Wall clock time and date at job start Tue Mar 31 2020 07:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52993 * 109.47687 * 239.99604 * 2 1 3 5 5 C 1.50707 * 109.46957 * 60.00051 * 4 2 1 6 6 H 1.07997 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00187 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46879 * 90.00031 * 9 7 5 11 11 H 1.48493 * 109.47222 * 210.00010 * 9 7 5 12 12 H 1.48496 * 109.46780 * 330.00160 * 9 7 5 13 13 C 1.53001 * 109.47041 * 119.99536 * 2 1 3 14 14 N 1.46502 * 109.47415 * 300.00369 * 13 2 1 15 15 C 1.39027 * 120.00102 * 179.97438 * 14 13 2 16 16 C 1.38879 * 120.17147 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.06725 * 179.97438 * 16 15 14 18 18 C 1.38570 * 120.42343 * 359.97438 * 17 16 15 19 19 N 1.48019 * 119.82625 * 180.02562 * 18 17 16 20 20 O 1.21792 * 120.00041 * 0.02562 * 19 18 17 21 21 O 1.21795 * 119.99844 * 179.97438 * 19 18 17 22 22 C 1.37798 * 120.34472 * 0.04633 * 18 17 16 23 23 C 1.39733 * 119.91912 * 359.93215 * 22 18 17 24 24 C 1.43201 * 120.20455 * 180.31598 * 23 22 18 25 25 N 5.39005 * 72.97857 * 64.13748 * 2 1 3 26 26 H 1.08997 * 109.47185 * 300.00085 * 1 2 3 27 27 H 1.08996 * 109.46713 * 60.00652 * 1 2 3 28 28 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46896 * 299.99236 * 3 2 1 31 31 H 1.08997 * 109.47261 * 59.99962 * 3 2 1 32 32 H 1.09001 * 109.47590 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47410 * 300.00322 * 4 2 1 34 34 H 0.97005 * 119.99592 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47091 * 180.02562 * 13 2 1 36 36 H 1.09002 * 109.46957 * 60.00057 * 13 2 1 37 37 H 0.97008 * 119.99688 * 359.97438 * 14 13 2 38 38 H 1.07991 * 119.96874 * 359.97438 * 16 15 14 39 39 H 1.08003 * 119.78755 * 180.02562 * 17 16 15 40 40 H 1.07993 * 120.03986 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 2.6267 -1.5516 -3.8524 9 14 1.2474 0.3978 -5.2572 10 1 2.2254 1.4394 -5.6620 11 1 1.0821 -0.5817 -6.3610 12 1 -0.0607 1.0353 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8870 -0.5058 3.7082 16 6 2.6853 -1.6346 3.8398 17 6 3.0174 -2.1042 5.0945 18 6 2.5595 -1.4558 6.2303 19 7 2.9242 -1.9706 7.5694 20 8 3.6254 -2.9612 7.6707 21 8 2.5239 -1.4028 8.5698 22 6 1.7661 -0.3346 6.1198 23 6 1.4215 0.1535 4.8566 24 6 0.6029 1.3221 4.7346 25 7 -0.0478 2.2482 4.6377 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1301 -0.7217 -1.2488 33 1 1.6768 -1.7490 -1.2491 34 1 2.8605 -1.8834 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2494 37 1 0.9941 0.7584 2.3564 38 1 3.0465 -2.1454 2.9596 39 1 3.6388 -2.9822 5.1916 40 1 1.4116 0.1666 7.0082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229688225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:45 Heat of formation + Delta-G solvation = 33.529459 kcal Electronic energy + Delta-G solvation = -23689.937635 eV Core-core repulsion = 20086.469137 eV Total energy + Delta-G solvation = -3603.468498 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21841 -40.41630 -38.00103 -36.79967 -36.58130 -35.05286 -32.57635 -32.05618 -30.60794 -27.42370 -26.93640 -26.78375 -25.48979 -24.61214 -23.25760 -21.88571 -20.40786 -19.00633 -18.50582 -17.77782 -17.56442 -17.41116 -16.71018 -16.22792 -15.18305 -14.90324 -14.64072 -14.54117 -14.29607 -13.92906 -13.57839 -13.38647 -13.20737 -13.04318 -12.87290 -12.61478 -12.24915 -12.00207 -11.60990 -11.59659 -11.26405 -11.20928 -11.20365 -11.02189 -10.91904 -10.75726 -10.70014 -10.44858 -10.09670 -9.77082 -9.47808 -9.16507 -8.52761 -8.21752 -6.17385 -4.19270 -0.18124 0.24170 1.23502 1.32354 2.28557 2.45415 2.82304 3.20024 3.26713 3.27978 3.29532 3.38442 4.05575 4.29304 4.31597 4.48456 4.56787 4.98559 5.07374 5.14834 5.16551 5.22394 5.35690 5.40720 5.47794 5.71653 5.79721 5.81202 5.92315 6.04790 6.28629 6.34603 6.37543 6.57730 6.76775 6.81064 6.85590 7.02109 7.13650 7.38996 7.49395 7.59270 7.79875 8.20376 8.84743 9.45354 10.93865 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.002860 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.346550 B = 9786.493398 C =10680.479430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 C -0.130 4.130 4 C 0.038 3.962 5 C -0.516 4.516 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.112 3.888 14 N -0.697 5.697 15 C 0.314 3.686 16 C -0.194 4.194 17 C 0.020 3.980 18 C -0.120 4.120 19 N 0.044 4.956 20 O -0.172 6.172 21 O -0.180 6.180 22 C 0.049 3.951 23 C -0.120 4.120 24 C 0.254 3.746 25 N -0.405 5.405 26 H 0.026 0.974 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.262 0.738 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.408 0.592 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -0.382 15.801 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.187 4.187 4 C 0.001 3.999 5 C -0.554 4.554 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.010 4.010 14 N -0.316 5.316 15 C 0.195 3.805 16 C -0.217 4.217 17 C -0.001 4.001 18 C -0.207 4.207 19 N 0.559 4.441 20 O -0.386 6.386 21 O -0.391 6.391 22 C 0.027 3.973 23 C -0.130 4.130 24 C -0.061 4.061 25 N -0.081 5.081 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.246 0.754 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.796 1.101 14.627 14.689 hybrid contribution -0.163 0.243 -0.605 0.673 sum -0.959 1.344 14.021 14.118 Atomic orbital electron populations 1.21794 0.94982 1.01415 1.00550 1.20934 0.95715 0.96008 0.94590 1.21794 1.00703 0.95694 1.00547 1.19092 0.96377 0.95198 0.89262 1.21132 1.31584 1.12270 0.90432 0.92260 1.24988 0.95149 0.94995 0.99143 1.69941 1.36735 1.22867 1.23700 0.86639 0.79262 0.79470 0.82928 1.20667 1.21200 1.19918 1.22124 0.99407 0.96572 0.82888 1.45634 1.51819 1.31172 1.02975 1.18150 0.87572 0.89943 0.84858 1.20683 1.04608 0.98329 0.98110 1.20917 0.92691 0.97104 0.89352 1.20437 1.14075 1.03514 0.82669 1.43408 0.98287 0.99582 1.02815 1.94527 1.34902 1.15680 1.93465 1.94530 1.57351 1.59936 1.27319 1.20609 0.88865 0.90581 0.97285 1.15066 1.09062 0.96772 0.92092 1.25161 0.93257 0.92658 0.95029 1.81331 1.10178 1.10855 1.05724 0.95493 0.90996 0.93024 0.93026 0.90998 0.95497 0.96189 0.96183 0.92875 0.90619 0.90613 0.75366 0.82374 0.82435 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 2 C -0.07 -1.14 0.54 -154.51 -0.08 -1.22 16 3 C -0.13 -2.02 8.05 37.16 0.30 -1.72 16 4 C 0.04 0.81 4.04 -27.88 -0.11 0.70 16 5 C -0.52 -12.63 7.65 -34.44 -0.26 -12.89 16 6 H 0.06 1.42 5.68 -52.49 -0.30 1.12 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -24.60 13.29 55.43 0.74 -23.87 16 9 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.11 1.35 3.80 -4.04 -0.02 1.34 16 14 N -0.70 -7.26 5.04 -58.42 -0.29 -7.56 16 15 C 0.31 2.86 6.66 -83.56 -0.56 2.30 16 16 C -0.19 -1.50 9.29 -39.42 -0.37 -1.87 16 17 C 0.02 0.16 9.54 -39.54 -0.38 -0.22 16 18 C -0.12 -1.13 6.84 -79.98 -0.55 -1.68 16 19 N 0.04 0.52 4.45 33.94 0.15 0.67 16 20 O -0.17 -2.15 18.43 -29.46 -0.54 -2.70 16 21 O -0.18 -2.28 18.43 -29.46 -0.54 -2.83 16 22 C 0.05 0.42 9.26 -39.18 -0.36 0.06 16 23 C -0.12 -1.09 5.76 -106.61 -0.61 -1.71 16 24 C 0.25 2.76 14.09 -22.47 -0.32 2.45 16 25 N -0.41 -5.28 18.54 41.84 0.78 -4.50 16 26 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16 36 H 0.08 0.87 7.94 -51.93 -0.41 0.46 16 37 H 0.41 4.52 5.02 -40.82 -0.20 4.31 16 38 H 0.16 1.05 6.72 -52.49 -0.35 0.69 16 39 H 0.16 0.99 7.59 -52.48 -0.40 0.59 16 40 H 0.16 1.17 7.59 -52.49 -0.40 0.77 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -28.02 344.37 -7.37 -35.39 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.70 Total: -0.19 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -3.11 Total: -14.74 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 1.37 Total: -35.25 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -1.09 Total: -5.52 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.02 -7.37 -35.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229688225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.917 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds