Wall clock time and date at job start Tue Mar 31 2020 08:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46949 * 2 1 4 4 C 1.50701 * 109.46968 * 119.99999 * 2 1 3 5 5 H 1.07992 * 120.00032 * 119.99930 * 4 2 1 6 6 C 1.37879 * 119.99860 * 300.00280 * 4 2 1 7 7 N 1.31514 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47235 * 89.99499 * 8 6 4 10 10 H 1.48503 * 109.46894 * 209.99733 * 8 6 4 11 11 H 1.48503 * 109.46830 * 329.99568 * 8 6 4 12 12 N 1.46892 * 109.47134 * 240.00135 * 2 1 3 13 13 C 1.46901 * 111.00080 * 183.95660 * 12 2 1 14 14 C 1.46897 * 111.00342 * 59.99743 * 12 2 1 15 15 C 1.50704 * 109.47508 * 190.00091 * 14 12 2 16 16 C 1.34715 * 125.66367 * 90.00084 * 15 14 12 17 17 C 1.40948 * 107.03283 * 180.02562 * 16 15 14 18 18 C 1.35955 * 106.73804 * 0.02562 * 17 16 15 19 19 C 1.47782 * 125.93066 * 180.02562 * 18 17 16 20 20 C 1.39582 * 120.15592 * 310.01519 * 19 18 17 21 21 C 1.37947 * 119.87714 * 179.97438 * 20 19 18 22 22 C 1.38383 * 120.19161 * 0.02720 * 21 20 19 23 23 C 1.38300 * 120.32340 * 359.67682 * 22 21 20 24 24 C 1.38209 * 120.11874 * 0.59935 * 23 22 21 25 25 F 1.35104 * 120.09848 * 179.69716 * 24 23 22 26 26 O 1.34329 * 125.65942 * 270.31210 * 15 14 12 27 27 H 1.08997 * 109.47063 * 59.99910 * 1 2 3 28 28 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46803 * 300.00205 * 1 2 3 30 30 H 0.97001 * 120.00289 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47163 * 296.04246 * 13 12 2 32 32 H 1.08998 * 109.47382 * 56.04056 * 13 12 2 33 33 H 1.09003 * 109.47222 * 176.04446 * 13 12 2 34 34 H 1.08998 * 109.47064 * 70.00181 * 14 12 2 35 35 H 1.08999 * 109.47126 * 310.00422 * 14 12 2 36 36 H 1.07999 * 126.48776 * 0.02562 * 16 15 14 37 37 H 1.07998 * 126.63349 * 179.97438 * 17 16 15 38 38 H 1.08008 * 120.06207 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.90167 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.83857 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.93942 * 180.32290 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8911 -3.6159 16 6 1.0479 -1.8351 -4.1331 17 6 1.7218 -2.3989 -5.2351 18 6 2.9189 -1.7614 -5.3300 19 6 3.9629 -2.0230 -6.3427 20 6 4.3926 -3.3287 -6.5857 21 6 5.3671 -3.5664 -7.5327 22 6 5.9198 -2.5143 -8.2417 23 6 5.4957 -1.2182 -8.0119 24 6 4.5243 -0.9644 -7.0621 25 9 4.1147 0.3026 -6.8336 26 8 2.9897 -0.8527 -4.3385 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.9193 0.2044 -1.2300 32 1 3.8070 -1.2915 -0.2718 33 1 3.8164 -1.3722 -2.0500 34 1 2.0519 0.9345 -2.5280 35 1 0.4723 0.1324 -2.3563 36 1 0.0674 -2.1082 -3.7717 37 1 1.3581 -3.1859 -5.8791 38 1 3.9624 -4.1514 -6.0338 39 1 5.6996 -4.5764 -7.7212 40 1 6.6827 -2.7069 -8.9815 41 1 5.9277 -0.4023 -8.5725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271162381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:42 Heat of formation + Delta-G solvation = 5.357695 kcal Electronic energy + Delta-G solvation = -23998.702633 eV Core-core repulsion = 20374.092554 eV Total energy + Delta-G solvation = -3624.610079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.02401 -42.30928 -39.07853 -37.04363 -33.12567 -33.04157 -32.11610 -30.86594 -29.69805 -28.82232 -26.41531 -24.69881 -23.66540 -23.15400 -22.33683 -21.27782 -20.17478 -19.40048 -18.07580 -17.08415 -16.58998 -16.36645 -15.89593 -15.65947 -15.35833 -15.04489 -14.64263 -14.17671 -14.03590 -13.75402 -13.39583 -13.09364 -12.99558 -12.61979 -12.54081 -12.43525 -12.19430 -12.08685 -11.58099 -11.37828 -11.11527 -11.01127 -10.76600 -10.68962 -10.18674 -10.07752 -9.94294 -9.79742 -9.43663 -9.08409 -8.90908 -8.46140 -7.93576 -7.26389 -6.03445 -4.08019 0.60243 0.88279 1.94408 2.82272 2.95577 3.29963 3.36564 3.39145 3.41029 3.95727 4.39178 4.44920 4.46207 4.65721 4.88821 4.98740 5.10236 5.16207 5.22368 5.29768 5.44527 5.70547 5.71646 5.78484 5.90472 5.97069 5.99675 6.04705 6.20392 6.22168 6.29239 6.39770 6.54086 6.73632 6.78176 6.79737 7.00407 7.08638 7.39519 7.45945 7.64771 7.80164 8.13166 8.26909 8.52334 8.97753 9.56937 11.03448 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025659 B = 0.002986 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.968819 B = 9375.416948 C = 9656.156867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.531 5.531 13 C 0.036 3.964 14 C 0.122 3.878 15 C 0.033 3.967 16 C -0.204 4.204 17 C -0.174 4.174 18 C -0.007 4.007 19 C -0.040 4.040 20 C -0.068 4.068 21 C -0.130 4.130 22 C -0.087 4.087 23 C -0.156 4.156 24 C 0.117 3.883 25 F -0.129 7.129 26 O -0.164 6.164 27 H 0.009 0.991 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.261 0.739 31 H 0.013 0.987 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.360 -6.570 -21.366 23.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.256 5.256 13 C -0.112 4.112 14 C -0.006 4.006 15 C -0.018 4.018 16 C -0.224 4.224 17 C -0.193 4.193 18 C -0.056 4.056 19 C -0.041 4.041 20 C -0.086 4.086 21 C -0.148 4.148 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.097 3.903 25 F -0.107 7.107 26 O -0.060 6.060 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.311 -6.669 -21.129 23.037 hybrid contribution 0.412 0.543 0.863 1.100 sum 6.723 -6.126 -20.266 22.213 Atomic orbital electron populations 1.21889 0.97555 0.99884 1.00021 1.19300 0.92455 0.92140 0.85454 0.98106 1.21127 1.31142 1.12380 0.89592 0.91750 1.24926 0.95153 0.95083 0.99029 1.69885 1.36841 1.23009 1.23506 0.86503 0.78461 0.80092 0.82411 1.20770 1.21223 1.19803 1.62215 1.09868 1.52301 1.01240 1.22250 0.88269 0.99021 1.01663 1.20747 1.01961 0.92416 0.85481 1.22851 0.83913 1.00161 0.94897 1.21438 1.02654 0.99738 0.98597 1.21701 0.94109 1.02951 1.00546 1.19950 0.96599 0.95829 0.93271 1.17834 0.97101 0.93274 0.95918 1.21154 0.95611 0.94708 0.97090 1.21138 0.97216 0.99800 0.96675 1.21120 0.98968 0.91526 0.98927 1.21110 0.98304 0.98820 0.99212 1.17867 0.96312 0.78970 0.97110 1.91545 1.89120 1.36532 1.93552 1.84114 1.37947 1.49372 1.34557 0.97235 0.94408 0.89415 0.92922 0.96867 0.90151 0.93857 0.94189 0.87407 0.83126 0.83555 0.84340 0.84750 0.84774 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.76 37.16 0.33 -2.92 16 2 C 0.21 5.34 2.06 -68.86 -0.14 5.20 16 3 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 4 C -0.50 -13.76 7.88 -34.44 -0.27 -14.03 16 5 H 0.06 1.76 6.40 -52.49 -0.34 1.42 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.53 -11.75 4.61 -237.73 -1.10 -12.85 16 13 C 0.04 0.77 9.09 60.07 0.55 1.32 16 14 C 0.12 2.33 5.31 -4.98 -0.03 2.31 16 15 C 0.03 0.59 5.89 -35.55 -0.21 0.38 16 16 C -0.20 -3.28 10.78 -39.80 -0.43 -3.70 16 17 C -0.17 -2.50 10.75 -39.38 -0.42 -2.92 16 18 C -0.01 -0.10 6.37 -36.50 -0.23 -0.34 16 19 C -0.04 -0.52 5.80 -104.92 -0.61 -1.13 16 20 C -0.07 -0.66 9.70 -39.19 -0.38 -1.04 16 21 C -0.13 -0.98 10.03 -39.63 -0.40 -1.37 16 22 C -0.09 -0.63 10.04 -39.50 -0.40 -1.03 16 23 C -0.16 -1.44 10.01 -39.57 -0.40 -1.83 16 24 C 0.12 1.47 7.28 -39.02 -0.28 1.19 16 25 F -0.13 -1.90 16.80 2.25 0.04 -1.86 16 26 O -0.16 -2.97 10.02 4.59 0.05 -2.92 16 27 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 1.77 6.10 -51.93 -0.32 1.45 16 33 H 0.04 0.86 6.79 -51.93 -0.35 0.51 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.11 1.96 5.83 -51.93 -0.30 1.66 16 36 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -30.34 345.27 -8.93 -39.27 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.31 Total: -0.03 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.42 Total: -18.39 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.47 Total: -37.51 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.05 Total: -2.92 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.34 -8.93 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271162381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.625 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds