Wall clock time and date at job start Tue Mar 31 2020 08:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46949 * 2 1 4 4 C 1.50701 * 109.46968 * 119.99999 * 2 1 3 5 5 H 1.07992 * 120.00032 * 119.99930 * 4 2 1 6 6 C 1.37879 * 119.99860 * 300.00280 * 4 2 1 7 7 N 1.31514 * 120.00226 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47235 * 89.99499 * 8 6 4 10 10 H 1.48503 * 109.46894 * 209.99733 * 8 6 4 11 11 H 1.48503 * 109.46830 * 329.99568 * 8 6 4 12 12 N 1.46892 * 109.47134 * 240.00135 * 2 1 3 13 13 C 1.46901 * 111.00080 * 183.95660 * 12 2 1 14 14 C 1.46897 * 111.00342 * 59.99743 * 12 2 1 15 15 C 1.50704 * 109.47508 * 190.00091 * 14 12 2 16 16 C 1.34715 * 125.66367 * 90.00084 * 15 14 12 17 17 C 1.40948 * 107.03283 * 180.02562 * 16 15 14 18 18 C 1.35955 * 106.73804 * 0.02562 * 17 16 15 19 19 C 1.47782 * 125.93066 * 180.02562 * 18 17 16 20 20 C 1.39582 * 120.15592 * 310.01519 * 19 18 17 21 21 C 1.37947 * 119.87714 * 179.97438 * 20 19 18 22 22 C 1.38383 * 120.19161 * 0.02720 * 21 20 19 23 23 C 1.38300 * 120.32340 * 359.67682 * 22 21 20 24 24 C 1.38209 * 120.11874 * 0.59935 * 23 22 21 25 25 F 1.35104 * 120.09848 * 179.69716 * 24 23 22 26 26 O 1.34329 * 125.65942 * 270.31210 * 15 14 12 27 27 H 1.08997 * 109.47063 * 59.99910 * 1 2 3 28 28 H 1.09000 * 109.46949 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46803 * 300.00205 * 1 2 3 30 30 H 0.97001 * 120.00289 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47163 * 296.04246 * 13 12 2 32 32 H 1.08998 * 109.47382 * 56.04056 * 13 12 2 33 33 H 1.09003 * 109.47222 * 176.04446 * 13 12 2 34 34 H 1.08998 * 109.47064 * 70.00181 * 14 12 2 35 35 H 1.08999 * 109.47126 * 310.00422 * 14 12 2 36 36 H 1.07999 * 126.48776 * 0.02562 * 16 15 14 37 37 H 1.07998 * 126.63349 * 179.97438 * 17 16 15 38 38 H 1.08008 * 120.06207 * 0.02562 * 20 19 18 39 39 H 1.07996 * 119.90167 * 180.02562 * 21 20 19 40 40 H 1.08003 * 119.83857 * 179.97438 * 22 21 20 41 41 H 1.08002 * 119.93942 * 180.32290 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5440 4.4119 10 1 1.3443 -0.9489 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8911 -3.6159 16 6 1.0479 -1.8351 -4.1331 17 6 1.7218 -2.3989 -5.2351 18 6 2.9189 -1.7614 -5.3300 19 6 3.9629 -2.0230 -6.3427 20 6 4.3926 -3.3287 -6.5857 21 6 5.3671 -3.5664 -7.5327 22 6 5.9198 -2.5143 -8.2417 23 6 5.4957 -1.2182 -8.0119 24 6 4.5243 -0.9644 -7.0621 25 9 4.1147 0.3026 -6.8336 26 8 2.9897 -0.8527 -4.3385 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1614 3.4844 31 1 3.9193 0.2044 -1.2300 32 1 3.8070 -1.2915 -0.2718 33 1 3.8164 -1.3722 -2.0500 34 1 2.0519 0.9345 -2.5280 35 1 0.4723 0.1324 -2.3563 36 1 0.0674 -2.1082 -3.7717 37 1 1.3581 -3.1859 -5.8791 38 1 3.9624 -4.1514 -6.0338 39 1 5.6996 -4.5764 -7.7212 40 1 6.6827 -2.7069 -8.9815 41 1 5.9277 -0.4023 -8.5725 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271162381.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:42 Heat of formation + Delta-G solvation = -11.131507 kcal Electronic energy + Delta-G solvation = -23999.417658 eV Core-core repulsion = 20374.092554 eV Total energy + Delta-G solvation = -3625.325105 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.00127 -43.55169 -39.80925 -38.82971 -35.00204 -34.19430 -33.29642 -31.61104 -31.34946 -30.38103 -27.94748 -26.53463 -25.17199 -24.05971 -23.36304 -22.48751 -21.60468 -21.03625 -19.00454 -18.46694 -17.92765 -17.58567 -17.24692 -16.78429 -16.65035 -16.45453 -15.95490 -15.52497 -15.46475 -15.00589 -14.75726 -14.28868 -14.22270 -14.00029 -13.92979 -13.79552 -13.33860 -13.13558 -12.97777 -12.84880 -12.73721 -12.64568 -12.57396 -12.14580 -12.09844 -11.99784 -11.86535 -10.96397 -10.90319 -10.55182 -10.32491 -9.84923 -9.19007 -8.99986 -8.12846 -6.24942 -0.21918 0.17556 0.76730 1.42233 1.43193 1.54014 1.63739 1.84959 2.42088 2.62176 3.15162 3.17724 3.31334 3.49300 3.75125 3.84748 4.03668 4.10333 4.28085 4.30189 4.34731 4.40339 4.50421 4.61262 4.64582 4.83206 4.88664 4.95928 4.96399 4.99173 5.02635 5.09567 5.12749 5.17407 5.31135 5.39411 5.46497 5.57132 5.68630 5.72410 5.85001 6.12906 6.22442 6.28546 6.58589 6.87104 7.43864 8.93171 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025659 B = 0.002986 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.968819 B = 9375.416948 C = 9656.156867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.216 3.784 3 H -0.033 1.033 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.534 5.534 13 C 0.046 3.954 14 C 0.128 3.872 15 C -0.002 4.002 16 C -0.196 4.196 17 C -0.176 4.176 18 C -0.008 4.008 19 C -0.074 4.074 20 C -0.070 4.070 21 C -0.119 4.119 22 C -0.073 4.073 23 C -0.156 4.156 24 C 0.082 3.918 25 F -0.153 7.153 26 O -0.189 6.189 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.263 0.737 31 H 0.006 0.994 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.116 0.884 36 H 0.165 0.835 37 H 0.179 0.821 38 H 0.151 0.849 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -9.078 -23.329 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.109 3.891 3 H -0.016 1.016 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.193 1.193 12 N -0.259 5.259 13 C -0.103 4.103 14 C 0.000 4.000 15 C -0.053 4.053 16 C -0.215 4.215 17 C -0.194 4.194 18 C -0.057 4.057 19 C -0.075 4.075 20 C -0.088 4.088 21 C -0.137 4.137 22 C -0.091 4.091 23 C -0.175 4.175 24 C 0.063 3.937 25 F -0.132 7.132 26 O -0.086 6.086 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.134 0.866 36 H 0.182 0.818 37 H 0.196 0.804 38 H 0.168 0.832 39 H 0.189 0.811 40 H 0.192 0.808 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.470 -9.183 -23.108 25.963 hybrid contribution 0.158 1.270 1.288 1.816 sum 7.629 -7.912 -21.819 24.431 Atomic orbital electron populations 1.21700 0.96589 0.99748 1.00136 1.19121 0.93190 0.90282 0.86467 1.01588 1.21386 1.31379 1.12428 0.90807 0.92257 1.25696 0.95275 0.95751 1.01843 1.70008 1.37582 1.24081 1.24191 0.85509 0.77975 0.79064 0.78804 1.20305 1.20680 1.19298 1.62158 1.10199 1.52156 1.01421 1.22138 0.87985 0.98645 1.01492 1.20644 1.02144 0.92245 0.84940 1.22561 0.85131 1.01883 0.95683 1.21727 1.02799 0.98521 0.98498 1.22031 0.93384 1.03589 1.00434 1.20676 0.97808 0.94602 0.92629 1.18064 0.98141 0.94847 0.96404 1.21407 0.96110 0.93537 0.97727 1.21607 0.95470 1.01686 0.94893 1.21636 0.98589 0.90284 0.98598 1.21428 0.97163 1.00631 0.98237 1.18320 0.98184 0.78104 0.99122 1.91476 1.89673 1.38081 1.93984 1.84073 1.38281 1.50690 1.35559 0.94607 0.94469 0.91790 0.92809 0.97522 0.91316 0.92638 0.95058 0.86621 0.81755 0.80385 0.83165 0.81091 0.80849 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.76 71.98 0.63 -5.38 16 2 C 0.22 11.20 2.06 44.17 0.09 11.29 16 3 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 16 4 C -0.52 -29.08 7.88 25.60 0.20 -28.88 16 5 H 0.06 3.30 6.40 -2.91 -0.02 3.28 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -52.97 11.32 21.45 0.24 -52.73 16 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 N -0.53 -24.25 4.61 -906.04 -4.18 -28.43 16 13 C 0.05 2.00 9.09 127.69 1.16 3.16 16 14 C 0.13 5.03 5.31 85.56 0.45 5.49 16 15 C 0.00 -0.08 5.89 24.88 0.15 0.07 16 16 C -0.20 -6.15 10.78 22.13 0.24 -5.91 16 17 C -0.18 -4.84 10.75 22.40 0.24 -4.60 16 18 C -0.01 -0.24 6.37 24.27 0.15 -0.08 16 19 C -0.07 -1.85 5.80 -20.06 -0.12 -1.96 16 20 C -0.07 -1.19 9.70 22.53 0.22 -0.98 16 21 C -0.12 -1.28 10.03 22.24 0.22 -1.05 16 22 C -0.07 -0.76 10.04 22.32 0.22 -0.53 16 23 C -0.16 -2.55 10.01 22.28 0.22 -2.32 16 24 C 0.08 2.04 7.28 22.63 0.16 2.21 16 25 F -0.15 -4.73 16.80 44.97 0.76 -3.98 16 26 O -0.19 -7.04 10.02 -6.49 -0.07 -7.11 16 27 H 0.04 1.50 6.20 -2.39 -0.01 1.48 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.07 3.12 6.10 -2.39 -0.01 3.10 16 33 H 0.05 2.26 6.79 -2.39 -0.02 2.24 16 34 H 0.03 1.27 8.12 -2.39 -0.02 1.25 16 35 H 0.12 4.26 5.83 -2.39 -0.01 4.24 16 36 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.17 345.27 4.52 -63.65 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.04 Total: 10.98 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.71 Total: -28.30 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -3.94 Total: -81.15 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.07 Total: -7.11 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.76 Total: -3.98 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.17 4.52 -63.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271162381.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.514 kcal (2) G-P(sol) polarization free energy of solvation -68.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds