Wall clock time and date at job start Tue Mar 31 2020 08:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.28071 * 2 1 4 4 C 1.50690 * 109.37708 * 119.70873 * 2 1 3 5 5 O 1.21294 * 120.31551 * 265.14297 * 4 2 1 6 6 N 1.35152 * 119.36950 * 85.41706 * 4 2 1 7 7 C 1.40356 * 118.51090 * 0.25812 * 6 4 2 8 8 C 1.38010 * 120.38606 * 198.51727 * 7 6 4 9 9 C 1.39885 * 119.76585 * 180.02562 * 8 7 6 10 10 C 1.47417 * 120.08783 * 180.02562 * 9 8 7 11 11 O 1.21630 * 119.99987 * 314.42754 * 10 9 8 12 12 N 1.34777 * 119.99614 * 134.42216 * 10 9 8 13 13 C 1.46495 * 120.00010 * 3.83550 * 12 10 9 14 14 C 1.36914 * 119.99766 * 183.82682 * 12 10 9 15 15 H 1.07992 * 119.99707 * 24.64650 * 14 12 10 16 16 C 1.39007 * 119.99753 * 204.64615 * 14 12 10 17 17 N 1.31390 * 120.00554 * 23.17593 * 16 14 12 18 18 Si 1.86806 * 119.99834 * 203.17746 * 16 14 12 19 19 H 1.48500 * 109.47089 * 94.98756 * 18 16 14 20 20 H 1.48497 * 109.47283 * 214.98996 * 18 16 14 21 21 H 1.48510 * 109.46856 * 334.98827 * 18 16 14 22 22 C 1.39839 * 119.82223 * 359.97438 * 9 8 7 23 23 C 1.37668 * 120.14722 * 0.05748 * 22 9 8 24 24 C 1.39128 * 120.17887 * 0.02562 * 23 22 9 25 25 N 1.39082 * 119.98354 * 179.86645 * 24 23 22 26 26 C 1.46907 * 110.99705 * 19.49137 * 25 24 23 27 27 H 1.08995 * 109.46756 * 300.29132 * 1 2 3 28 28 H 1.08993 * 109.47452 * 60.29188 * 1 2 3 29 29 H 1.08998 * 109.47307 * 180.29812 * 1 2 3 30 30 H 0.96999 * 120.74209 * 180.48046 * 6 4 2 31 31 H 1.08000 * 120.11327 * 0.02756 * 8 7 6 32 32 H 1.09000 * 109.47534 * 85.19270 * 13 12 10 33 33 H 1.09006 * 109.46942 * 205.19023 * 13 12 10 34 34 H 1.08999 * 109.47181 * 325.18838 * 13 12 10 35 35 H 0.96995 * 119.99873 * 180.02562 * 17 16 14 36 36 H 1.07997 * 119.92573 * 180.08238 * 22 9 8 37 37 H 1.07995 * 119.91538 * 179.97438 * 23 22 9 38 38 H 1.08995 * 109.46546 * 178.02861 * 26 25 24 39 39 H 1.08993 * 109.47194 * 298.03136 * 26 25 24 40 40 H 1.09001 * 109.46695 * 58.02805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0289 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3167 -0.0700 2.2279 6 7 2.1611 -2.0496 1.2231 7 6 1.8291 -2.7450 0.0499 8 6 1.5776 -4.1014 0.0899 9 6 1.2484 -4.7816 -1.0872 10 6 0.9778 -6.2303 -1.0526 11 8 1.7172 -6.9725 -0.4346 12 7 -0.0890 -6.7324 -1.7056 13 6 -0.9313 -5.8515 -2.5185 14 6 -0.3853 -8.0656 -1.6095 15 1 -0.0557 -8.6314 -0.7507 16 6 -1.1103 -8.6908 -2.6173 17 7 -1.1253 -8.1820 -3.8285 18 14 -2.0636 -10.2547 -2.2495 19 1 -3.4737 -9.9123 -1.9341 20 1 -2.0244 -11.1487 -3.4346 21 1 -1.4503 -10.9464 -1.0871 22 6 1.1756 -4.0835 -2.2967 23 6 1.4282 -2.7306 -2.3304 24 6 1.7576 -2.0513 -1.1618 25 7 2.0147 -0.6850 -1.2010 26 6 1.4533 -0.0784 -2.4155 27 1 -0.3633 0.5183 0.8873 28 1 -0.3634 0.5092 -0.8925 29 1 -0.3634 -1.0276 0.0053 30 1 2.4745 -2.5240 2.0089 31 1 1.6347 -4.6357 1.0268 32 1 -0.5013 -5.7559 -3.5155 33 1 -1.9330 -6.2748 -2.5939 34 1 -0.9865 -4.8685 -2.0508 35 1 -1.6315 -8.6181 -4.5316 36 1 0.9203 -4.6068 -3.2063 37 1 1.3713 -2.1953 -3.2666 38 1 1.6382 0.9957 -2.4038 39 1 1.9257 -0.5189 -3.2934 40 1 0.3794 -0.2620 -2.4502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267405595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:36 Heat of formation + Delta-G solvation = -10.826767 kcal Electronic energy + Delta-G solvation = -25005.588716 eV Core-core repulsion = 21400.196788 eV Total energy + Delta-G solvation = -3605.391928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.60288 -39.20653 -38.28724 -36.73568 -35.08123 -34.73692 -31.98032 -31.45113 -29.82573 -29.06843 -27.27814 -26.27860 -25.00193 -23.71853 -23.01906 -22.12033 -20.29728 -18.81289 -18.00163 -17.74344 -16.95574 -16.22425 -15.98040 -15.63322 -15.19453 -15.01292 -14.75169 -14.40456 -14.17652 -14.11843 -13.67197 -13.39960 -13.23864 -13.12917 -12.69084 -12.43537 -12.18243 -12.09777 -11.84820 -11.74659 -11.54033 -11.37530 -11.02102 -10.90403 -10.59051 -10.39520 -10.38094 -10.25602 -9.85519 -9.09360 -8.55347 -8.39368 -7.75534 -7.50960 -6.48280 -3.94849 1.13319 1.38747 2.32239 2.88261 3.10309 3.21219 3.26542 3.37152 3.64245 3.98560 4.08630 4.15411 4.51335 4.66304 4.71140 4.76208 4.96992 5.01338 5.12539 5.22219 5.23098 5.33543 5.47556 5.50301 5.56612 5.60133 5.71580 5.88573 5.93258 6.20738 6.27256 6.52210 6.60672 6.63000 6.68351 6.75554 6.89887 6.97714 7.21660 7.48095 7.82715 8.05268 8.38374 9.08444 9.29840 9.89155 10.57763 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003718 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.692941 B = 7528.918922 C = 8020.649878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.068 3.932 3 H 0.126 0.874 4 C 0.531 3.469 5 O -0.527 6.527 6 N -0.656 5.656 7 C 0.107 3.893 8 C -0.083 4.083 9 C -0.083 4.083 10 C 0.476 3.524 11 O -0.584 6.584 12 N -0.428 5.428 13 C 0.103 3.897 14 C -0.313 4.313 15 H 0.101 0.899 16 C 0.037 3.963 17 N -0.864 5.864 18 Si 0.921 3.079 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.085 4.085 23 C -0.140 4.140 24 C 0.081 3.919 25 N -0.482 5.482 26 C 0.019 3.981 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.415 0.585 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.270 0.730 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 16.510 0.221 16.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.042 4.042 3 H 0.143 0.857 4 C 0.318 3.682 5 O -0.402 6.402 6 N -0.302 5.302 7 C 0.010 3.990 8 C -0.105 4.105 9 C -0.089 4.089 10 C 0.265 3.735 11 O -0.470 6.470 12 N -0.145 5.145 13 C -0.040 4.040 14 C -0.441 4.441 15 H 0.119 0.881 16 C -0.168 4.168 17 N -0.501 5.501 18 Si 0.747 3.253 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.105 4.105 23 C -0.161 4.161 24 C -0.019 4.019 25 N -0.197 5.197 26 C -0.127 4.127 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.254 0.746 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.504 16.718 0.751 16.743 hybrid contribution -1.048 -1.093 0.206 1.528 sum -0.544 15.625 0.957 15.664 Atomic orbital electron populations 1.22420 0.93765 1.03965 1.04052 1.21974 0.95767 0.99484 0.86996 0.85656 1.20567 0.76465 0.81891 0.89281 1.90769 1.48911 1.65409 1.35080 1.43710 1.64754 1.07096 1.14620 1.17284 1.05201 0.91965 0.84515 1.20633 0.99774 0.90917 0.99205 1.20087 1.00682 0.95144 0.92943 1.17851 0.82701 0.86276 0.86650 1.90640 1.48302 1.59753 1.48269 1.43482 1.21650 1.08241 1.41142 1.21666 0.96372 0.91407 0.94596 1.19638 1.33828 0.84736 1.05889 0.88142 1.25333 0.98369 0.99291 0.93816 1.70039 1.38400 1.41521 1.00155 0.86001 0.79803 0.81074 0.78443 1.20284 1.20897 1.19128 1.21461 0.97453 0.93287 0.98254 1.20850 1.03716 0.94892 0.96638 1.18547 1.01750 0.88860 0.92725 1.58616 1.56489 1.01146 1.03456 1.22615 0.98774 1.00127 0.91196 0.90687 0.90248 0.91307 0.74637 0.84766 0.92565 0.91518 0.94430 0.92016 0.84299 0.84690 0.90399 0.89690 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.47 37.16 0.31 -1.32 16 2 C 0.07 0.71 2.92 -69.08 -0.20 0.51 16 3 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.53 7.11 7.16 -10.82 -0.08 7.03 16 5 O -0.53 -8.39 17.96 5.55 0.10 -8.29 16 6 N -0.66 -8.63 5.49 -9.65 -0.05 -8.68 16 7 C 0.11 1.53 6.17 -83.45 -0.51 1.02 16 8 C -0.08 -1.38 9.58 -39.05 -0.37 -1.76 16 9 C -0.08 -1.58 5.00 -104.94 -0.52 -2.10 16 10 C 0.48 11.54 7.21 -12.52 -0.09 11.45 16 11 O -0.58 -16.32 16.73 5.25 0.09 -16.24 16 12 N -0.43 -10.61 3.00 -123.43 -0.37 -10.98 16 13 C 0.10 2.15 7.35 59.84 0.44 2.59 16 14 C -0.31 -8.48 9.13 -15.00 -0.14 -8.62 16 15 H 0.10 2.87 7.56 -52.49 -0.40 2.47 16 16 C 0.04 0.96 4.77 -17.46 -0.08 0.87 16 17 N -0.86 -22.16 11.55 55.50 0.64 -21.51 16 18 Si 0.92 19.88 29.61 -169.99 -5.03 14.84 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C -0.08 -1.34 7.69 -39.19 -0.30 -1.64 16 23 C -0.14 -1.79 8.95 -39.46 -0.35 -2.15 16 24 C 0.08 1.06 5.07 -83.65 -0.42 0.64 16 25 N -0.48 -5.26 4.85 -172.81 -0.84 -6.10 16 26 C 0.02 0.14 7.69 60.07 0.46 0.60 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.55 6.44 -51.93 -0.33 0.21 16 29 H 0.07 0.73 7.29 -51.93 -0.38 0.35 16 30 H 0.41 4.90 8.90 -40.82 -0.36 4.54 16 31 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 32 H 0.06 1.17 6.67 -51.93 -0.35 0.82 16 33 H 0.07 1.46 7.07 -51.93 -0.37 1.09 16 34 H 0.04 0.66 6.17 -51.93 -0.32 0.34 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.14 2.24 5.95 -52.49 -0.31 1.93 16 37 H 0.14 1.34 5.90 -52.49 -0.31 1.03 16 38 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 39 H 0.08 0.59 6.64 -51.93 -0.34 0.25 16 40 H 0.05 0.35 6.55 -51.93 -0.34 0.01 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -32.47 323.58 -7.09 -39.57 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.64 Total: 5.39 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.87 Total: 7.12 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.62 Total: -47.27 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: 0.19 Total: -24.53 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.47 -7.09 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267405595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.740 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds