Wall clock time and date at job start Tue Mar 31 2020 07:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47038 * 2 1 4 4 C 1.50704 * 109.46836 * 119.99897 * 2 1 3 5 5 N 1.30002 * 126.21028 * 299.97242 * 4 2 1 6 6 O 1.21276 * 110.49624 * 180.02562 * 5 4 2 7 7 C 1.34051 * 109.74295 * 0.02562 * 6 5 4 8 8 N 1.37379 * 126.66294 * 179.97438 * 7 6 5 9 9 C 1.46500 * 119.99756 * 0.02562 * 8 7 6 10 10 C 1.50702 * 109.46789 * 180.02562 * 9 8 7 11 11 C 1.38295 * 119.93331 * 89.99748 * 10 9 8 12 12 C 1.38099 * 120.06865 * 180.29799 * 11 10 9 13 13 C 1.38882 * 119.93206 * 359.47410 * 12 11 10 14 14 O 1.35746 * 120.07145 * 180.25590 * 13 12 11 15 15 C 1.34834 * 117.00340 * 174.73672 * 14 13 12 16 16 H 1.08003 * 119.99155 * 5.05417 * 15 14 13 17 17 C 1.38652 * 120.00189 * 185.05311 * 15 14 13 18 18 N 1.31551 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99812 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47232 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47355 * 120.00140 * 19 17 15 22 22 H 1.48507 * 109.46726 * 240.00180 * 19 17 15 23 23 C 1.38876 * 119.85943 * 0.52538 * 13 12 11 24 24 C 1.38100 * 119.93177 * 359.72571 * 23 13 12 25 25 N 1.32141 * 106.67124 * 0.23711 * 7 6 5 26 26 H 1.09005 * 109.47484 * 300.00328 * 1 2 3 27 27 H 1.09004 * 109.47041 * 60.00296 * 1 2 3 28 28 H 1.08994 * 109.47567 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47053 * 239.99918 * 2 1 3 30 30 H 1.08992 * 109.47369 * 59.99847 * 3 2 1 31 31 H 1.09009 * 109.47073 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47026 * 299.99322 * 3 2 1 33 33 H 0.96994 * 119.99879 * 180.02562 * 8 7 6 34 34 H 1.08992 * 109.47285 * 60.00246 * 9 8 7 35 35 H 1.08999 * 109.47075 * 299.99620 * 9 8 7 36 36 H 1.08000 * 119.96836 * 0.02607 * 11 10 9 37 37 H 1.08002 * 120.03655 * 179.72759 * 12 11 10 38 38 H 0.97006 * 120.00187 * 180.02562 * 18 17 15 39 39 H 1.07996 * 120.03796 * 179.70626 * 23 13 12 40 40 H 1.07997 * 119.96864 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7942 -0.3728 2.4632 6 8 2.3384 -1.1419 3.2268 7 6 3.0004 -2.0777 2.5317 8 7 3.7360 -3.1164 3.0486 9 6 3.8523 -3.2806 4.4997 10 6 4.7060 -4.4851 4.8021 11 6 6.0747 -4.3436 4.9406 12 6 6.8604 -5.4465 5.2115 13 6 6.2735 -6.6969 5.3559 14 8 7.0426 -7.7820 5.6274 15 6 6.4005 -8.9440 5.8629 16 1 5.3278 -9.0005 5.7506 17 6 7.1172 -10.0663 6.2492 18 7 8.4237 -9.9973 6.3864 19 14 6.2276 -11.6763 6.5748 20 1 4.7711 -11.4909 6.3521 21 1 6.7409 -12.7208 5.6524 22 1 6.4635 -12.0969 7.9794 23 6 4.8988 -6.8357 5.2162 24 6 4.1191 -5.7298 4.9401 25 7 2.8127 -1.8035 1.2527 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 4.1783 -3.7410 2.4528 34 1 2.8608 -3.4203 4.9302 35 1 4.3134 -2.3916 4.9302 36 1 6.5302 -3.3703 4.8323 37 1 7.9298 -5.3361 5.3152 38 1 8.9253 -10.7825 6.6563 39 1 4.4399 -7.8075 5.3231 40 1 3.0500 -5.8372 4.8310 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265669977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:40 Heat of formation + Delta-G solvation = 61.548197 kcal Electronic energy + Delta-G solvation = -22983.864646 eV Core-core repulsion = 19381.611131 eV Total energy + Delta-G solvation = -3602.253514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.22683 -39.32209 -37.52296 -36.86399 -35.97994 -34.05082 -32.48767 -31.19029 -30.36799 -29.36779 -27.49833 -26.03627 -25.03602 -24.32736 -23.26114 -22.15940 -20.84965 -20.18081 -18.20387 -18.06914 -17.97067 -17.33609 -16.86563 -15.34693 -15.12134 -15.01415 -14.64079 -14.40752 -14.29111 -13.88389 -13.74286 -13.66583 -13.39102 -12.88325 -12.54567 -12.48002 -12.31146 -11.94154 -11.87877 -11.78005 -11.47317 -11.45588 -11.27504 -11.02978 -10.93156 -10.80546 -10.76062 -10.54686 -10.52205 -9.50201 -8.99429 -8.40580 -8.35127 -7.44830 -6.60111 -4.18847 1.48229 1.77235 2.04572 2.44542 2.45299 3.03985 3.05804 3.11453 3.41632 3.84649 3.93447 4.35997 4.50300 4.77701 4.81349 4.88438 4.94753 5.05425 5.11257 5.18969 5.30300 5.43721 5.49594 5.52457 5.58059 5.59747 5.67043 5.82955 5.88889 5.92257 6.03551 6.12894 6.23822 6.48844 6.67903 6.72627 6.86329 7.02969 7.14713 7.20660 7.27005 7.61416 7.84402 8.45439 8.85099 9.51761 10.57087 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.002187 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.227530 B =12797.547166 C =13101.938355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.144 4.144 4 C 0.205 3.795 5 N -0.404 5.404 6 O 0.030 5.970 7 C 0.434 3.566 8 N -0.657 5.657 9 C 0.181 3.819 10 C -0.222 4.222 11 C -0.049 4.049 12 C -0.196 4.196 13 C 0.164 3.836 14 O -0.170 6.170 15 C -0.394 4.394 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.856 5.856 19 Si 0.943 3.057 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.238 4.238 24 C -0.045 4.045 25 N -0.549 5.549 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.431 0.569 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.120 0.880 38 H 0.272 0.728 39 H 0.129 0.871 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 15.538 -8.256 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 C -0.202 4.202 4 C -0.069 4.069 5 N -0.128 5.128 6 O -0.014 6.014 7 C 0.125 3.875 8 N -0.309 5.309 9 C 0.059 3.941 10 C -0.224 4.224 11 C -0.068 4.068 12 C -0.215 4.215 13 C 0.108 3.892 14 O -0.072 6.072 15 C -0.470 4.470 16 H 0.113 0.887 17 C -0.165 4.165 18 N -0.490 5.490 19 Si 0.768 3.232 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.257 4.257 24 C -0.064 4.064 25 N -0.296 5.296 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.147 0.853 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.626 15.955 -8.085 21.332 hybrid contribution -0.083 -1.381 0.160 1.393 sum -11.709 14.574 -7.924 20.305 Atomic orbital electron populations 1.21832 0.93097 1.02507 1.02743 1.19503 0.96208 0.95247 0.91366 1.21831 1.01464 0.94135 1.02742 1.25318 0.95214 0.92061 0.94311 1.74466 1.21069 1.14771 1.02449 1.85341 1.50859 1.30711 1.34491 1.24428 0.90016 0.88120 0.84958 1.44054 1.52109 1.25919 1.08800 1.20256 0.99603 0.97122 0.77128 1.18984 0.93798 0.93653 1.15963 1.20530 0.92464 0.97275 0.96513 1.20218 0.99979 0.90351 1.10976 1.19463 0.90022 0.88218 0.91477 1.83976 1.33887 1.15013 1.74316 1.21431 0.93133 0.84768 1.47644 0.88741 1.25347 0.95780 0.99247 0.96111 1.70041 1.05806 1.30625 1.42539 0.85612 0.79133 0.79989 0.78506 1.18985 1.20002 1.20000 1.21161 0.93805 0.99597 1.11182 1.20647 0.98435 0.91633 0.95656 1.72312 1.25052 1.18127 1.14155 0.91879 0.91306 0.92337 0.88284 0.91881 0.92335 0.91306 0.72703 0.91053 0.91012 0.86801 0.86236 0.91808 0.85290 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 4 C 0.21 2.66 6.71 -156.48 -1.05 1.61 16 5 N -0.40 -5.63 12.14 31.15 0.38 -5.25 16 6 O 0.03 0.42 11.07 17.05 0.19 0.61 16 7 C 0.43 5.81 9.10 -87.54 -0.80 5.01 16 8 N -0.66 -7.80 5.66 -63.69 -0.36 -8.16 16 9 C 0.18 2.09 6.19 -5.19 -0.03 2.06 16 10 C -0.22 -3.20 5.25 -104.57 -0.55 -3.75 16 11 C -0.05 -0.76 9.69 -39.61 -0.38 -1.14 16 12 C -0.20 -3.75 9.99 -39.39 -0.39 -4.14 16 13 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 14 O -0.17 -4.58 9.76 0.05 0.00 -4.58 16 15 C -0.39 -10.44 9.49 30.89 0.29 -10.15 16 16 H 0.10 2.30 5.20 -52.48 -0.27 2.03 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.12 13.67 55.48 0.76 -23.36 16 19 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.24 -4.69 9.17 -39.40 -0.36 -5.05 16 24 C -0.04 -0.72 9.69 -39.61 -0.38 -1.10 16 25 N -0.55 -7.77 11.59 -13.04 -0.15 -7.92 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.43 5.01 8.58 -40.82 -0.35 4.66 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 39 H 0.13 2.58 5.64 -52.49 -0.30 2.28 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 349.00 15.07 5.26 5.26 Total: -1.00 -29.63 349.00 -7.71 -37.34 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.12 Total: 5.70 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -3.64 Total: -14.23 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.63 Total: -44.69 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.19 Total: -3.97 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.63 -7.71 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265669977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.888 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds