Wall clock time and date at job start Tue Mar 31 2020 08:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 35.83047 * 3 2 1 5 5 C 1.37094 * 120.00143 * 264.38609 * 4 3 2 6 6 H 1.07999 * 120.00335 * 196.17516 * 5 4 3 7 7 C 1.38955 * 119.99993 * 16.18016 * 5 4 3 8 8 N 1.31406 * 119.99886 * 20.84756 * 7 5 4 9 9 Si 1.86795 * 120.00120 * 200.85155 * 7 5 4 10 10 H 1.48497 * 109.47083 * 84.93808 * 9 7 5 11 11 H 1.48495 * 109.47143 * 204.94479 * 9 7 5 12 12 H 1.48506 * 109.47028 * 324.93958 * 9 7 5 13 13 C 1.34780 * 119.99825 * 84.38776 * 4 3 2 14 14 O 1.21293 * 120.00048 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00306 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47308 * 180.02562 * 15 13 4 17 17 H 1.08995 * 109.47318 * 54.99323 * 16 15 13 18 18 C 1.53002 * 109.46656 * 294.99750 * 16 15 13 19 19 C 1.53001 * 109.47026 * 175.00044 * 16 15 13 20 20 C 1.50700 * 109.47037 * 184.99698 * 19 16 15 21 21 C 1.38268 * 119.98506 * 89.99631 * 20 19 16 22 22 C 1.38225 * 120.04983 * 180.02562 * 21 20 19 23 23 C 1.38217 * 120.02666 * 0.25253 * 22 21 20 24 24 C 1.38441 * 119.97432 * 359.47786 * 23 22 21 25 25 F 1.35099 * 120.03061 * 180.25481 * 24 23 22 26 26 C 1.38177 * 119.98752 * 270.02066 * 20 19 16 27 27 H 4.40639 * 5.51319 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47338 * 275.82900 * 3 2 1 29 29 H 1.09003 * 109.46944 * 155.83110 * 3 2 1 30 30 H 0.97000 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47217 * 59.99848 * 15 13 4 32 32 H 1.09005 * 109.47073 * 299.99918 * 15 13 4 33 33 H 1.08992 * 109.47602 * 60.00557 * 18 16 15 34 34 H 1.09005 * 109.46854 * 180.02562 * 18 16 15 35 35 H 1.08997 * 109.47389 * 299.99657 * 18 16 15 36 36 H 1.09001 * 109.47451 * 65.00151 * 19 16 15 37 37 H 1.09003 * 109.47024 * 304.99539 * 19 16 15 38 38 H 1.07999 * 119.97841 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.98936 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.01234 * 179.72171 * 23 22 21 41 41 H 1.07995 * 120.01466 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1189 -0.8085 5 6 3.4734 -2.3030 -0.2063 6 1 4.0693 -3.0291 -0.7394 7 6 3.0499 -2.5691 1.0901 8 7 2.0217 -1.9222 1.5912 9 14 3.9421 -3.8463 2.1206 10 1 5.1132 -3.2178 2.7829 11 1 3.0187 -4.3828 3.1524 12 1 4.4037 -4.9539 1.2455 13 6 3.2518 -0.9848 -2.1445 14 8 3.6570 -1.9116 -2.8139 15 6 2.8803 0.3170 -2.8066 16 6 3.1038 0.2036 -4.3159 17 1 2.5517 -0.6533 -4.7016 18 6 4.5961 0.0176 -4.5978 19 6 2.6104 1.4792 -5.0017 20 6 2.7168 1.3192 -6.4964 21 6 1.6548 0.7992 -7.2131 22 6 1.7511 0.6514 -8.5840 23 6 2.9113 1.0184 -9.2394 24 6 3.9732 1.5444 -8.5237 25 9 5.1059 1.9083 -9.1638 26 6 3.8757 1.6917 -7.1501 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.1035 1.0223 29 1 3.0089 0.9384 -0.4208 30 1 1.7262 -2.1077 2.4963 31 1 3.5011 1.1185 -2.4061 32 1 1.8310 0.5378 -2.6106 33 1 4.9477 -0.8910 -4.1093 34 1 4.7555 -0.0627 -5.6731 35 1 5.1484 0.8746 -4.2121 36 1 3.2216 2.3233 -4.6823 37 1 1.5706 1.6595 -4.7287 38 1 0.7493 0.5083 -6.7014 39 1 0.9212 0.2447 -9.1428 40 1 2.9880 0.8986 -10.3100 41 1 4.7051 2.0979 -6.5902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281041078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:32 Heat of formation + Delta-G solvation = -3.638950 kcal Electronic energy + Delta-G solvation = -23972.053066 eV Core-core repulsion = 20347.052863 eV Total energy + Delta-G solvation = -3625.000203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.96586 -39.55199 -38.69940 -35.92000 -34.79600 -32.18226 -31.34508 -31.20076 -30.61091 -27.60299 -26.69674 -26.30469 -24.31477 -22.78730 -22.05846 -20.16221 -18.70034 -17.85020 -17.31226 -16.58369 -16.45657 -16.25858 -16.02806 -15.66794 -14.98125 -14.66898 -14.24452 -14.09295 -13.83723 -13.69700 -13.30984 -13.22860 -12.62645 -12.39155 -12.24432 -12.10443 -11.94834 -11.67871 -11.54466 -11.31447 -11.22398 -11.02634 -10.69801 -10.47991 -10.43439 -10.34302 -10.21999 -9.36342 -9.26262 -8.99351 -8.88497 -8.72365 -8.31282 -7.85081 -6.32844 -3.84501 1.07844 1.12256 3.15700 3.25515 3.29524 3.48943 3.68613 3.92577 4.04657 4.13702 4.18736 4.57482 4.68188 4.87422 4.97098 5.04852 5.12158 5.21082 5.30186 5.37082 5.45068 5.50989 5.71006 5.76794 5.90375 5.97142 5.99500 6.02791 6.04663 6.09378 6.21638 6.26021 6.36315 6.46873 6.51238 6.75436 6.78121 6.81990 6.94082 7.03222 7.56917 8.06634 8.44176 8.79273 9.15638 9.38113 9.93978 10.68115 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.003085 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.687540 B = 9074.527397 C = 9632.801385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.110 4.110 3 C 0.231 3.769 4 N -0.443 5.443 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.865 5.865 9 Si 0.921 3.079 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.452 3.548 14 O -0.580 6.580 15 C -0.128 4.128 16 C -0.063 4.063 17 H 0.077 0.923 18 C -0.152 4.152 19 C -0.082 4.082 20 C -0.038 4.038 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.165 4.165 24 C 0.095 3.905 25 F -0.143 7.143 26 C -0.149 4.149 27 H 0.199 0.801 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 10.086 -12.729 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.112 4.112 3 C 0.107 3.893 4 N -0.162 5.162 5 C -0.441 4.441 6 H 0.122 0.878 7 C -0.174 4.174 8 N -0.504 5.504 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.241 3.759 14 O -0.464 6.464 15 C -0.169 4.169 16 C -0.082 4.082 17 H 0.096 0.904 18 C -0.209 4.209 19 C -0.120 4.120 20 C -0.039 4.039 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.184 4.184 24 C 0.076 3.924 25 F -0.122 7.122 26 C -0.168 4.168 27 H 0.216 0.784 28 H 0.129 0.871 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.884 9.620 -12.878 16.099 hybrid contribution 0.121 -0.575 0.653 0.879 sum -0.764 9.045 -12.225 15.226 Atomic orbital electron populations 1.24272 0.95380 1.04208 1.04496 1.23231 0.94385 0.96720 0.96875 1.18291 0.84194 0.88042 0.98730 1.43736 1.56101 1.11972 1.04356 1.19678 1.31098 0.96331 0.97022 0.87815 1.25263 0.95278 0.98635 0.98192 1.70077 1.21041 1.42611 1.16646 0.86028 0.79137 0.80673 0.79412 1.20316 1.21170 1.19514 1.20057 0.84055 0.89629 0.82150 1.90483 1.50921 1.42470 1.62575 1.21637 1.02306 0.97596 0.95324 1.20762 0.97728 0.96187 0.93513 0.90428 1.22005 0.95050 1.03064 1.00829 1.20832 1.02486 0.99213 0.89444 1.19803 0.92469 0.95331 0.96260 1.21186 0.99262 1.00142 0.93992 1.20986 0.96995 0.98308 0.94518 1.21086 0.93577 1.03071 1.00652 1.17718 0.83195 1.00632 0.90820 1.91486 1.49112 1.89578 1.82038 1.21082 0.99532 1.03822 0.92323 0.78436 0.87077 0.92105 0.92186 0.90550 0.90254 0.89871 0.93500 0.93864 0.90701 0.90511 0.85240 0.85175 0.85142 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.34 19.25 29.55 0.57 -4.77 16 2 C -0.11 -2.41 10.95 -37.12 -0.41 -2.82 16 3 C 0.23 4.97 4.91 -6.83 -0.03 4.94 16 4 N -0.44 -10.89 2.60 -117.94 -0.31 -11.20 16 5 C -0.31 -8.51 9.35 -14.93 -0.14 -8.65 16 6 H 0.10 2.97 7.36 -52.49 -0.39 2.59 16 7 C 0.03 0.77 4.90 -17.47 -0.09 0.69 16 8 N -0.87 -22.43 9.39 55.50 0.52 -21.91 16 9 Si 0.92 20.36 29.60 -169.99 -5.03 15.33 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.45 10.47 7.29 -10.99 -0.08 10.39 16 14 O -0.58 -15.22 13.60 5.55 0.08 -15.15 16 15 C -0.13 -2.22 3.78 -27.88 -0.11 -2.32 16 16 C -0.06 -0.97 2.03 -90.62 -0.18 -1.16 16 17 H 0.08 1.36 7.96 -51.93 -0.41 0.94 16 18 C -0.15 -2.41 8.50 37.16 0.32 -2.09 16 19 C -0.08 -0.97 4.84 -27.88 -0.13 -1.11 16 20 C -0.04 -0.45 4.71 -104.63 -0.49 -0.95 16 21 C -0.13 -1.38 9.70 -39.57 -0.38 -1.77 16 22 C -0.09 -0.88 10.04 -39.59 -0.40 -1.28 16 23 C -0.17 -1.72 10.03 -39.51 -0.40 -2.11 16 24 C 0.10 1.14 7.30 -39.42 -0.29 0.85 16 25 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 26 C -0.15 -1.76 7.94 -39.51 -0.31 -2.07 16 27 H 0.20 3.24 7.80 -54.10 -0.42 2.82 16 28 H 0.11 2.55 6.34 -51.93 -0.33 2.22 16 29 H 0.06 1.08 6.67 -51.93 -0.35 0.73 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 32 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 33 H 0.08 1.61 5.95 -51.93 -0.31 1.30 16 34 H 0.05 0.69 6.26 -51.93 -0.33 0.36 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 37 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -30.39 347.42 -7.42 -37.81 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.39 Total: 5.88 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.56 Total: -14.23 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.21 Total: -33.11 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.15 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.39 -7.42 -37.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.167 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds