Wall clock time and date at job start Tue Mar 31 2020 08:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.28071 * 2 1 4 4 C 1.50690 * 109.37708 * 119.70873 * 2 1 3 5 5 O 1.21294 * 120.31551 * 265.14297 * 4 2 1 6 6 N 1.35152 * 119.36950 * 85.41706 * 4 2 1 7 7 C 1.40356 * 118.51090 * 0.25812 * 6 4 2 8 8 C 1.38010 * 120.38606 * 198.51727 * 7 6 4 9 9 C 1.39885 * 119.76585 * 180.02562 * 8 7 6 10 10 C 1.47417 * 120.08783 * 180.02562 * 9 8 7 11 11 O 1.21630 * 119.99987 * 314.42754 * 10 9 8 12 12 N 1.34777 * 119.99614 * 134.42216 * 10 9 8 13 13 C 1.46495 * 120.00010 * 3.83550 * 12 10 9 14 14 C 1.36914 * 119.99766 * 183.82682 * 12 10 9 15 15 H 1.07992 * 119.99707 * 24.64650 * 14 12 10 16 16 C 1.39007 * 119.99753 * 204.64615 * 14 12 10 17 17 N 1.31390 * 120.00554 * 23.17593 * 16 14 12 18 18 Si 1.86806 * 119.99834 * 203.17746 * 16 14 12 19 19 H 1.48500 * 109.47089 * 94.98756 * 18 16 14 20 20 H 1.48497 * 109.47283 * 214.98996 * 18 16 14 21 21 H 1.48510 * 109.46856 * 334.98827 * 18 16 14 22 22 C 1.39839 * 119.82223 * 359.97438 * 9 8 7 23 23 C 1.37668 * 120.14722 * 0.05748 * 22 9 8 24 24 C 1.39128 * 120.17887 * 0.02562 * 23 22 9 25 25 N 1.39082 * 119.98354 * 179.86645 * 24 23 22 26 26 C 1.46907 * 110.99705 * 19.49137 * 25 24 23 27 27 H 1.08995 * 109.46756 * 300.29132 * 1 2 3 28 28 H 1.08993 * 109.47452 * 60.29188 * 1 2 3 29 29 H 1.08998 * 109.47307 * 180.29812 * 1 2 3 30 30 H 0.96999 * 120.74209 * 180.48046 * 6 4 2 31 31 H 1.08000 * 120.11327 * 0.02756 * 8 7 6 32 32 H 1.09000 * 109.47534 * 85.19270 * 13 12 10 33 33 H 1.09006 * 109.46942 * 205.19023 * 13 12 10 34 34 H 1.08999 * 109.47181 * 325.18838 * 13 12 10 35 35 H 0.96995 * 119.99873 * 180.02562 * 17 16 14 36 36 H 1.07997 * 119.92573 * 180.08238 * 22 9 8 37 37 H 1.07995 * 119.91538 * 179.97438 * 23 22 9 38 38 H 1.08995 * 109.46546 * 178.02861 * 26 25 24 39 39 H 1.08993 * 109.47194 * 298.03136 * 26 25 24 40 40 H 1.09001 * 109.46695 * 58.02805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8899 1.0289 0.0000 4 6 2.0299 -0.7045 1.2347 5 8 2.3167 -0.0700 2.2279 6 7 2.1611 -2.0496 1.2231 7 6 1.8291 -2.7450 0.0499 8 6 1.5776 -4.1014 0.0899 9 6 1.2484 -4.7816 -1.0872 10 6 0.9778 -6.2303 -1.0526 11 8 1.7172 -6.9725 -0.4346 12 7 -0.0890 -6.7324 -1.7056 13 6 -0.9313 -5.8515 -2.5185 14 6 -0.3853 -8.0656 -1.6095 15 1 -0.0557 -8.6314 -0.7507 16 6 -1.1103 -8.6908 -2.6173 17 7 -1.1253 -8.1820 -3.8285 18 14 -2.0636 -10.2547 -2.2495 19 1 -3.4737 -9.9123 -1.9341 20 1 -2.0244 -11.1487 -3.4346 21 1 -1.4503 -10.9464 -1.0871 22 6 1.1756 -4.0835 -2.2967 23 6 1.4282 -2.7306 -2.3304 24 6 1.7576 -2.0513 -1.1618 25 7 2.0147 -0.6850 -1.2010 26 6 1.4533 -0.0784 -2.4155 27 1 -0.3633 0.5183 0.8873 28 1 -0.3634 0.5092 -0.8925 29 1 -0.3634 -1.0276 0.0053 30 1 2.4745 -2.5240 2.0089 31 1 1.6347 -4.6357 1.0268 32 1 -0.5013 -5.7559 -3.5155 33 1 -1.9330 -6.2748 -2.5939 34 1 -0.9865 -4.8685 -2.0508 35 1 -1.6315 -8.6181 -4.5316 36 1 0.9203 -4.6068 -3.2063 37 1 1.3713 -2.1953 -3.2666 38 1 1.6382 0.9957 -2.4038 39 1 1.9257 -0.5189 -3.2934 40 1 0.3794 -0.2620 -2.4502 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267405595.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:35 Heat of formation + Delta-G solvation = -34.773450 kcal Electronic energy + Delta-G solvation = -25006.627122 eV Core-core repulsion = 21400.196788 eV Total energy + Delta-G solvation = -3606.430334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.63928 -40.73227 -39.58927 -37.87814 -36.68391 -36.24574 -33.76075 -32.57752 -30.98339 -30.16056 -28.33784 -27.84729 -26.64649 -24.84145 -24.16832 -23.23292 -21.74603 -19.95994 -19.35975 -18.91453 -18.76940 -17.59183 -17.06469 -16.86313 -16.65049 -16.31699 -16.04474 -15.79765 -15.55518 -15.19216 -15.05976 -14.73450 -14.50557 -14.07974 -13.78851 -13.68497 -13.61333 -13.27939 -13.10791 -12.95173 -12.84473 -12.63481 -12.59660 -12.44758 -12.15987 -12.04830 -11.67797 -11.32823 -11.03120 -10.90812 -10.42673 -9.70962 -9.54232 -8.59668 -8.42896 -5.99502 -0.07536 0.19626 1.24123 1.38720 1.42880 1.54900 1.82479 2.03790 2.27645 2.50805 2.74146 2.95548 3.06557 3.15172 3.56898 3.80675 3.89540 3.97322 4.19351 4.23444 4.25270 4.49291 4.56702 4.59307 4.60726 4.70505 4.74656 4.80648 4.93604 5.02852 5.03745 5.16265 5.24357 5.44384 5.46204 5.48918 5.52480 5.71075 5.86899 6.08525 6.14641 6.45431 6.77291 7.12768 7.39586 7.99369 8.62211 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.003718 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.692941 B = 7528.918922 C = 8020.649878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.071 3.929 3 H 0.149 0.851 4 C 0.526 3.474 5 O -0.556 6.556 6 N -0.656 5.656 7 C 0.106 3.894 8 C -0.087 4.087 9 C -0.116 4.116 10 C 0.469 3.531 11 O -0.638 6.638 12 N -0.443 5.443 13 C 0.115 3.885 14 C -0.356 4.356 15 H 0.069 0.931 16 C 0.010 3.990 17 N -0.879 5.879 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.277 1.277 22 C -0.080 4.080 23 C -0.125 4.125 24 C 0.101 3.899 25 N -0.487 5.487 26 C 0.010 3.990 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.050 0.950 30 H 0.416 0.584 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.278 0.722 36 H 0.136 0.864 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 19.511 -1.594 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.038 4.038 3 H 0.166 0.834 4 C 0.314 3.686 5 O -0.433 6.433 6 N -0.301 5.301 7 C 0.009 3.991 8 C -0.109 4.109 9 C -0.121 4.121 10 C 0.260 3.740 11 O -0.528 6.528 12 N -0.159 5.159 13 C -0.027 4.027 14 C -0.484 4.484 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.515 5.515 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.198 1.198 21 H -0.202 1.202 22 C -0.100 4.100 23 C -0.146 4.146 24 C -0.001 4.001 25 N -0.201 5.201 26 C -0.135 4.135 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.069 0.931 30 H 0.256 0.744 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.194 0.806 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.459 19.767 -1.102 19.804 hybrid contribution -0.654 -1.857 0.779 2.117 sum -1.113 17.911 -0.323 17.948 Atomic orbital electron populations 1.22422 0.92198 1.03299 1.05752 1.22087 0.96828 0.99795 0.85122 0.83384 1.21213 0.75714 0.81592 0.90063 1.90757 1.50283 1.65783 1.36514 1.43777 1.64454 1.07421 1.14498 1.17213 1.05204 0.91115 0.85591 1.20476 1.00251 0.92011 0.98206 1.19640 1.04986 0.92285 0.95204 1.18704 0.81696 0.88523 0.85103 1.90572 1.50023 1.61958 1.50217 1.43714 1.22330 1.08099 1.41742 1.21647 0.94743 0.92008 0.94328 1.19549 1.36420 0.86370 1.06049 0.91307 1.26040 0.98081 1.02061 0.93284 1.70067 1.38290 1.42650 1.00500 0.85072 0.78792 0.77380 0.78019 1.18667 1.19814 1.20156 1.21419 0.97424 0.94493 0.96671 1.21139 1.01899 0.93403 0.98138 1.18778 0.98991 0.90313 0.91981 1.58599 1.56623 0.99811 1.05087 1.22876 0.99537 1.01608 0.89459 0.90328 0.87329 0.93069 0.74448 0.85956 0.92556 0.92923 0.91253 0.91245 0.84629 0.80636 0.87845 0.88649 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.47 71.98 0.61 -1.88 16 2 C 0.07 1.23 2.92 44.24 0.13 1.36 16 3 H 0.15 1.98 8.14 -2.38 -0.02 1.96 16 4 C 0.53 13.16 7.16 87.59 0.63 13.79 16 5 O -0.56 -17.11 17.96 -3.07 -0.06 -17.16 16 6 N -0.66 -16.82 5.49 -302.62 -1.66 -18.48 16 7 C 0.11 2.93 6.17 38.10 0.24 3.16 16 8 C -0.09 -2.97 9.58 22.61 0.22 -2.76 16 9 C -0.12 -4.49 5.00 -20.07 -0.10 -4.59 16 10 C 0.47 23.99 7.21 86.66 0.62 24.62 16 11 O -0.64 -38.33 16.73 -4.13 -0.07 -38.40 16 12 N -0.44 -22.90 3.00 -662.67 -1.98 -24.89 16 13 C 0.12 4.85 7.35 127.77 0.94 5.79 16 14 C -0.36 -20.28 9.13 84.08 0.77 -19.51 16 15 H 0.07 4.24 7.56 -2.91 -0.02 4.22 16 16 C 0.01 0.51 4.77 84.94 0.41 0.92 16 17 N -0.88 -45.20 11.55 21.67 0.25 -44.95 16 18 Si 0.98 41.27 29.61 68.60 2.03 43.31 16 19 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 22 C -0.08 -2.44 7.69 22.52 0.17 -2.27 16 23 C -0.12 -2.76 8.95 22.35 0.20 -2.56 16 24 C 0.10 2.33 5.07 38.59 0.20 2.52 16 25 N -0.49 -8.51 4.85 -700.64 -3.40 -11.91 16 26 C 0.01 0.09 7.69 127.69 0.98 1.07 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.11 0.91 6.44 -2.39 -0.02 0.89 16 29 H 0.05 0.92 7.29 -2.39 -0.02 0.91 16 30 H 0.42 10.01 8.90 -92.71 -0.83 9.19 16 31 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 32 H 0.06 2.33 6.67 -2.39 -0.02 2.32 16 33 H 0.05 2.32 7.07 -2.38 -0.02 2.30 16 34 H 0.07 2.41 6.17 -2.39 -0.01 2.40 16 35 H 0.28 13.20 8.31 -92.71 -0.77 12.43 16 36 H 0.14 4.22 5.95 -2.91 -0.02 4.20 16 37 H 0.18 2.49 5.90 -2.91 -0.02 2.47 16 38 H 0.10 0.52 8.11 -2.39 -0.02 0.50 16 39 H 0.10 0.75 6.64 -2.39 -0.02 0.73 16 40 H 0.06 0.49 6.55 -2.39 -0.02 0.47 16 Total: -1.00 -74.98 323.58 1.39 -73.58 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.28 Total: 19.25 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.01 Total: 19.67 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -6.80 Total: -100.24 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.12 Total: -55.56 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.31 kcal Total: -74.98 1.39 -73.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267405595.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.810 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds