Wall clock time and date at job start Tue Mar 31 2020 07:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46919 * 2 1 4 4 C 1.52993 * 109.47687 * 239.99604 * 2 1 3 5 5 C 1.50707 * 109.46957 * 60.00051 * 4 2 1 6 6 H 1.07997 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00187 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46879 * 90.00031 * 9 7 5 11 11 H 1.48493 * 109.47222 * 210.00010 * 9 7 5 12 12 H 1.48496 * 109.46780 * 330.00160 * 9 7 5 13 13 C 1.53001 * 109.47041 * 119.99536 * 2 1 3 14 14 N 1.46502 * 109.47415 * 300.00369 * 13 2 1 15 15 C 1.39027 * 120.00102 * 179.97438 * 14 13 2 16 16 C 1.38879 * 120.17147 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.06725 * 179.97438 * 16 15 14 18 18 C 1.38570 * 120.42343 * 359.97438 * 17 16 15 19 19 N 1.48019 * 119.82625 * 180.02562 * 18 17 16 20 20 O 1.21792 * 120.00041 * 0.02562 * 19 18 17 21 21 O 1.21795 * 119.99844 * 179.97438 * 19 18 17 22 22 C 1.37798 * 120.34472 * 0.04633 * 18 17 16 23 23 C 1.39733 * 119.91912 * 359.93215 * 22 18 17 24 24 C 1.43201 * 120.20455 * 180.31598 * 23 22 18 25 25 N 5.39005 * 72.97857 * 64.13748 * 2 1 3 26 26 H 1.08997 * 109.47185 * 300.00085 * 1 2 3 27 27 H 1.08996 * 109.46713 * 60.00652 * 1 2 3 28 28 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46966 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46896 * 299.99236 * 3 2 1 31 31 H 1.08997 * 109.47261 * 59.99962 * 3 2 1 32 32 H 1.09001 * 109.47590 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47410 * 300.00322 * 4 2 1 34 34 H 0.97005 * 119.99592 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47091 * 180.02562 * 13 2 1 36 36 H 1.09002 * 109.46957 * 60.00057 * 13 2 1 37 37 H 0.97008 * 119.99688 * 359.97438 * 14 13 2 38 38 H 1.07991 * 119.96874 * 359.97438 * 16 15 14 39 39 H 1.08003 * 119.78755 * 180.02562 * 17 16 15 40 40 H 1.07993 * 120.03986 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8706 -0.4823 -3.7319 8 7 2.6267 -1.5516 -3.8524 9 14 1.2474 0.3978 -5.2572 10 1 2.2254 1.4394 -5.6620 11 1 1.0821 -0.5817 -6.3610 12 1 -0.0607 1.0353 -4.9611 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4455 15 6 1.8870 -0.5058 3.7082 16 6 2.6853 -1.6346 3.8398 17 6 3.0174 -2.1042 5.0945 18 6 2.5595 -1.4558 6.2303 19 7 2.9242 -1.9706 7.5694 20 8 3.6254 -2.9612 7.6707 21 8 2.5239 -1.4028 8.5698 22 6 1.7661 -0.3346 6.1198 23 6 1.4215 0.1535 4.8566 24 6 0.6029 1.3221 4.7346 25 7 -0.0478 2.2482 4.6377 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9562 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.1301 -0.7217 -1.2488 33 1 1.6768 -1.7490 -1.2491 34 1 2.8605 -1.8834 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2494 37 1 0.9941 0.7584 2.3564 38 1 3.0465 -2.1454 2.9596 39 1 3.6388 -2.9822 5.1916 40 1 1.4116 0.1666 7.0082 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229688225.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:51:44 Heat of formation + Delta-G solvation = 20.180028 kcal Electronic energy + Delta-G solvation = -23690.516510 eV Core-core repulsion = 20086.469137 eV Total energy + Delta-G solvation = -3604.047373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.07370 -41.21511 -39.14146 -37.68170 -37.48404 -36.15303 -34.34891 -32.79854 -31.51643 -29.06631 -28.05321 -27.97345 -26.48993 -25.37798 -24.78669 -22.79726 -21.24380 -20.04384 -19.47799 -18.78292 -18.42137 -18.37375 -18.16566 -17.26245 -16.52853 -16.09819 -15.60175 -15.46054 -15.29582 -14.88619 -14.58389 -14.39998 -14.33696 -14.29707 -13.96730 -13.77499 -13.62732 -12.97147 -12.78262 -12.75836 -12.73927 -12.51641 -12.37702 -12.24785 -12.15710 -12.14927 -12.01286 -11.82671 -11.38599 -11.05037 -10.88873 -10.50655 -10.45318 -9.01590 -8.15962 -6.21110 -1.02144 -0.45557 0.42613 0.51652 1.39282 1.42047 1.43925 1.49663 1.68084 1.96531 2.42785 2.50856 2.59019 3.19855 3.37483 3.61834 3.74863 3.81706 3.92521 4.03888 4.16228 4.33548 4.50388 4.57332 4.66740 4.68857 4.75893 4.78599 4.87475 5.05666 5.08265 5.14595 5.35403 5.44781 5.47273 5.48337 5.55122 5.76099 5.78427 5.90258 6.16330 6.29645 6.32499 6.64638 6.93629 7.46380 8.95519 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025674 B = 0.002860 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.346550 B = 9786.493398 C =10680.479430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.126 4.126 4 C 0.043 3.957 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.004 3.996 8 N -0.930 5.930 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.124 3.876 14 N -0.698 5.698 15 C 0.317 3.683 16 C -0.185 4.185 17 C 0.031 3.969 18 C -0.124 4.124 19 N 0.046 4.954 20 O -0.184 6.184 21 O -0.204 6.204 22 C 0.059 3.941 23 C -0.118 4.118 24 C 0.274 3.726 25 N -0.445 5.445 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.000 1.000 33 H 0.000 1.000 34 H 0.260 0.740 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.406 0.594 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -0.275 16.601 16.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.067 4.067 3 C -0.183 4.183 4 C 0.006 3.994 5 C -0.555 4.555 6 H 0.080 0.920 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.001 3.999 14 N -0.318 5.318 15 C 0.199 3.801 16 C -0.208 4.208 17 C 0.010 3.990 18 C -0.212 4.212 19 N 0.556 4.444 20 O -0.397 6.397 21 O -0.411 6.411 22 C 0.036 3.964 23 C -0.128 4.128 24 C -0.041 4.041 25 N -0.121 5.121 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.883 1.224 15.477 15.551 hybrid contribution -0.130 0.197 -0.836 0.869 sum -1.013 1.421 14.641 14.745 Atomic orbital electron populations 1.21721 0.94639 1.01347 1.00592 1.20709 0.95895 0.95960 0.94113 1.21722 1.00595 0.95383 1.00613 1.18941 0.94947 0.94429 0.91113 1.21585 1.30360 1.11950 0.91588 0.92016 1.25736 0.95756 0.95791 1.02058 1.70052 1.38552 1.24503 1.24041 0.85752 0.78961 0.78364 0.79803 1.20416 1.21435 1.19183 1.21839 0.99892 0.96431 0.81718 1.45413 1.52270 1.31201 1.02911 1.18211 0.87602 0.90208 0.84072 1.20841 1.03733 0.97603 0.98600 1.21125 0.92027 0.97199 0.88619 1.20546 1.14762 1.04045 0.81815 1.43690 0.97917 0.99334 1.03463 1.94515 1.35274 1.16098 1.93780 1.94527 1.58020 1.60235 1.28326 1.20663 0.88119 0.90146 0.97462 1.14958 1.09198 0.96359 0.92272 1.25311 0.92524 0.92357 0.93867 1.81357 1.11600 1.12152 1.06987 0.92952 0.93412 0.93139 0.93143 0.93363 0.92963 0.98206 0.98198 0.93126 0.89613 0.89607 0.75621 0.80704 0.80639 0.81503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.05 71.98 0.58 -3.14 16 2 C -0.07 -2.01 0.54 -52.18 -0.03 -2.04 16 3 C -0.13 -3.72 8.05 71.98 0.58 -3.14 16 4 C 0.04 1.85 4.04 29.85 0.12 1.97 16 5 C -0.52 -25.41 7.65 25.60 0.20 -25.22 16 6 H 0.06 2.95 5.68 -2.91 -0.02 2.94 16 7 C 0.00 0.22 5.46 84.65 0.46 0.69 16 8 N -0.93 -52.05 13.29 21.45 0.28 -51.76 16 9 Si 0.94 41.53 29.54 68.60 2.03 43.56 16 10 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 C 0.12 2.66 3.80 86.38 0.33 2.99 16 14 N -0.70 -12.42 5.04 -338.73 -1.71 -14.13 16 15 C 0.32 4.75 6.66 38.67 0.26 5.00 16 16 C -0.18 -2.19 9.29 22.37 0.21 -1.98 16 17 C 0.03 0.38 9.54 22.30 0.21 0.60 16 18 C -0.12 -2.03 6.84 36.35 0.25 -1.78 16 19 N 0.05 1.01 4.45 -46.52 -0.21 0.80 16 20 O -0.18 -4.34 18.43 18.90 0.35 -3.99 16 21 O -0.20 -4.98 18.43 18.89 0.35 -4.64 16 22 C 0.06 0.86 9.26 22.53 0.21 1.07 16 23 C -0.12 -1.83 5.76 -21.15 -0.12 -1.95 16 24 C 0.27 5.40 14.09 88.33 1.24 6.65 16 25 N -0.44 -10.95 18.54 19.00 0.35 -10.60 16 26 H 0.05 1.28 6.86 -2.39 -0.02 1.26 16 27 H 0.05 1.63 6.62 -2.39 -0.02 1.62 16 28 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.64 6.62 -2.39 -0.02 1.63 16 31 H 0.05 1.27 6.86 -2.39 -0.02 1.25 16 32 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 34 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 35 H 0.09 1.71 7.94 -2.39 -0.02 1.69 16 36 H 0.09 1.71 7.94 -2.39 -0.02 1.69 16 37 H 0.41 7.78 5.02 -92.70 -0.47 7.31 16 38 H 0.18 1.58 6.72 -2.92 -0.02 1.56 16 39 H 0.18 1.57 7.59 -2.91 -0.02 1.55 16 40 H 0.17 2.15 7.59 -2.91 -0.02 2.13 16 Total: -1.00 -60.90 344.37 6.57 -54.33 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.62 Total: 6.72 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: 4.50 Total: -20.29 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.28 Total: -75.69 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.70 Total: -8.62 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -60.90 6.57 -54.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229688225.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.513 kcal (2) G-P(sol) polarization free energy of solvation -60.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds