Wall clock time and date at job start Tue Mar 31 2020 08:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46937 * 2 1 4 4 H 1.09004 * 109.46900 * 304.99663 * 3 2 1 5 5 C 1.53002 * 109.47007 * 185.00276 * 3 2 1 6 6 C 1.47203 * 109.46910 * 174.99750 * 5 3 2 7 7 N 4.86397 * 126.40061 * 355.02272 * 2 1 3 8 8 N 1.46497 * 109.47469 * 64.99797 * 3 2 1 9 9 C 1.34780 * 119.99718 * 275.00577 * 8 3 2 10 10 O 1.21582 * 120.00269 * 359.97438 * 9 8 3 11 11 N 1.34774 * 119.99331 * 179.97438 * 9 8 3 12 12 C 1.39944 * 120.00014 * 174.73885 * 11 9 8 13 13 C 1.38966 * 120.03027 * 326.17528 * 12 11 9 14 14 C 1.38159 * 120.06319 * 179.71988 * 13 12 11 15 15 C 1.38166 * 120.14301 * 0.55160 * 14 13 12 16 16 C 1.38916 * 120.06576 * 359.72726 * 15 14 13 17 17 O 1.35753 * 120.03454 * 179.97438 * 16 15 14 18 18 C 1.34826 * 117.00079 * 185.92129 * 17 16 15 19 19 H 1.07996 * 120.00090 * 5.41153 * 18 17 16 20 20 C 1.38651 * 120.00090 * 185.40212 * 18 17 16 21 21 N 1.31557 * 119.99648 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00082 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47150 * 60.00321 * 22 20 18 24 24 H 1.48501 * 109.47079 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47173 * 300.00489 * 22 20 18 26 26 C 1.38700 * 120.04195 * 146.44816 * 12 11 9 27 27 H 1.09008 * 109.46755 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47245 * 60.00490 * 1 2 3 29 29 H 1.08991 * 109.47168 * 299.99993 * 1 2 3 30 30 H 1.08999 * 109.47245 * 119.99510 * 2 1 3 31 31 H 1.09005 * 109.47390 * 239.99967 * 2 1 3 32 32 H 1.08997 * 109.46655 * 294.99483 * 5 3 2 33 33 H 1.08994 * 109.47357 * 54.99719 * 5 3 2 34 34 H 0.97003 * 119.99986 * 94.99574 * 8 3 2 35 35 H 0.96997 * 120.00512 * 354.73281 * 11 9 8 36 36 H 1.07992 * 119.96618 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.92992 * 180.25398 * 14 13 12 38 38 H 1.07997 * 119.97134 * 179.70164 * 15 14 13 39 39 H 0.97011 * 119.99892 * 179.97438 * 21 20 18 40 40 H 1.08008 * 120.06910 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 6 4.0454 2.8305 -0.2465 7 7 4.4164 3.9002 -0.3397 8 7 1.6524 2.0976 1.2517 9 6 0.4350 2.6644 1.3668 10 8 -0.3414 2.6325 0.4317 11 7 0.0783 3.2666 2.5186 12 6 -1.1400 3.9501 2.6027 13 6 -1.6402 4.6190 1.4922 14 6 -2.8457 5.2892 1.5728 15 6 -3.5519 5.3063 2.7602 16 6 -3.0543 4.6444 3.8756 17 8 -3.7485 4.6620 5.0420 18 6 -3.1536 4.1062 6.1168 19 1 -2.1357 3.7522 6.0478 20 6 -3.8488 3.9891 7.3107 21 7 -5.0890 4.4199 7.3946 22 14 -3.0245 3.2196 8.7999 23 1 -1.8201 4.0091 9.1621 24 1 -3.9736 3.2116 9.9420 25 1 -2.6247 1.8259 8.4793 26 6 -1.8466 3.9655 3.7962 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.0029 0.9837 0.7596 33 1 3.8570 0.8801 -1.0113 34 1 2.2718 2.1233 1.9978 35 1 0.6659 3.2261 3.2893 36 1 -1.0882 4.6115 0.5640 37 1 -3.2345 5.8049 0.7072 38 1 -4.4916 5.8351 2.8215 39 1 -5.5756 4.3377 8.2299 40 1 -1.4579 3.4497 4.6619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274684736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:34 Heat of formation + Delta-G solvation = -3.866786 kcal Electronic energy + Delta-G solvation = -23892.560701 eV Core-core repulsion = 20287.470580 eV Total energy + Delta-G solvation = -3605.090121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63083 -38.95674 -37.74261 -36.57289 -35.72639 -34.24644 -32.44991 -32.13212 -30.89855 -29.21212 -28.34136 -25.32938 -24.86192 -22.69661 -21.78266 -21.05683 -20.50993 -18.77332 -17.97720 -17.85816 -17.24709 -16.64868 -15.68556 -15.33635 -15.00871 -14.77209 -14.47438 -14.29635 -14.09813 -13.95623 -13.69456 -13.48166 -13.24609 -12.95627 -12.94026 -12.42706 -12.37346 -11.95929 -11.74646 -11.65299 -11.50658 -11.33316 -11.10696 -11.03277 -10.89571 -10.79421 -10.47276 -10.02505 -9.63400 -9.45362 -9.21140 -8.79541 -7.69229 -7.11735 -6.43966 -4.03739 2.07453 2.39330 2.41617 2.44691 2.62881 3.11407 3.12144 3.15704 3.29055 3.53991 3.96071 4.14221 4.27922 4.61794 4.63049 4.76102 4.95030 5.01728 5.11039 5.22918 5.30123 5.47963 5.65170 5.71855 5.87403 6.01004 6.03600 6.10013 6.23754 6.26739 6.32473 6.44465 6.56060 6.79007 7.02509 7.11382 7.22393 7.27532 7.35743 7.44786 7.84784 7.98602 8.00960 8.61575 9.01284 9.72509 10.74154 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.003290 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.738697 B = 8508.331222 C = 9051.968101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.099 0.901 5 C -0.034 4.034 6 C 0.200 3.800 7 N -0.427 5.427 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.562 6.562 11 N -0.682 5.682 12 C 0.199 3.801 13 C -0.204 4.204 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.089 0.911 20 C 0.040 3.960 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.258 4.258 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.395 0.605 35 H 0.401 0.599 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.457 -9.912 -11.669 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.060 3.940 4 H 0.117 0.883 5 C -0.074 4.074 6 C -0.118 4.118 7 N -0.103 5.103 8 N -0.403 5.403 9 C 0.406 3.594 10 O -0.437 6.437 11 N -0.329 5.329 12 C 0.106 3.894 13 C -0.225 4.225 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.106 0.894 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.280 4.280 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.236 0.764 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.080 0.920 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 15.931 -8.242 -12.461 21.840 hybrid contribution 0.946 -0.948 1.644 2.121 sum 16.877 -9.190 -10.816 22.052 Atomic orbital electron populations 1.21789 0.94053 1.00714 1.03818 1.21970 0.97964 0.94623 1.02493 1.20857 0.90861 0.94507 0.87739 0.88294 1.19679 0.95629 0.85564 1.06567 1.29054 0.93791 0.95179 0.93806 1.81276 1.08725 1.12054 1.08254 1.45205 1.16145 1.61965 1.16989 1.15808 0.82047 0.78125 0.83425 1.90967 1.50948 1.63336 1.38453 1.42598 1.21153 1.55580 1.13560 1.17156 0.84742 0.92802 0.94736 1.20548 0.99405 1.04179 0.98360 1.20520 0.93974 0.97471 0.96192 1.20239 1.02821 1.07109 0.92057 1.19063 0.89928 0.92076 0.87433 1.84021 1.41166 1.69019 1.13800 1.21208 0.98103 1.40545 0.86988 0.89359 1.25266 0.95670 0.97142 0.98396 1.70030 1.09404 1.43196 1.27148 0.85808 0.78678 0.79351 0.79727 1.19565 1.20274 1.19596 1.20769 0.98455 1.10436 0.98307 0.93556 0.91966 0.91942 0.91421 0.90717 0.86748 0.85566 0.77075 0.76410 0.86297 0.86708 0.86448 0.91984 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.51 37.16 0.32 -1.19 16 2 C -0.13 -0.79 5.61 -26.73 -0.15 -0.94 16 3 C 0.17 1.09 2.23 -67.93 -0.15 0.94 16 4 H 0.10 0.88 7.57 -51.93 -0.39 0.48 16 5 C -0.03 -0.11 5.25 -29.52 -0.16 -0.26 16 6 C 0.20 1.59 15.14 -20.76 -0.31 1.28 16 7 N -0.43 -5.11 18.54 42.15 0.78 -4.33 16 8 N -0.75 -6.43 4.73 -58.67 -0.28 -6.71 16 9 C 0.71 9.67 6.86 -86.92 -0.60 9.07 16 10 O -0.56 -9.54 11.19 5.29 0.06 -9.48 16 11 N -0.68 -9.97 5.35 -14.24 -0.08 -10.05 16 12 C 0.20 3.79 6.27 -83.71 -0.52 3.26 16 13 C -0.20 -3.94 8.65 -39.34 -0.34 -4.28 16 14 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 15 C -0.20 -4.39 9.99 -39.36 -0.39 -4.78 16 16 C 0.17 4.11 6.64 -39.13 -0.26 3.85 16 17 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 18 C -0.39 -10.83 9.44 30.88 0.29 -10.54 16 19 H 0.09 2.23 5.30 -52.49 -0.28 1.95 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 22 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.26 -5.55 9.04 -39.21 -0.35 -5.91 16 27 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 0.72 7.84 -51.93 -0.41 0.32 16 29 H 0.06 0.84 5.64 -51.93 -0.29 0.54 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.11 0.08 8.14 -51.93 -0.42 -0.35 16 33 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.40 2.36 8.62 -40.82 -0.35 2.00 16 35 H 0.40 4.61 8.83 -40.82 -0.36 4.25 16 36 H 0.12 2.27 6.45 -52.49 -0.34 1.94 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.70 5.72 -52.48 -0.30 2.40 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -35.85 344.40 -6.53 -42.38 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.82 Total: 7.43 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -3.13 Total: -10.12 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 1.19 Total: -45.56 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.06 Total: -14.50 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.85 -6.53 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274684736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.517 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds