8 6 4 12 12 N 1.46506 * 109.46978 * 119.99837 * 2 1 3 13 13 C 1.34782 * 119.99614 * 275.00120 * 12 2 1 14 14 O 1.21589 * 120.00424 * 359.97438 * 13 12 2 15 15 C 1.47585 * 119.99597 * 179.97438 * 13 12 2 16 16 C 1.39755 * 120.07403 * 359.72645 * 15 13 12 17 17 C 1.37666 * 119.92415 * 179.70035 * 16 15 13 18 18 C 1.39131 * 120.07500 * 0.57277 * 17 16 15 19 19 N 1.39431 * 119.92991 * 179.74330 * 18 17 16 20 20 C 1.47053 * 125.41137 * 174.19221 * 19 18 17 21 21 C 1.54108 * 103.85829 * 180.02562 * 20 19 18 22 22 N 1.47047 * 103.86575 * 0.02562 * 21 20 19 23 23 C 1.33946 * 125.40627 * 353.89287 * 19 18 17 24 24 O 1.21581 * 123.04246 * 359.97438 * 23 19 18 25 25 C 1.39138 * 120.14592 * 359.72350 * 18 17 16 26 26 C 1.37662 * 120.07721 * 359.97438 * 25 18 17 27 27 H 1.09001 * 109.47738 * 300.00405 * 1 2 3 28 28 H 1.09004 * 109.46710 * 60.00036 * 1 2 3 29 29 H 1.08994 * 109.47346 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00179 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00320 * 95.00019 * 12 2 1 32 32 H 1.07998 * 120.03802 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.96156 * 180.27982 * 17 16 15 34 34 H 1.09002 * 110.54764 * 298.59428 * 20 19 18 35 35 H 1.08994 * 110.54607 * 61.26792 * 20 19 18 36 36 H 1.08996 * 110.54593 * 118.59947 * 21 20 19 37 37 H 1.09001 * 110.54479 * 241.40332 * 21 20 19 38 38 H 0.96997 * 125.41078 * 180.02562 * 22 21 20 39 39 H 1.07995 * 119.96140 * 179.97438 * 25 18 17 40 40 H 1.08001 * 120.03816 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.7040 -0.2361 -2.4826 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0078 9 1 1.3571 -2.1532 -4.4187 10 1 2.5021 -0.1300 -5.1086 11 1 3.6404 -1.7500 -3.7085 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8582 1.1617 2.4117 15 6 2.6383 -0.7140 3.5624 16 6 2.9652 -2.0714 3.5030 17 6 3.4291 -2.7160 4.6275 18 6 3.5614 -2.0204 5.8252 19 7 4.0265 -2.6775 6.9636 20 6 4.3264 -2.0384 8.2536 21 6 4.7978 -3.2054 9.1429 22 7 4.7139 -4.3779 8.2595 23 6 4.2657 -3.9921 7.0576 24 8 4.0959 -4.7645 6.1341 25 6 3.2310 -0.6703 5.8893 26 6 2.7724 -0.0182 4.7670 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7167 1.1667 -3.4844 31 1 2.2490 -1.6318 1.1528 32 1 2.8582 -2.6132 2.5748 33 1 3.6862 -3.7639 4.5811 34 1 5.1202 -1.3001 8.1393 35 1 3.4312 -1.5753 8.6684 36 1 5.8251 -3.0461 9.4703 37 1 4.1359 -3.3241 10.0008 38 1 4.9417 -5.2871 8.5091 39 1 3.3344 -0.1334 6.8206 40 1 2.5157 1.0296 4.8177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194715137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:27 Heat of formation + Delta-G solvation = -16.127708 kcal Electronic energy + Delta-G solvation = -23793.929979 eV Core-core repulsion = 20188.308184 eV Total energy + Delta-G solvation = -3605.621794 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.84616 -39.53273 -37.90032 -36.91488 -34.80415 -34.47653 -32.41956 -30.95397 -30.36169 -29.27866 -28.34701 -25.21845 -24.41313 -24.02314 -21.90014 -21.59160 -20.53070 -19.38938 -18.39211 -17.83146 -17.18227 -17.03759 -15.97044 -15.76272 -15.14091 -14.75783 -14.56886 -14.35185 -14.25390 -14.10771 -13.91265 -13.54453 -13.42116 -13.21360 -12.78181 -12.40890 -12.34266 -12.25438 -11.62566 -11.29995 -11.06428 -10.91389 -10.70927 -10.39568 -10.27533 -10.19319 -10.13225 -9.68798 -9.06128 -8.98813 -8.96677 -8.51411 -8.05903 -7.77294 -6.08115 -4.17126 1.00039 1.45794 2.00999 2.66902 3.28168 3.32290 3.34724 3.37437 3.42172 3.76799 4.14107 4.24274 4.34464 4.38602 4.43090 4.78579 4.85564 4.91183 5.09256 5.20474 5.24177 5.36526 5.44156 5.48727 5.67839 6.06968 6.26923 6.32496 6.43849 6.55809 6.64354 6.88445 6.97135 7.02626 7.07796 7.20367 7.50600 7.62003 7.74811 7.96812 8.08597 8.19374 8.71667 8.82750 9.16827 9.50321 10.97960 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.002831 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.669900 B = 9886.651907 C =10654.983934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.703 5.703 13 C 0.544 3.456 14 O -0.555 6.555 15 C -0.147 4.147 16 C -0.057 4.057 17 C -0.163 4.163 18 C 0.198 3.802 19 N -0.568 5.568 20 C 0.083 3.917 21 C 0.093 3.907 22 N -0.738 5.738 23 C 0.698 3.302 24 O -0.562 6.562 25 C -0.170 4.170 26 C -0.035 4.035 27 H 0.015 0.985 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.433 0.567 39 H 0.127 0.873 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -7.627 25.669 27.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.330 3.670 14 O -0.436 6.436 15 C -0.151 4.151 16 C -0.076 4.076 17 C -0.183 4.183 18 C 0.104 3.896 19 N -0.294 5.294 20 C -0.040 4.040 21 C -0.033 4.033 22 N -0.400 5.400 23 C 0.399 3.601 24 O -0.439 6.439 25 C -0.191 4.191 26 C -0.055 4.055 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.222 0.778 32 H 0.151 0.849 33 H 0.178 0.822 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.276 0.724 39 H 0.145 0.855 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.375 -7.014 24.985 26.979 hybrid contribution 0.535 -1.214 -0.533 1.430 sum 7.910 -8.228 24.452 26.985 Atomic orbital electron populations 1.22078 0.98388 0.99179 1.00924 1.18771 0.91080 0.94033 0.79883 0.93228 1.21227 1.32471 1.13136 0.90332 0.92041 1.24886 0.94851 0.94933 0.99042 1.69907 1.36000 1.22391 1.23838 0.86443 0.79220 0.79237 0.82183 1.20550 1.21092 1.19827 1.46494 1.64519 1.13571 1.10434 1.18146 0.78754 0.86748 0.83362 1.90718 1.51950 1.15675 1.85236 1.20311 1.05034 0.94410 0.95378 1.21305 0.94785 0.93261 0.98275 1.21524 1.03431 1.02769 0.90590 1.17558 0.96086 0.91471 0.84497 1.44394 1.65888 1.07419 1.11703 1.22610 1.02639 0.96520 0.82214 1.22403 1.02964 0.84035 0.93850 1.45095 1.71701 1.11194 1.12046 1.15861 0.78405 0.82169 0.83634 1.90892 1.58505 1.55011 1.39445 1.20573 1.06468 0.92369 0.99683 1.21020 0.93896 1.00266 0.90318 0.96569 0.89134 0.95429 0.92602 0.77827 0.84897 0.82238 0.88833 0.88880 0.89367 0.89418 0.72442 0.85488 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.26 37.15 0.34 -3.43 16 2 C 0.26 6.94 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.49 7.58 -51.92 -0.39 1.10 16 4 C -0.53 -14.49 8.73 -34.44 -0.30 -14.79 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.81 5.31 -17.82 -0.09 1.72 16 7 N -0.88 -25.32 11.33 55.43 0.63 -24.69 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.70 -15.51 5.02 -55.95 -0.28 -15.79 16 13 C 0.54 11.68 7.73 -12.44 -0.10 11.58 16 14 O -0.56 -13.81 16.00 5.29 0.08 -13.72 16 15 C -0.15 -2.51 5.88 -104.95 -0.62 -3.13 16 16 C -0.06 -0.86 9.53 -39.22 -0.37 -1.24 16 17 C -0.16 -2.36 9.26 -39.46 -0.37 -2.73 16 18 C 0.20 2.51 6.62 -83.74 -0.55 1.96 16 19 N -0.57 -5.77 3.14 -118.24 -0.37 -6.14 16 20 C 0.08 0.41 6.46 -3.16 -0.02 0.39 16 21 C 0.09 0.28 8.06 -3.17 -0.03 0.25 16 22 N -0.74 -4.80 6.37 -64.70 -0.41 -5.21 16 23 C 0.70 7.89 8.52 -88.39 -0.75 7.13 16 24 O -0.56 -8.60 14.73 5.29 0.08 -8.52 16 25 C -0.17 -1.99 9.46 -39.46 -0.37 -2.36 16 26 C -0.04 -0.52 9.58 -39.22 -0.38 -0.89 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 2.50 6.08 -51.93 -0.32 2.18 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.39 7.50 6.56 -40.82 -0.27 7.23 16 32 H 0.13 1.86 6.39 -52.49 -0.34 1.53 16 33 H 0.16 2.46 5.25 -52.49 -0.28 2.18 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.32 8.10 -51.93 -0.42 -0.10 16 36 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 37 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 38 H 0.43 2.01 8.96 -40.82 -0.37 1.64 16 39 H 0.13 1.05 7.26 -52.49 -0.38 0.67 16 40 H 0.14 2.02 7.64 -52.49 -0.40 1.62 16 LS Contribution 334.98 15.07 5.05 5.05 Total: -1.00 -35.58 334.98 -8.84 -44.42 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.81 Total: 7.35 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -3.78 Total: 1.22 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.44 Total: -51.83 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.16 Total: -22.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.58 -8.84 -44.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.293 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds