Wall clock time and date at job start Tue Mar 31 2020 09:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47233 * 2 1 4 4 C 1.50701 * 109.47499 * 239.99743 * 2 1 3 5 5 H 1.07994 * 120.00011 * 240.00223 * 4 2 1 6 6 C 1.37874 * 119.99723 * 60.27681 * 4 2 1 7 7 N 1.31519 * 120.00295 * 359.72777 * 6 4 2 8 8 Si 1.86801 * 120.00029 * 179.72393 * 6 4 2 9 9 H 1.48497 * 109.46877 * 89.99851 * 8 6 4 10 10 H 1.48491 * 109.47425 * 209.99985 * 8 6 4 11 11 H 1.48498 * 109.47085 * 330.00329 * 8 6 4 12 12 N 1.46506 * 109.46978 * 119.99837 * 2 1 3 13 13 C 1.34782 * 119.99614 * 275.00120 * 12 2 1 14 14 O 1.21589 * 120.00424 * 359.97438 * 13 12 2 15 15 C 1.47585 * 119.99597 * 179.97438 * 13 12 2 16 16 C 1.39755 * 120.07403 * 359.72645 * 15 13 12 17 17 C 1.37666 * 119.92415 * 179.70035 * 16 15 13 18 18 C 1.39131 * 120.07500 * 0.57277 * 17 16 15 19 19 N 1.39431 * 119.92991 * 179.74330 * 18 17 16 20 20 C 1.47053 * 125.41137 * 174.19221 * 19 18 17 21 21 C 1.54108 * 103.85829 * 180.02562 * 20 19 18 22 22 N 1.47047 * 103.86575 * 0.02562 * 21 20 19 23 23 C 1.33946 * 125.40627 * 353.89287 * 19 18 17 24 24 O 1.21581 * 123.04246 * 359.97438 * 23 19 18 25 25 C 1.39138 * 120.14592 * 359.72350 * 18 17 16 26 26 C 1.37662 * 120.07721 * 359.97438 * 25 18 17 27 27 H 1.09001 * 109.47738 * 300.00405 * 1 2 3 28 28 H 1.09004 * 109.46710 * 60.00036 * 1 2 3 29 29 H 1.08994 * 109.47346 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00179 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00320 * 95.00019 * 12 2 1 32 32 H 1.07998 * 120.03802 * 359.97438 * 16 15 13 33 33 H 1.07997 * 119.96156 * 180.27982 * 17 16 15 34 34 H 1.09002 * 110.54764 * 298.59428 * 20 19 18 35 35 H 1.08994 * 110.54607 * 61.26792 * 20 19 18 36 36 H 1.08996 * 110.54593 * 118.59947 * 21 20 19 37 37 H 1.09001 * 110.54479 * 241.40332 * 21 20 19 38 38 H 0.96997 * 125.41078 * 180.02562 * 22 21 20 39 39 H 1.07995 * 119.96140 * 179.97438 * 25 18 17 40 40 H 1.08001 * 120.03816 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.7040 -0.2361 -2.4826 7 7 0.9480 0.8332 -2.6034 8 14 2.3331 -1.1122 -4.0078 9 1 1.3571 -2.1532 -4.4187 10 1 2.5021 -0.1300 -5.1086 11 1 3.6404 -1.7500 -3.7085 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0181 2.3572 14 8 1.8582 1.1617 2.4117 15 6 2.6383 -0.7140 3.5624 16 6 2.9652 -2.0714 3.5030 17 6 3.4291 -2.7160 4.6275 18 6 3.5614 -2.0204 5.8252 19 7 4.0265 -2.6775 6.9636 20 6 4.3264 -2.0384 8.2536 21 6 4.7978 -3.2054 9.1429 22 7 4.7139 -4.3779 8.2595 23 6 4.2657 -3.9921 7.0576 24 8 4.0959 -4.7645 6.1341 25 6 3.2310 -0.6703 5.8893 26 6 2.7724 -0.0182 4.7670 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7167 1.1667 -3.4844 31 1 2.2490 -1.6318 1.1528 32 1 2.8582 -2.6132 2.5748 33 1 3.6862 -3.7639 4.5811 34 1 5.1202 -1.3001 8.1393 35 1 3.4312 -1.5753 8.6684 36 1 5.8251 -3.0461 9.4703 37 1 4.1359 -3.3241 10.0008 38 1 4.9417 -5.2871 8.5091 39 1 3.3344 -0.1334 6.8206 40 1 2.5157 1.0296 4.8177 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194715137.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:26 Heat of formation + Delta-G solvation = -42.494161 kcal Electronic energy + Delta-G solvation = -23795.073314 eV Core-core repulsion = 20188.308184 eV Total energy + Delta-G solvation = -3606.765130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57919 -40.97617 -39.25469 -37.72008 -36.73672 -35.37950 -34.35509 -32.15420 -31.58498 -30.27460 -29.62354 -27.35588 -25.54154 -24.74988 -23.14234 -22.78572 -21.78405 -21.00988 -19.50846 -19.09336 -17.95555 -17.73276 -17.69838 -17.25550 -16.64977 -15.98799 -15.80558 -15.64916 -15.41817 -15.04395 -14.88537 -14.83806 -14.46877 -14.37280 -14.26197 -13.77733 -13.48036 -13.15081 -13.12533 -12.99541 -12.84204 -12.72490 -12.39613 -12.28418 -12.14715 -11.34979 -11.15784 -11.10596 -10.80559 -10.59906 -10.24408 -10.05884 -9.80655 -8.92265 -8.18343 -6.36007 -0.18779 0.36517 1.30996 1.44333 1.45265 1.56077 1.70447 2.14789 2.34589 2.60954 2.85320 2.92575 3.11923 3.44873 3.62304 3.90851 3.92224 4.13368 4.15736 4.27213 4.43628 4.52722 4.66897 4.73415 4.83058 4.91200 4.91611 5.00822 5.07843 5.18775 5.31668 5.37689 5.42797 5.46301 5.59194 5.67824 5.88843 5.95123 6.08197 6.08566 6.32636 6.70735 6.92757 7.30175 7.33477 7.49539 8.88265 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027346 B = 0.002831 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.669900 B = 9886.651907 C =10654.983934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H 0.002 0.998 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.265 1.265 12 N -0.702 5.702 13 C 0.542 3.458 14 O -0.598 6.598 15 C -0.175 4.175 16 C -0.053 4.053 17 C -0.178 4.178 18 C 0.212 3.788 19 N -0.571 5.571 20 C 0.071 3.929 21 C 0.094 3.906 22 N -0.725 5.725 23 C 0.684 3.316 24 O -0.613 6.613 25 C -0.151 4.151 26 C -0.036 4.036 27 H 0.013 0.987 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.266 0.734 31 H 0.402 0.598 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.441 0.559 39 H 0.172 0.828 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.168 -8.791 28.526 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.588 4.588 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.190 1.190 12 N -0.350 5.350 13 C 0.331 3.669 14 O -0.482 6.482 15 C -0.180 4.180 16 C -0.072 4.072 17 C -0.199 4.199 18 C 0.115 3.885 19 N -0.296 5.296 20 C -0.050 4.050 21 C -0.030 4.030 22 N -0.386 5.386 23 C 0.385 3.615 24 O -0.494 6.494 25 C -0.172 4.172 26 C -0.055 4.055 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.285 0.715 39 H 0.190 0.810 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.800 -8.211 27.945 30.426 hybrid contribution 0.163 -0.875 -1.200 1.494 sum 8.963 -9.086 26.745 29.634 Atomic orbital electron populations 1.21903 0.98146 0.99479 0.99720 1.18395 0.91253 0.92005 0.81659 0.98055 1.21532 1.32834 1.13533 0.90867 0.91075 1.25806 0.94859 0.95556 1.02286 1.70051 1.36948 1.23767 1.24686 0.85316 0.78933 0.78052 0.77866 1.19577 1.20944 1.18976 1.46264 1.64848 1.14147 1.09773 1.18804 0.77537 0.86337 0.84177 1.90677 1.53868 1.17611 1.86009 1.19951 1.08529 0.95117 0.94356 1.21263 0.94561 0.92509 0.98910 1.21498 1.04395 1.02508 0.91458 1.17679 0.94174 0.91820 0.84823 1.44534 1.64946 1.07543 1.12607 1.23133 1.04494 0.97578 0.79812 1.22757 1.05345 0.81484 0.93374 1.45125 1.69776 1.12755 1.10969 1.16255 0.78587 0.82270 0.84391 1.90854 1.60614 1.56346 1.41539 1.20826 1.04371 0.91784 1.00198 1.21137 0.93719 1.00312 0.90349 0.96803 0.91195 0.94188 0.92438 0.76239 0.84653 0.83253 0.86871 0.86702 0.86687 0.86663 0.71491 0.81028 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 2 C 0.27 14.83 2.56 44.24 0.11 14.94 16 3 H 0.00 0.10 7.58 -2.38 -0.02 0.08 16 4 C -0.55 -30.44 8.73 25.60 0.22 -30.21 16 5 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.02 0.83 5.31 84.65 0.45 1.28 16 7 N -0.92 -53.84 11.33 21.45 0.24 -53.60 16 8 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 N -0.70 -32.19 5.02 -449.20 -2.25 -34.44 16 13 C 0.54 24.26 7.73 86.71 0.67 24.93 16 14 O -0.60 -31.25 16.00 -3.99 -0.06 -31.31 16 15 C -0.18 -6.07 5.88 -20.08 -0.12 -6.19 16 16 C -0.05 -1.63 9.53 22.50 0.21 -1.42 16 17 C -0.18 -5.12 9.26 22.35 0.21 -4.91 16 18 C 0.21 4.93 6.62 38.36 0.25 5.18 16 19 N -0.57 -9.95 3.14 -646.73 -2.03 -11.98 16 20 C 0.07 0.35 6.46 86.65 0.56 0.91 16 21 C 0.09 0.10 8.06 86.65 0.70 0.80 16 22 N -0.72 -7.23 6.37 -477.35 -3.04 -10.27 16 23 C 0.68 14.22 8.52 179.57 1.53 15.75 16 24 O -0.61 -18.72 14.73 -3.97 -0.06 -18.78 16 25 C -0.15 -3.09 9.46 22.35 0.21 -2.88 16 26 C -0.04 -1.01 9.58 22.50 0.22 -0.79 16 27 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 4.01 6.08 -2.38 -0.01 4.00 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.40 15.98 6.56 -92.71 -0.61 15.37 16 32 H 0.14 3.92 6.39 -2.91 -0.02 3.90 16 33 H 0.15 4.71 5.25 -2.91 -0.02 4.70 16 34 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 35 H 0.11 0.14 8.10 -2.39 -0.02 0.12 16 36 H 0.12 -0.39 8.14 -2.39 -0.02 -0.40 16 37 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H 0.44 2.97 8.96 -92.71 -0.83 2.14 16 39 H 0.17 1.94 7.26 -2.91 -0.02 1.92 16 40 H 0.14 3.94 7.64 -2.91 -0.02 3.92 16 Total: -1.00 -82.06 334.98 0.38 -81.68 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.34 Total: 22.42 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.89 Total: 10.94 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -7.09 Total: -110.30 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.12 Total: -50.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -82.06 0.38 -81.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194715137.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.188 kcal (2) G-P(sol) polarization free energy of solvation -82.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds