Wall clock time and date at job start Tue Mar 31 2020 08:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47241 * 35.83047 * 3 2 1 5 5 C 1.37094 * 120.00143 * 264.38609 * 4 3 2 6 6 H 1.07999 * 120.00335 * 196.17516 * 5 4 3 7 7 C 1.38955 * 119.99993 * 16.18016 * 5 4 3 8 8 N 1.31406 * 119.99886 * 20.84756 * 7 5 4 9 9 Si 1.86795 * 120.00120 * 200.85155 * 7 5 4 10 10 H 1.48497 * 109.47083 * 84.93808 * 9 7 5 11 11 H 1.48495 * 109.47143 * 204.94479 * 9 7 5 12 12 H 1.48506 * 109.47028 * 324.93958 * 9 7 5 13 13 C 1.34780 * 119.99825 * 84.38776 * 4 3 2 14 14 O 1.21293 * 120.00048 * 179.97438 * 13 4 3 15 15 C 1.50697 * 120.00306 * 0.02562 * 13 4 3 16 16 C 1.53000 * 109.47308 * 180.02562 * 15 13 4 17 17 H 1.08995 * 109.47318 * 54.99323 * 16 15 13 18 18 C 1.53002 * 109.46656 * 294.99750 * 16 15 13 19 19 C 1.53001 * 109.47026 * 175.00044 * 16 15 13 20 20 C 1.50700 * 109.47037 * 184.99698 * 19 16 15 21 21 C 1.38268 * 119.98506 * 89.99631 * 20 19 16 22 22 C 1.38225 * 120.04983 * 180.02562 * 21 20 19 23 23 C 1.38217 * 120.02666 * 0.25253 * 22 21 20 24 24 C 1.38441 * 119.97432 * 359.47786 * 23 22 21 25 25 F 1.35099 * 120.03061 * 180.25481 * 24 23 22 26 26 C 1.38177 * 119.98752 * 270.02066 * 20 19 16 27 27 H 4.40639 * 5.51319 * 180.02562 * 4 1 2 28 28 H 1.08996 * 109.47338 * 275.82900 * 3 2 1 29 29 H 1.09003 * 109.46944 * 155.83110 * 3 2 1 30 30 H 0.97000 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47217 * 59.99848 * 15 13 4 32 32 H 1.09005 * 109.47073 * 299.99918 * 15 13 4 33 33 H 1.08992 * 109.47602 * 60.00557 * 18 16 15 34 34 H 1.09005 * 109.46854 * 180.02562 * 18 16 15 35 35 H 1.08997 * 109.47389 * 299.99657 * 18 16 15 36 36 H 1.09001 * 109.47451 * 65.00151 * 19 16 15 37 37 H 1.09003 * 109.47024 * 304.99539 * 19 16 15 38 38 H 1.07999 * 119.97841 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.98936 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.01234 * 179.72171 * 23 22 21 41 41 H 1.07995 * 120.01466 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1189 -0.8085 5 6 3.4734 -2.3030 -0.2063 6 1 4.0693 -3.0291 -0.7394 7 6 3.0499 -2.5691 1.0901 8 7 2.0217 -1.9222 1.5912 9 14 3.9421 -3.8463 2.1206 10 1 5.1132 -3.2178 2.7829 11 1 3.0187 -4.3828 3.1524 12 1 4.4037 -4.9539 1.2455 13 6 3.2518 -0.9848 -2.1445 14 8 3.6570 -1.9116 -2.8139 15 6 2.8803 0.3170 -2.8066 16 6 3.1038 0.2036 -4.3159 17 1 2.5517 -0.6533 -4.7016 18 6 4.5961 0.0176 -4.5978 19 6 2.6104 1.4792 -5.0017 20 6 2.7168 1.3192 -6.4964 21 6 1.6548 0.7992 -7.2131 22 6 1.7511 0.6514 -8.5840 23 6 2.9113 1.0184 -9.2394 24 6 3.9732 1.5444 -8.5237 25 9 5.1059 1.9083 -9.1638 26 6 3.8757 1.6917 -7.1501 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.1035 1.0223 29 1 3.0089 0.9384 -0.4208 30 1 1.7262 -2.1077 2.4963 31 1 3.5011 1.1185 -2.4061 32 1 1.8310 0.5378 -2.6106 33 1 4.9477 -0.8910 -4.1093 34 1 4.7555 -0.0627 -5.6731 35 1 5.1484 0.8746 -4.2121 36 1 3.2216 2.3233 -4.6823 37 1 1.5706 1.6595 -4.7287 38 1 0.7493 0.5083 -6.7014 39 1 0.9212 0.2447 -9.1428 40 1 2.9880 0.8986 -10.3100 41 1 4.7051 2.0979 -6.5902 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281041078.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:32 Heat of formation + Delta-G solvation = -18.117314 kcal Electronic energy + Delta-G solvation = -23972.680895 eV Core-core repulsion = 20347.052863 eV Total energy + Delta-G solvation = -3625.628032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87351 -40.79518 -40.06325 -37.42054 -36.33385 -33.99894 -32.97169 -32.38524 -31.44415 -29.11659 -28.04551 -27.65416 -26.10582 -23.61408 -23.11353 -21.42175 -20.27261 -19.61736 -18.40029 -18.19761 -17.73676 -17.31537 -17.06446 -16.59571 -16.52103 -16.34525 -15.87731 -15.44494 -14.91949 -14.88587 -14.59591 -14.30469 -14.04143 -13.96376 -13.67402 -13.42489 -13.23524 -12.93531 -12.82220 -12.77315 -12.50559 -12.40858 -12.23387 -12.12309 -11.86060 -11.59623 -11.50226 -11.11840 -11.03102 -10.58036 -10.16314 -9.82815 -9.76761 -9.56520 -8.28848 -5.87771 0.23121 0.30503 1.37836 1.42886 1.52822 1.96963 2.19500 2.36049 2.42268 2.65444 3.08800 3.24426 3.32899 3.73136 3.87590 3.92900 4.02534 4.09664 4.11106 4.27886 4.37412 4.45660 4.50241 4.61244 4.69209 4.80377 4.84577 4.89660 5.00006 5.04735 5.09677 5.15325 5.20406 5.22483 5.41586 5.46014 5.48304 5.50115 5.60036 5.67906 6.00433 6.11436 6.50618 7.18148 7.21451 7.50503 8.08430 8.69432 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.003085 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.687540 B = 9074.527397 C = 9632.801385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.151 4.151 3 C 0.233 3.767 4 N -0.458 5.458 5 C -0.350 4.350 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.874 5.874 9 Si 0.980 3.020 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.441 3.559 14 O -0.622 6.622 15 C -0.116 4.116 16 C -0.057 4.057 17 H 0.050 0.950 18 C -0.146 4.146 19 C -0.071 4.071 20 C -0.052 4.052 21 C -0.135 4.135 22 C -0.089 4.089 23 C -0.166 4.166 24 C 0.074 3.926 25 F -0.152 7.152 26 C -0.157 4.157 27 H 0.232 0.768 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.270 0.730 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 11.554 -12.961 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.176 5.176 5 C -0.478 4.478 6 H 0.090 0.910 7 C -0.200 4.200 8 N -0.511 5.511 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.232 3.768 14 O -0.509 6.509 15 C -0.156 4.156 16 C -0.076 4.076 17 H 0.069 0.931 18 C -0.203 4.203 19 C -0.108 4.108 20 C -0.052 4.052 21 C -0.153 4.153 22 C -0.107 4.107 23 C -0.184 4.184 24 C 0.055 3.945 25 F -0.130 7.130 26 C -0.176 4.176 27 H 0.249 0.751 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.143 11.119 -13.098 17.315 hybrid contribution 0.457 -1.063 0.678 1.341 sum -1.686 10.057 -12.420 16.070 Atomic orbital electron populations 1.25133 0.96348 1.02510 1.02752 1.23493 0.95009 0.98289 0.98484 1.18331 0.84556 0.88473 0.97575 1.43948 1.56427 1.12010 1.05253 1.19541 1.32536 0.97563 0.98148 0.90961 1.25879 0.95537 1.00294 0.98321 1.70167 1.21108 1.43090 1.16745 0.85158 0.78442 0.78246 0.77720 1.19094 1.20331 1.20575 1.21124 0.82602 0.91310 0.81776 1.90458 1.52391 1.44570 1.63463 1.21615 1.03255 0.94721 0.95967 1.20669 0.97031 0.97340 0.92513 0.93123 1.21905 0.95733 1.01752 1.00931 1.20715 1.03548 0.97390 0.89176 1.19847 0.92869 0.96248 0.96249 1.21470 0.99522 0.99619 0.94689 1.21325 0.97532 0.97485 0.94350 1.21389 0.93213 1.02088 1.01721 1.17977 0.83558 1.01745 0.91200 1.91462 1.49616 1.89808 1.82158 1.21194 0.99834 1.04041 0.92519 0.75145 0.89059 0.88322 0.91959 0.87801 0.89113 0.94056 0.92753 0.91898 0.88959 0.89012 0.84060 0.82414 0.83275 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.48 19.25 74.32 1.43 -8.05 16 2 C -0.15 -6.41 10.95 31.12 0.34 -6.06 16 3 C 0.23 9.92 4.91 84.57 0.42 10.34 16 4 N -0.46 -22.91 2.60 -645.42 -1.68 -24.58 16 5 C -0.35 -19.64 9.35 84.04 0.79 -18.86 16 6 H 0.07 4.40 7.36 -2.91 -0.02 4.38 16 7 C 0.00 0.14 4.90 84.93 0.42 0.56 16 8 N -0.87 -45.14 9.39 21.66 0.20 -44.93 16 9 Si 0.98 42.19 29.60 68.60 2.03 44.22 16 10 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.44 20.82 7.29 87.66 0.64 21.46 16 14 O -0.62 -34.18 13.60 -3.07 -0.04 -34.22 16 15 C -0.12 -3.85 3.78 29.85 0.11 -3.73 16 16 C -0.06 -1.69 2.03 -10.79 -0.02 -1.71 16 17 H 0.05 1.78 7.96 -2.39 -0.02 1.76 16 18 C -0.15 -4.60 8.50 71.98 0.61 -3.99 16 19 C -0.07 -1.51 4.84 29.85 0.14 -1.36 16 20 C -0.05 -1.13 4.71 -19.87 -0.09 -1.22 16 21 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 22 C -0.09 -1.53 10.04 22.26 0.22 -1.31 16 23 C -0.17 -3.14 10.03 22.31 0.22 -2.91 16 24 C 0.07 1.69 7.30 22.38 0.16 1.85 16 25 F -0.15 -3.71 17.27 44.97 0.78 -2.93 16 26 C -0.16 -3.52 7.94 22.31 0.18 -3.34 16 27 H 0.23 6.77 7.80 -4.43 -0.03 6.73 16 28 H 0.09 4.21 6.34 -2.39 -0.02 4.19 16 29 H 0.10 3.32 6.67 -2.39 -0.02 3.30 16 30 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 31 H 0.10 2.89 7.42 -2.39 -0.02 2.87 16 32 H 0.09 2.85 7.52 -2.38 -0.02 2.83 16 33 H 0.04 1.65 5.95 -2.39 -0.01 1.64 16 34 H 0.05 1.59 6.26 -2.38 -0.01 1.58 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.65 8.09 -2.39 -0.02 1.64 16 37 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 38 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.14 2.86 8.04 -2.91 -0.02 2.84 16 Total: -1.00 -68.26 347.42 8.10 -60.16 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 1.03 Total: 23.07 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.79 Total: -20.78 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -1.48 Total: -69.52 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -0.04 Total: -34.22 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.26 8.10 -60.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041078.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.041 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds