Wall clock time and date at job start Tue Mar 31 2020 08:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47290 * 2 1 4 4 H 1.09000 * 109.47294 * 55.00051 * 3 2 1 5 5 C 1.52999 * 109.46996 * 174.99705 * 3 2 1 6 6 C 1.47203 * 109.47042 * 185.00080 * 5 3 2 7 7 N 4.86386 * 126.40510 * 4.97629 * 2 1 3 8 8 N 1.46499 * 109.47571 * 294.99975 * 3 2 1 9 9 C 1.34782 * 119.99837 * 84.99510 * 8 3 2 10 10 O 1.21586 * 120.00068 * 0.02562 * 9 8 3 11 11 N 1.34777 * 119.99677 * 180.02562 * 9 8 3 12 12 C 1.39938 * 119.99767 * 185.30642 * 11 9 8 13 13 C 1.38956 * 120.03815 * 33.56061 * 12 11 9 14 14 C 1.38157 * 120.06860 * 179.97438 * 13 12 11 15 15 C 1.38169 * 120.13773 * 359.97438 * 14 13 12 16 16 C 1.38902 * 120.07371 * 359.97438 * 15 14 13 17 17 O 1.35745 * 120.03776 * 180.02562 * 16 15 14 18 18 C 1.34834 * 117.00234 * 185.84350 * 17 16 15 19 19 H 1.08000 * 119.99901 * 5.40266 * 18 17 16 20 20 C 1.38657 * 119.99954 * 185.40692 * 18 17 16 21 21 N 1.31554 * 119.99694 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00082 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47047 * 89.99872 * 22 20 18 24 24 H 1.48498 * 109.47278 * 210.00013 * 22 20 18 25 25 H 1.48502 * 109.47066 * 330.00268 * 22 20 18 26 26 C 1.38717 * 120.03291 * 213.53657 * 12 11 9 27 27 H 1.08992 * 109.47662 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46984 * 300.00321 * 1 2 3 29 29 H 1.09002 * 109.46948 * 59.99863 * 1 2 3 30 30 H 1.08993 * 109.47017 * 239.99981 * 2 1 3 31 31 H 1.09002 * 109.46948 * 120.00137 * 2 1 3 32 32 H 1.08994 * 109.47433 * 304.99999 * 5 3 2 33 33 H 1.08997 * 109.47201 * 65.00612 * 5 3 2 34 34 H 0.96995 * 120.00087 * 265.00227 * 8 3 2 35 35 H 0.97004 * 120.00263 * 5.31248 * 11 9 8 36 36 H 1.07998 * 119.96471 * 359.97438 * 13 12 11 37 37 H 1.08005 * 119.93017 * 180.02562 * 14 13 12 38 38 H 1.08000 * 119.96237 * 179.97438 * 15 14 13 39 39 H 0.97001 * 120.00321 * 179.97438 * 21 20 18 40 40 H 1.07993 * 120.06912 * 359.74456 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 6 4.0456 2.8302 0.2465 7 7 4.4167 3.8999 0.3396 8 7 1.6526 2.0975 -1.2518 9 6 0.4352 2.6644 -1.3669 10 8 -0.3412 2.6326 -0.4317 11 7 0.0786 3.2666 -2.5187 12 6 -1.1392 3.9510 -2.6025 13 6 -1.6413 4.6159 -1.4905 14 6 -2.8432 5.2923 -1.5726 15 6 -3.5493 5.3103 -2.7602 16 6 -3.0522 4.6485 -3.8756 17 8 -3.7463 4.6671 -5.0421 18 6 -3.2713 3.9069 -6.0493 19 1 -2.4285 3.2528 -5.8810 20 6 -3.8648 3.9648 -7.3010 21 7 -3.4011 3.2234 -8.2838 22 14 -5.3229 5.0955 -7.5919 23 1 -4.8363 6.4267 -8.0352 24 1 -6.1987 4.5142 -8.6408 25 1 -6.0929 5.2448 -6.3309 26 6 -1.8460 3.9668 -3.7960 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8571 0.8799 1.0113 33 1 4.0030 0.9835 -0.7596 34 1 2.2720 2.1232 -1.9977 35 1 0.6659 3.2256 -3.2896 36 1 -1.0915 4.6040 -0.5610 37 1 -3.2313 5.8086 -0.7070 38 1 -4.4888 5.8395 -2.8211 39 1 -3.8165 3.2636 -9.1595 40 1 -1.4556 3.4546 -4.6629 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274684739.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:35 Heat of formation + Delta-G solvation = -26.934286 kcal Electronic energy + Delta-G solvation = -23899.787015 eV Core-core repulsion = 20293.696612 eV Total energy + Delta-G solvation = -3606.090403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.80700 -40.66730 -38.87694 -37.90549 -36.68591 -35.60729 -34.40784 -33.23044 -31.51197 -30.95398 -30.02980 -27.19070 -25.60093 -23.95873 -23.39757 -22.00343 -21.61201 -20.16590 -19.38701 -19.31236 -18.36667 -17.55692 -17.10561 -16.81909 -16.45278 -16.10303 -15.76543 -15.65374 -15.27926 -15.03314 -15.00562 -14.68916 -14.49180 -14.17991 -13.98606 -13.90837 -13.66738 -13.30011 -12.98329 -12.83220 -12.70524 -12.47249 -12.41658 -12.31889 -12.06330 -11.89949 -11.68493 -11.51453 -11.24575 -11.07774 -10.79521 -10.06205 -9.36235 -8.87374 -8.49059 -6.21449 0.44463 0.66956 1.33503 1.37091 1.53918 1.58217 1.81186 1.88687 2.11440 2.29738 2.79549 3.05395 3.09668 3.12675 3.21480 3.80690 4.11410 4.21099 4.24162 4.32396 4.43360 4.55516 4.61362 4.66841 4.71902 4.79392 4.91036 4.96514 5.06923 5.18944 5.27850 5.35051 5.38375 5.50768 5.57753 5.63132 5.67198 5.76062 5.89140 6.01347 6.24568 6.66997 6.85657 6.96421 7.51259 7.59419 8.62267 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020530 B = 0.003115 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.497586 B = 8987.992306 C = 9263.839565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.164 3.836 4 H 0.076 0.924 5 C -0.023 4.023 6 C 0.229 3.771 7 N -0.506 5.506 8 N -0.728 5.728 9 C 0.702 3.298 10 O -0.595 6.595 11 N -0.681 5.681 12 C 0.206 3.794 13 C -0.192 4.192 14 C -0.053 4.053 15 C -0.205 4.205 16 C 0.142 3.858 17 O -0.240 6.240 18 C -0.398 4.398 19 H 0.082 0.918 20 C 0.013 3.987 21 N -0.921 5.921 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.262 1.262 26 C -0.257 4.257 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.170 0.830 33 H 0.154 0.846 34 H 0.411 0.589 35 H 0.416 0.584 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.284 0.716 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.973 -7.536 16.440 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.058 3.942 4 H 0.094 0.906 5 C -0.063 4.063 6 C -0.088 4.088 7 N -0.184 5.184 8 N -0.385 5.385 9 C 0.403 3.597 10 O -0.473 6.473 11 N -0.329 5.329 12 C 0.110 3.890 13 C -0.213 4.213 14 C -0.071 4.071 15 C -0.225 4.225 16 C 0.092 3.908 17 O -0.148 6.148 18 C -0.474 4.474 19 H 0.100 0.900 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.279 4.279 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.128 0.872 32 H 0.187 0.813 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.253 0.747 36 H 0.146 0.854 37 H 0.174 0.826 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.718 -5.952 17.195 22.788 hybrid contribution -0.198 -0.042 -1.543 1.557 sum 13.520 -5.994 15.651 21.533 Atomic orbital electron populations 1.21751 0.97569 1.00149 1.00950 1.21941 0.94537 0.94398 1.05208 1.21039 0.93179 0.94392 0.85600 0.90581 1.20022 0.92537 0.83277 1.10424 1.29918 0.91863 0.95626 0.91394 1.81309 1.11283 1.14610 1.11186 1.45195 1.14382 1.60393 1.18525 1.15985 0.83237 0.78101 0.82399 1.90937 1.52356 1.64663 1.39374 1.42563 1.20112 1.55311 1.14910 1.17197 0.85886 0.92295 0.93628 1.20898 0.99530 1.02536 0.98368 1.20952 0.93191 0.96424 0.96559 1.20504 1.03414 1.07172 0.91425 1.19323 0.90415 0.94428 0.86654 1.83557 1.49478 1.62426 1.19297 1.20682 1.17387 1.20450 0.88894 0.90022 1.25230 1.01213 0.98727 0.93431 1.69716 1.42828 1.40807 1.02824 0.85258 0.78585 0.78617 0.78553 1.19143 1.19310 1.18667 1.20859 0.97676 1.10252 0.99098 0.92991 0.93998 0.95570 0.89449 0.87185 0.81260 0.82849 0.75199 0.74743 0.85371 0.82581 0.84935 0.90600 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.51 71.98 0.61 -2.25 16 2 C -0.12 -1.03 5.61 30.59 0.17 -0.86 16 3 C 0.16 1.62 2.23 44.99 0.10 1.73 16 4 H 0.08 1.18 7.57 -2.39 -0.02 1.16 16 5 C -0.02 -0.04 5.25 28.79 0.15 0.11 16 6 C 0.23 3.07 15.14 89.44 1.35 4.42 16 7 N -0.51 -11.71 18.54 20.01 0.37 -11.34 16 8 N -0.73 -11.12 4.73 -457.82 -2.17 -13.29 16 9 C 0.70 18.61 6.86 179.05 1.23 19.84 16 10 O -0.60 -19.74 11.18 -3.99 -0.04 -19.78 16 11 N -0.68 -19.74 5.35 -317.23 -1.70 -21.44 16 12 C 0.21 7.69 6.27 38.13 0.24 7.92 16 13 C -0.19 -6.94 8.65 22.42 0.19 -6.75 16 14 C -0.05 -1.80 10.03 22.23 0.22 -1.58 16 15 C -0.21 -8.13 9.99 22.41 0.22 -7.91 16 16 C 0.14 6.69 6.64 22.56 0.15 6.84 16 17 O -0.24 -12.99 8.58 -22.73 -0.20 -13.19 16 18 C -0.40 -23.12 9.90 67.92 0.67 -22.45 16 19 H 0.08 4.93 5.53 -2.91 -0.02 4.92 16 20 C 0.01 0.72 5.49 84.83 0.47 1.19 16 21 N -0.92 -54.13 13.96 21.61 0.30 -53.83 16 22 Si 0.97 45.09 28.62 68.60 1.96 47.05 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 26 C -0.26 -11.31 9.04 22.51 0.20 -11.10 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.96 7.84 -2.38 -0.02 0.94 16 29 H 0.03 0.69 5.65 -2.39 -0.01 0.67 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.17 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.15 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.41 3.92 8.62 -92.71 -0.80 3.12 16 35 H 0.42 9.71 8.83 -92.71 -0.82 8.89 16 36 H 0.13 4.54 6.43 -2.91 -0.02 4.52 16 37 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 40 H 0.12 5.56 5.71 -2.91 -0.02 5.54 16 Total: -1.00 -81.44 343.24 4.01 -77.43 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.51 Total: 19.22 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.99 Total: -10.83 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.19 Total: -99.90 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.24 Total: -32.97 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.96 Total: 47.05 kcal Total: -81.44 4.01 -77.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274684739.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.496 kcal (2) G-P(sol) polarization free energy of solvation -81.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds