Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46937 * 2 1 4 4 H 1.09004 * 109.46900 * 304.99663 * 3 2 1 5 5 C 1.53002 * 109.47007 * 185.00276 * 3 2 1 6 6 C 1.47203 * 109.46910 * 174.99750 * 5 3 2 7 7 N 4.86397 * 126.40061 * 355.02272 * 2 1 3 8 8 N 1.46497 * 109.47469 * 64.99797 * 3 2 1 9 9 C 1.34780 * 119.99718 * 275.00577 * 8 3 2 10 10 O 1.21582 * 120.00269 * 359.97438 * 9 8 3 11 11 N 1.34774 * 119.99331 * 179.97438 * 9 8 3 12 12 C 1.39944 * 120.00014 * 174.73885 * 11 9 8 13 13 C 1.38966 * 120.03027 * 326.17528 * 12 11 9 14 14 C 1.38159 * 120.06319 * 179.71988 * 13 12 11 15 15 C 1.38166 * 120.14301 * 0.55160 * 14 13 12 16 16 C 1.38916 * 120.06576 * 359.72726 * 15 14 13 17 17 O 1.35753 * 120.03454 * 179.97438 * 16 15 14 18 18 C 1.34826 * 117.00079 * 185.92129 * 17 16 15 19 19 H 1.07996 * 120.00090 * 5.41153 * 18 17 16 20 20 C 1.38651 * 120.00090 * 185.40212 * 18 17 16 21 21 N 1.31557 * 119.99648 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00082 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47150 * 60.00321 * 22 20 18 24 24 H 1.48501 * 109.47079 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47173 * 300.00489 * 22 20 18 26 26 C 1.38700 * 120.04195 * 146.44816 * 12 11 9 27 27 H 1.09008 * 109.46755 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47245 * 60.00490 * 1 2 3 29 29 H 1.08991 * 109.47168 * 299.99993 * 1 2 3 30 30 H 1.08999 * 109.47245 * 119.99510 * 2 1 3 31 31 H 1.09005 * 109.47390 * 239.99967 * 2 1 3 32 32 H 1.08997 * 109.46655 * 294.99483 * 5 3 2 33 33 H 1.08994 * 109.47357 * 54.99719 * 5 3 2 34 34 H 0.97003 * 119.99986 * 94.99574 * 8 3 2 35 35 H 0.96997 * 120.00512 * 354.73281 * 11 9 8 36 36 H 1.07992 * 119.96618 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.92992 * 180.25398 * 14 13 12 38 38 H 1.07997 * 119.97134 * 179.70164 * 15 14 13 39 39 H 0.97011 * 119.99892 * 179.97438 * 21 20 18 40 40 H 1.08008 * 120.06910 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 6 4.0454 2.8305 -0.2465 7 7 4.4164 3.9002 -0.3397 8 7 1.6524 2.0976 1.2517 9 6 0.4350 2.6644 1.3668 10 8 -0.3414 2.6325 0.4317 11 7 0.0783 3.2666 2.5186 12 6 -1.1400 3.9501 2.6027 13 6 -1.6402 4.6190 1.4922 14 6 -2.8457 5.2892 1.5728 15 6 -3.5519 5.3063 2.7602 16 6 -3.0543 4.6444 3.8756 17 8 -3.7485 4.6620 5.0420 18 6 -3.1536 4.1062 6.1168 19 1 -2.1357 3.7522 6.0478 20 6 -3.8488 3.9891 7.3107 21 7 -5.0890 4.4199 7.3946 22 14 -3.0245 3.2196 8.7999 23 1 -1.8201 4.0091 9.1621 24 1 -3.9736 3.2116 9.9420 25 1 -2.6247 1.8259 8.4793 26 6 -1.8466 3.9655 3.7962 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 4.0029 0.9837 0.7596 33 1 3.8570 0.8801 -1.0113 34 1 2.2718 2.1233 1.9978 35 1 0.6659 3.2261 3.2893 36 1 -1.0882 4.6115 0.5640 37 1 -3.2345 5.8049 0.7072 38 1 -4.4916 5.8351 2.8215 39 1 -5.5756 4.3377 8.2299 40 1 -1.4579 3.4497 4.6619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274684736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -29.983124 kcal Electronic energy + Delta-G solvation = -23893.693190 eV Core-core repulsion = 20287.470580 eV Total energy + Delta-G solvation = -3606.222610 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.77723 -40.55836 -38.80646 -37.85876 -36.66974 -35.59330 -34.24036 -33.20896 -31.50192 -30.83327 -29.91173 -27.28977 -25.58595 -23.91420 -23.47480 -22.00288 -21.61097 -20.15398 -19.41665 -19.11338 -18.32720 -17.54296 -16.98541 -16.77435 -16.41246 -16.11585 -15.78999 -15.51592 -15.37531 -15.02694 -14.98920 -14.62804 -14.44842 -14.14776 -13.90232 -13.67645 -13.54140 -13.20556 -12.96358 -12.78600 -12.60038 -12.48802 -12.41769 -12.30402 -12.13942 -11.89116 -11.66600 -11.44409 -11.24562 -11.01904 -10.69991 -10.04911 -9.30974 -8.81915 -8.44971 -6.13901 0.47236 0.72383 1.36602 1.47648 1.53278 1.59155 1.82072 1.89511 2.13698 2.19489 2.86627 3.06770 3.19149 3.21601 3.51028 3.81612 4.12606 4.22014 4.25190 4.34397 4.46314 4.56502 4.64396 4.68086 4.75597 4.80446 4.95666 5.03971 5.07879 5.12064 5.20082 5.28996 5.38129 5.50195 5.58886 5.64067 5.69261 5.71738 5.99495 6.03019 6.23216 6.67927 6.98697 7.00325 7.54009 7.79342 8.78054 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.016745 B = 0.003290 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.738697 B = 8508.331222 C = 9051.968101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.163 3.837 4 H 0.074 0.926 5 C -0.022 4.022 6 C 0.229 3.771 7 N -0.507 5.507 8 N -0.727 5.727 9 C 0.701 3.299 10 O -0.596 6.596 11 N -0.679 5.679 12 C 0.210 3.790 13 C -0.200 4.200 14 C -0.052 4.052 15 C -0.218 4.218 16 C 0.136 3.864 17 O -0.227 6.227 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.261 4.261 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.026 0.974 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.169 0.831 34 H 0.412 0.588 35 H 0.417 0.583 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.980 -12.392 -12.480 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C 0.057 3.943 4 H 0.092 0.908 5 C -0.062 4.062 6 C -0.088 4.088 7 N -0.184 5.184 8 N -0.384 5.384 9 C 0.402 3.598 10 O -0.475 6.475 11 N -0.327 5.327 12 C 0.115 3.885 13 C -0.221 4.221 14 C -0.071 4.071 15 C -0.238 4.238 16 C 0.085 3.915 17 O -0.133 6.133 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.180 1.180 26 C -0.283 4.283 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.173 0.827 33 H 0.186 0.814 34 H 0.249 0.751 35 H 0.255 0.745 36 H 0.145 0.855 37 H 0.168 0.832 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 19.553 -10.749 -13.313 25.982 hybrid contribution -0.063 -0.220 1.577 1.594 sum 19.490 -10.969 -11.736 25.256 Atomic orbital electron populations 1.21753 0.97615 1.00130 1.00950 1.21938 0.94474 0.94362 1.05237 1.21035 0.93178 0.94407 0.85634 0.90780 1.20023 0.92511 0.83234 1.10446 1.29932 0.91854 0.95636 0.91391 1.81315 1.11312 1.14633 1.11185 1.45169 1.14337 1.60417 1.18493 1.16000 0.83235 0.78133 0.82434 1.90947 1.52429 1.64626 1.39452 1.42505 1.19941 1.55294 1.14927 1.17146 0.85845 0.92005 0.93540 1.20823 0.99357 1.03254 0.98623 1.20885 0.93384 0.96570 0.96221 1.20446 1.03419 1.07478 0.92433 1.19576 0.91148 0.93585 0.87220 1.83987 1.42969 1.71163 1.15197 1.21778 0.99063 1.40649 0.87501 0.87917 1.26611 0.96301 0.97436 1.01694 1.70190 1.11576 1.45860 1.28293 0.84648 0.77817 0.78889 0.74869 1.17970 1.19899 1.18001 1.20792 0.97911 1.10274 0.99367 0.92981 0.94192 0.95449 0.89257 0.87298 0.82700 0.81352 0.75106 0.74547 0.85497 0.83179 0.86437 0.91854 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.51 71.98 0.61 -2.18 16 2 C -0.12 -0.94 5.61 30.60 0.17 -0.76 16 3 C 0.16 1.52 2.23 44.99 0.10 1.62 16 4 H 0.07 1.14 7.57 -2.38 -0.02 1.12 16 5 C -0.02 -0.02 5.25 28.79 0.15 0.13 16 6 C 0.23 2.95 15.14 89.44 1.35 4.30 16 7 N -0.51 -11.52 18.54 20.01 0.37 -11.15 16 8 N -0.73 -10.38 4.73 -457.81 -2.17 -12.54 16 9 C 0.70 18.12 6.86 179.05 1.23 19.35 16 10 O -0.60 -19.83 11.19 -3.97 -0.04 -19.88 16 11 N -0.68 -18.88 5.35 -317.23 -1.70 -20.57 16 12 C 0.21 7.88 6.27 38.13 0.24 8.12 16 13 C -0.20 -7.53 8.65 22.43 0.19 -7.34 16 14 C -0.05 -1.95 10.03 22.23 0.22 -1.73 16 15 C -0.22 -9.69 9.99 22.42 0.22 -9.46 16 16 C 0.14 6.87 6.64 22.56 0.15 7.02 16 17 O -0.23 -13.64 9.76 -22.73 -0.22 -13.86 16 18 C -0.41 -23.75 9.44 67.92 0.64 -23.11 16 19 H 0.10 5.31 5.30 -2.91 -0.02 5.29 16 20 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 21 N -0.92 -56.36 13.67 21.61 0.30 -56.07 16 22 Si 1.02 41.81 29.55 68.60 2.03 43.84 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 26 C -0.26 -11.44 9.04 22.51 0.20 -11.23 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.04 0.91 7.84 -2.39 -0.02 0.89 16 29 H 0.03 0.70 5.64 -2.39 -0.01 0.69 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.16 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.17 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H 0.41 3.30 8.62 -92.71 -0.80 2.50 16 35 H 0.42 8.78 8.83 -92.71 -0.82 7.96 16 36 H 0.13 4.68 6.45 -2.91 -0.02 4.66 16 37 H 0.15 4.51 8.06 -2.91 -0.02 4.48 16 38 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 40 H 0.13 5.52 5.72 -2.91 -0.02 5.50 16 Total: -1.00 -86.53 344.40 4.01 -82.52 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.51 Total: 23.81 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.96 Total: -16.09 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.20 Total: -100.34 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.27 Total: -33.74 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -86.53 4.01 -82.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274684736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.541 kcal (2) G-P(sol) polarization free energy of solvation -86.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds