Wall clock time and date at job start Tue Mar 31 2020 08:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46510 * 109.46929 * 184.42626 * 3 2 1 5 5 C 1.37093 * 119.99902 * 263.92808 * 4 3 2 6 6 H 1.08001 * 120.00054 * 199.75215 * 5 4 3 7 7 C 1.38955 * 120.00289 * 19.75242 * 5 4 3 8 8 N 1.31411 * 119.99749 * 21.74354 * 7 5 4 9 9 Si 1.86799 * 120.00260 * 201.74612 * 7 5 4 10 10 H 1.48501 * 109.47146 * 89.99771 * 9 7 5 11 11 H 1.48492 * 109.47223 * 209.99934 * 9 7 5 12 12 H 1.48499 * 109.46847 * 330.00188 * 9 7 5 13 13 C 1.34775 * 119.99952 * 83.92661 * 4 3 2 14 14 O 1.21289 * 119.99824 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99883 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.46848 * 180.02562 * 15 13 4 17 17 H 1.08995 * 109.47013 * 304.99471 * 16 15 13 18 18 C 1.52997 * 109.47610 * 65.00011 * 16 15 13 19 19 C 1.53001 * 109.46897 * 185.00197 * 16 15 13 20 20 C 1.50699 * 109.47256 * 174.99861 * 19 16 15 21 21 C 1.38270 * 119.98873 * 89.99511 * 20 19 16 22 22 C 1.38226 * 120.05106 * 179.72569 * 21 20 19 23 23 C 1.38218 * 120.02580 * 359.97438 * 22 21 20 24 24 C 1.38436 * 119.97581 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.02950 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98780 * 269.72469 * 20 19 16 27 27 H 4.40646 * 5.51485 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47173 * 64.42913 * 3 2 1 29 29 H 1.08997 * 109.47500 * 304.42214 * 3 2 1 30 30 H 0.96998 * 120.00208 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47207 * 59.99733 * 15 13 4 32 32 H 1.09004 * 109.46783 * 299.99994 * 15 13 4 33 33 H 1.08994 * 109.47377 * 180.02562 * 18 16 15 34 34 H 1.08999 * 109.46927 * 300.00175 * 18 16 15 35 35 H 1.09000 * 109.47146 * 60.00068 * 18 16 15 36 36 H 1.09000 * 109.47445 * 54.99570 * 19 16 15 37 37 H 1.09000 * 109.47078 * 294.99405 * 19 16 15 38 38 H 1.08001 * 119.97154 * 359.70125 * 21 20 19 39 39 H 1.07999 * 119.98341 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.01139 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.01038 * 0.29186 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3781 0.1066 5 6 3.4802 2.0719 -1.0238 6 1 4.1230 2.9368 -0.9509 7 6 3.0045 1.6626 -2.2636 8 7 1.9239 0.9187 -2.3397 9 14 3.9010 2.1697 -3.8220 10 1 4.9275 1.1501 -4.1566 11 1 2.9288 2.2785 -4.9391 12 1 4.5594 3.4836 -3.6089 13 6 3.2416 1.9630 1.3160 14 8 3.6449 3.1035 1.4042 15 6 2.8611 1.2001 2.5587 16 6 3.0754 2.0867 3.7870 17 1 4.1028 2.4503 3.7979 18 6 2.1141 3.2756 3.7319 19 6 2.8088 1.2737 5.0555 20 6 3.1379 2.1089 6.2659 21 6 2.1630 2.8997 6.8457 22 6 2.4619 3.6620 7.9593 23 6 3.7358 3.6341 8.4950 24 6 4.7126 2.8427 7.9154 25 9 5.9579 2.8142 8.4384 26 6 4.4122 2.0799 6.7993 27 1 -1.0503 -0.0004 0.0002 28 1 3.0095 -0.4427 -0.9270 29 1 3.0096 -0.5801 0.8477 30 1 1.5916 0.6332 -3.2051 31 1 3.4816 0.3077 2.6414 32 1 1.8123 0.9091 2.4995 33 1 2.2671 3.9075 4.6068 34 1 2.3040 3.8548 2.8282 35 1 1.0866 2.9119 3.7212 36 1 3.4314 0.3790 5.0512 37 1 1.7582 0.9851 5.0880 38 1 1.1674 2.9221 6.4278 39 1 1.6995 4.2790 8.4116 40 1 3.9691 4.2300 9.3649 41 1 5.1736 1.4624 6.3461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281041081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:35 Heat of formation + Delta-G solvation = -4.575287 kcal Electronic energy + Delta-G solvation = -23975.657513 eV Core-core repulsion = 20350.616708 eV Total energy + Delta-G solvation = -3625.040805 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.96451 -39.55615 -38.69277 -35.89595 -34.78221 -32.17734 -31.41049 -31.20234 -30.54507 -27.58056 -26.69630 -26.29613 -24.33415 -22.84915 -21.97471 -20.16881 -18.67423 -17.85168 -17.36566 -16.58383 -16.39113 -16.27151 -16.02764 -15.65665 -15.01159 -14.53948 -14.36280 -14.17514 -13.80409 -13.60043 -13.34686 -13.17668 -12.58920 -12.50329 -12.25147 -12.10643 -11.86499 -11.74018 -11.55276 -11.34661 -11.12697 -11.03323 -10.66782 -10.51261 -10.44827 -10.29858 -10.22700 -9.35403 -9.23755 -9.02603 -8.89018 -8.70230 -8.29552 -7.82694 -6.31555 -3.85358 1.07644 1.11923 3.15611 3.26075 3.30521 3.48616 3.69382 3.94364 4.05191 4.13737 4.19659 4.57232 4.67692 4.87624 4.97717 5.04864 5.11893 5.20634 5.30054 5.36950 5.44834 5.51249 5.69942 5.78261 5.89880 5.97699 5.99628 6.01777 6.03882 6.16905 6.20255 6.26466 6.34495 6.46751 6.51632 6.70400 6.76910 6.82169 6.98483 7.01875 7.57909 8.09183 8.44726 8.81124 9.16527 9.38382 9.94888 10.69176 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.003097 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.439599 B = 9037.996256 C = 9571.125850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.112 4.112 3 C 0.233 3.767 4 N -0.443 5.443 5 C -0.317 4.317 6 H 0.103 0.897 7 C 0.032 3.968 8 N -0.861 5.861 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.454 3.546 14 O -0.579 6.579 15 C -0.129 4.129 16 C -0.063 4.063 17 H 0.076 0.924 18 C -0.152 4.152 19 C -0.082 4.082 20 C -0.038 4.038 21 C -0.125 4.125 22 C -0.091 4.091 23 C -0.165 4.165 24 C 0.097 3.903 25 F -0.143 7.143 26 C -0.152 4.152 27 H 0.198 0.802 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.267 0.733 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -2.232 16.414 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.114 4.114 3 C 0.109 3.891 4 N -0.162 5.162 5 C -0.444 4.444 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.499 5.499 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.243 3.757 14 O -0.463 6.463 15 C -0.170 4.170 16 C -0.082 4.082 17 H 0.095 0.905 18 C -0.209 4.209 19 C -0.120 4.120 20 C -0.038 4.038 21 C -0.143 4.143 22 C -0.109 4.109 23 C -0.184 4.184 24 C 0.078 3.922 25 F -0.122 7.122 26 C -0.171 4.171 27 H 0.215 0.785 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.637 -1.748 16.292 16.398 hybrid contribution 0.177 0.111 -0.923 0.946 sum -0.459 -1.637 15.370 15.464 Atomic orbital electron populations 1.24255 0.95353 1.02220 1.06181 1.23166 0.94348 0.98247 0.95624 1.18198 0.84302 0.84989 1.01576 1.43711 1.56254 1.10672 1.05533 1.19639 1.28338 1.13374 0.83041 0.87961 1.25281 0.94997 0.97616 0.99351 1.70085 1.17933 1.36333 1.25564 0.86047 0.79176 0.79248 0.80991 1.20389 1.21178 1.19443 1.20084 0.83869 0.87265 0.84511 1.90484 1.50873 1.18626 1.86315 1.21656 1.02508 0.98825 0.93977 1.20759 1.01276 0.95147 0.91015 0.90511 1.21988 0.97639 0.98082 1.03162 1.20831 1.02472 0.97219 0.91442 1.19802 0.92286 0.96154 0.95586 1.21190 0.99946 0.97098 0.96062 1.20988 0.95703 0.98435 0.95804 1.21081 0.93526 1.01493 1.02282 1.17705 0.79985 0.99549 0.94983 1.91486 1.39309 1.95417 1.85978 1.21076 0.98034 1.01693 0.96296 0.78468 0.87744 0.91959 0.92235 0.90634 0.90128 0.93431 0.89948 0.93804 0.90722 0.90499 0.85230 0.85199 0.85145 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.28 19.25 29.55 0.57 -4.71 16 2 C -0.11 -2.44 10.75 -37.12 -0.40 -2.84 16 3 C 0.23 4.99 4.91 -6.82 -0.03 4.96 16 4 N -0.44 -10.89 2.60 -117.93 -0.31 -11.20 16 5 C -0.32 -8.60 9.28 -14.93 -0.14 -8.73 16 6 H 0.10 2.94 7.42 -52.49 -0.39 2.55 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.45 9.59 55.50 0.53 -21.92 16 9 Si 0.92 20.38 29.61 -169.99 -5.03 15.34 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.45 10.53 7.28 -10.98 -0.08 10.45 16 14 O -0.58 -15.24 13.63 5.55 0.08 -15.17 16 15 C -0.13 -2.24 3.78 -27.88 -0.11 -2.34 16 16 C -0.06 -0.97 2.03 -90.62 -0.18 -1.16 16 17 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 18 C -0.15 -2.46 8.50 37.16 0.32 -2.14 16 19 C -0.08 -0.97 4.84 -27.88 -0.13 -1.10 16 20 C -0.04 -0.45 4.71 -104.63 -0.49 -0.94 16 21 C -0.12 -1.32 7.96 -39.57 -0.32 -1.64 16 22 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 23 C -0.17 -1.70 10.03 -39.52 -0.40 -2.10 16 24 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 25 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 26 C -0.15 -1.82 9.68 -39.51 -0.38 -2.20 16 27 H 0.20 3.25 7.80 -54.08 -0.42 2.83 16 28 H 0.10 2.37 6.60 -51.93 -0.34 2.03 16 29 H 0.06 1.09 6.69 -51.93 -0.35 0.75 16 30 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.08 1.14 7.42 -51.93 -0.39 0.75 16 32 H 0.08 1.37 7.49 -51.93 -0.39 0.98 16 33 H 0.05 0.69 6.27 -51.93 -0.33 0.36 16 34 H 0.08 1.67 5.95 -51.93 -0.31 1.36 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.13 1.21 8.03 -52.49 -0.42 0.79 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -30.58 347.62 -7.41 -37.99 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.41 Total: 5.63 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -2.55 Total: -14.15 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.23 Total: -33.11 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.08 Total: -15.17 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.58 -7.41 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.415 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds