Wall clock time and date at job start Tue Mar 31 2020 08:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 H 1.09000 * 109.47294 * 55.00051 * 3 2 1 5 5 C 1.52999 * 109.46996 * 174.99705 * 3 2 1 6 6 C 1.47203 * 109.47042 * 185.00080 * 5 3 2 7 7 N 4.86386 * 126.40510 * 4.97629 * 2 1 3 8 8 N 1.46499 * 109.47571 * 294.99975 * 3 2 1 9 9 C 1.34782 * 119.99837 * 84.99510 * 8 3 2 10 10 O 1.21586 * 120.00068 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99677 * 180.02562 * 9 8 3 12 12 C 1.39938 * 119.99767 * 185.30642 * 11 9 8 13 13 C 1.38956 * 120.03815 * 33.56061 * 12 11 9 14 14 C 1.38157 * 120.06860 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.13773 * 359.97438 * 14 13 12 16 16 C 1.38902 * 120.07371 * 359.97438 * 15 14 13 17 17 O 1.35745 * 120.03776 * 180.02562 * 16 15 14 18 18 C 1.34834 * 117.00234 * 185.84350 * 17 16 15 19 19 H 1.08000 * 119.99901 * 5.40266 * 18 17 16 20 20 C 1.38657 * 119.99954 * 185.40692 * 18 17 16 21 21 N 1.31554 * 119.99694 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00082 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47047 * 89.99872 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00013 * 22 20 18 25 25 H 1.48502 * 109.47066 * 330.00268 * 22 20 18 26 26 C 1.38717 * 120.03291 * 213.53657 * 12 11 9 27 27 H 1.08992 * 109.47662 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46984 * 300.00321 * 1 2 3 29 29 H 1.09002 * 109.46948 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.47017 * 239.99981 * 2 1 3 31 31 H 1.09002 * 109.46948 * 120.00137 * 2 1 3 32 32 H 1.08994 * 109.47433 * 304.99999 * 5 3 2 33 33 H 1.08997 * 109.47201 * 65.00612 * 5 3 2 34 34 H 0.96995 * 120.00087 * 265.00227 * 8 3 2 35 35 H 0.97004 * 120.00263 * 5.31248 * 11 9 8 36 36 H 1.07998 * 119.96471 * 359.97438 * 13 12 11 37 37 H 1.08005 * 119.93017 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.96237 * 179.97438 * 15 14 13 39 39 H 0.97001 * 120.00321 * 179.97438 * 21 20 18 40 40 H 1.07993 * 120.06912 * 359.74456 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 6 4.0456 2.8302 0.2465 7 7 4.4167 3.8999 0.3396 8 7 1.6526 2.0975 -1.2518 9 6 0.4352 2.6644 -1.3669 10 8 -0.3412 2.6326 -0.4317 11 7 0.0786 3.2666 -2.5187 12 6 -1.1392 3.9510 -2.6025 13 6 -1.6413 4.6159 -1.4905 14 6 -2.8432 5.2923 -1.5726 15 6 -3.5493 5.3103 -2.7602 16 6 -3.0522 4.6485 -3.8756 17 8 -3.7463 4.6671 -5.0421 18 6 -3.2713 3.9069 -6.0493 19 1 -2.4285 3.2528 -5.8810 20 6 -3.8648 3.9648 -7.3010 21 7 -3.4011 3.2234 -8.2838 22 14 -5.3229 5.0955 -7.5919 23 1 -4.8363 6.4267 -8.0352 24 1 -6.1987 4.5142 -8.6408 25 1 -6.0929 5.2448 -6.3309 26 6 -1.8460 3.9668 -3.7960 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8571 0.8799 1.0113 33 1 4.0030 0.9835 -0.7596 34 1 2.2720 2.1232 -1.9977 35 1 0.6659 3.2256 -3.2896 36 1 -1.0915 4.6040 -0.5610 37 1 -3.2313 5.8086 -0.7070 38 1 -4.4888 5.8395 -2.8211 39 1 -3.8165 3.2636 -9.1595 40 1 -1.4556 3.4546 -4.6629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274684739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:36 Heat of formation + Delta-G solvation = -2.377675 kcal Electronic energy + Delta-G solvation = -23898.722161 eV Core-core repulsion = 20293.696612 eV Total energy + Delta-G solvation = -3605.025548 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65753 -39.09727 -37.80300 -36.66651 -35.76968 -34.28818 -32.48685 -32.23173 -30.89705 -29.35939 -28.53630 -25.24625 -24.86251 -22.75401 -21.76220 -21.07200 -20.51580 -18.74751 -18.04735 -17.75589 -17.46981 -16.66142 -15.75289 -15.40533 -15.14607 -14.75987 -14.41866 -14.41020 -14.09495 -13.92432 -13.62820 -13.53462 -13.24460 -13.08463 -12.92524 -12.41550 -12.29144 -12.18715 -11.94433 -11.70736 -11.61752 -11.32824 -11.17738 -11.00373 -10.91010 -10.73734 -10.28162 -10.04535 -9.66524 -9.49521 -9.21699 -8.84661 -7.76976 -7.26148 -6.42461 -4.09419 1.98386 2.30590 2.40605 2.44164 2.61425 3.21679 3.24939 3.27405 3.41405 3.54506 4.12588 4.24077 4.28442 4.53248 4.62872 4.76664 4.89964 4.95863 5.02838 5.08246 5.23607 5.47724 5.62931 5.66473 5.88353 5.93601 6.00591 6.02776 6.16537 6.19589 6.29728 6.43005 6.46507 6.70108 6.92814 7.15134 7.22847 7.23403 7.26766 7.62221 7.77964 7.96852 8.03416 8.59324 8.93383 9.56351 10.65350 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003115 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.497586 B = 8987.992306 C = 9263.839565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.167 3.833 4 H 0.099 0.901 5 C -0.034 4.034 6 C 0.200 3.800 7 N -0.427 5.427 8 N -0.745 5.745 9 C 0.706 3.294 10 O -0.563 6.563 11 N -0.682 5.682 12 C 0.199 3.801 13 C -0.197 4.197 14 C -0.064 4.064 15 C -0.202 4.202 16 C 0.175 3.825 17 O -0.217 6.217 18 C -0.389 4.389 19 H 0.104 0.896 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.246 4.246 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.115 0.885 34 H 0.396 0.604 35 H 0.403 0.597 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.279 0.721 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -6.747 14.567 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.061 3.939 4 H 0.117 0.883 5 C -0.075 4.075 6 C -0.118 4.118 7 N -0.103 5.103 8 N -0.402 5.402 9 C 0.407 3.593 10 O -0.438 6.438 11 N -0.329 5.329 12 C 0.105 3.895 13 C -0.218 4.218 14 C -0.083 4.083 15 C -0.222 4.222 16 C 0.122 3.878 17 O -0.122 6.122 18 C -0.464 4.464 19 H 0.122 0.878 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.183 1.183 26 C -0.268 4.268 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.230 0.770 35 H 0.238 0.762 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.403 -5.135 15.296 20.351 hybrid contribution 0.043 -0.191 -1.247 1.263 sum 12.446 -5.326 14.049 19.510 Atomic orbital electron populations 1.21789 0.94069 1.00740 1.03770 1.21970 0.97956 0.94613 1.02542 1.20857 0.90883 0.94521 0.87684 0.88303 1.19682 0.95614 0.85566 1.06604 1.29054 0.93783 0.95177 0.93788 1.81274 1.08721 1.12070 1.08278 1.45200 1.16123 1.61868 1.17032 1.15800 0.82070 0.78091 0.83366 1.90963 1.50970 1.63422 1.38485 1.42600 1.21141 1.55459 1.13669 1.17171 0.84867 0.92772 0.94656 1.20622 0.99312 1.03421 0.98411 1.20523 0.94057 0.97536 0.96188 1.20229 1.02620 1.07578 0.91799 1.18788 0.89447 0.92840 0.86698 1.83614 1.48343 1.61572 1.18635 1.20720 1.17733 1.20085 0.87899 0.87834 1.24455 0.98562 0.97202 0.93757 1.69641 1.41081 1.39023 1.02205 0.86182 0.81754 0.80281 0.78718 1.19929 1.20828 1.18261 1.20896 0.97437 1.09951 0.98479 0.93530 0.92008 0.91941 0.91359 0.90708 0.85552 0.86702 0.76990 0.76192 0.86054 0.86526 0.86449 0.91097 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.51 37.16 0.32 -1.19 16 2 C -0.13 -0.80 5.61 -26.73 -0.15 -0.95 16 3 C 0.17 1.10 2.23 -67.93 -0.15 0.95 16 4 H 0.10 0.87 7.57 -51.93 -0.39 0.47 16 5 C -0.03 -0.11 5.25 -29.52 -0.16 -0.27 16 6 C 0.20 1.60 15.14 -20.76 -0.31 1.29 16 7 N -0.43 -5.12 18.54 42.15 0.78 -4.34 16 8 N -0.75 -6.47 4.73 -58.68 -0.28 -6.75 16 9 C 0.71 9.62 6.86 -86.91 -0.60 9.02 16 10 O -0.56 -9.41 11.18 5.29 0.06 -9.35 16 11 N -0.68 -9.95 5.35 -14.24 -0.08 -10.03 16 12 C 0.20 3.71 6.27 -83.71 -0.52 3.19 16 13 C -0.20 -3.66 8.65 -39.34 -0.34 -4.00 16 14 C -0.06 -1.16 10.03 -39.64 -0.40 -1.55 16 15 C -0.20 -4.08 9.99 -39.36 -0.39 -4.47 16 16 C 0.17 4.03 6.64 -39.13 -0.26 3.77 16 17 O -0.22 -5.67 8.58 0.05 0.00 -5.67 16 18 C -0.39 -10.80 9.90 30.89 0.31 -10.50 16 19 H 0.10 2.92 5.53 -52.49 -0.29 2.63 16 20 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.12 13.96 55.48 0.77 -24.35 16 22 Si 0.91 21.54 28.62 -169.99 -4.86 16.68 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.26 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.25 -5.22 9.04 -39.20 -0.35 -5.57 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.71 7.84 -51.93 -0.41 0.31 16 29 H 0.06 0.84 5.65 -51.93 -0.29 0.55 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.13 0.06 8.14 -51.93 -0.42 -0.37 16 33 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.40 2.43 8.62 -40.82 -0.35 2.08 16 35 H 0.40 4.75 8.83 -40.82 -0.36 4.38 16 36 H 0.12 2.24 6.43 -52.49 -0.34 1.90 16 37 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.14 2.94 5.71 -52.49 -0.30 2.64 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -34.59 343.24 -6.37 -40.96 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.83 Total: 6.32 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.11 Total: -8.64 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 1.20 Total: -45.46 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.06 Total: -15.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.59 -6.37 -40.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274684739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.580 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds