Wall clock time and date at job start Tue Mar 31 2020 08:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46510 * 109.46929 * 184.42626 * 3 2 1 5 5 C 1.37093 * 119.99902 * 263.92808 * 4 3 2 6 6 H 1.08001 * 120.00054 * 199.75215 * 5 4 3 7 7 C 1.38955 * 120.00289 * 19.75242 * 5 4 3 8 8 N 1.31411 * 119.99749 * 21.74354 * 7 5 4 9 9 Si 1.86799 * 120.00260 * 201.74612 * 7 5 4 10 10 H 1.48501 * 109.47146 * 89.99771 * 9 7 5 11 11 H 1.48492 * 109.47223 * 209.99934 * 9 7 5 12 12 H 1.48499 * 109.46847 * 330.00188 * 9 7 5 13 13 C 1.34775 * 119.99952 * 83.92661 * 4 3 2 14 14 O 1.21289 * 119.99824 * 180.02562 * 13 4 3 15 15 C 1.50702 * 119.99883 * 0.02562 * 13 4 3 16 16 C 1.52999 * 109.46848 * 180.02562 * 15 13 4 17 17 H 1.08995 * 109.47013 * 304.99471 * 16 15 13 18 18 C 1.52997 * 109.47610 * 65.00011 * 16 15 13 19 19 C 1.53001 * 109.46897 * 185.00197 * 16 15 13 20 20 C 1.50699 * 109.47256 * 174.99861 * 19 16 15 21 21 C 1.38270 * 119.98873 * 89.99511 * 20 19 16 22 22 C 1.38226 * 120.05106 * 179.72569 * 21 20 19 23 23 C 1.38218 * 120.02580 * 359.97438 * 22 21 20 24 24 C 1.38436 * 119.97581 * 0.02562 * 23 22 21 25 25 F 1.35094 * 120.02950 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98780 * 269.72469 * 20 19 16 27 27 H 4.40646 * 5.51485 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47173 * 64.42913 * 3 2 1 29 29 H 1.08997 * 109.47500 * 304.42214 * 3 2 1 30 30 H 0.96998 * 120.00208 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47207 * 59.99733 * 15 13 4 32 32 H 1.09004 * 109.46783 * 299.99994 * 15 13 4 33 33 H 1.08994 * 109.47377 * 180.02562 * 18 16 15 34 34 H 1.08999 * 109.46927 * 300.00175 * 18 16 15 35 35 H 1.09000 * 109.47146 * 60.00068 * 18 16 15 36 36 H 1.09000 * 109.47445 * 54.99570 * 19 16 15 37 37 H 1.09000 * 109.47078 * 294.99405 * 19 16 15 38 38 H 1.08001 * 119.97154 * 359.70125 * 21 20 19 39 39 H 1.07999 * 119.98341 * 180.02562 * 22 21 20 40 40 H 1.07993 * 120.01139 * 179.97438 * 23 22 21 41 41 H 1.08003 * 120.01038 * 0.29186 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3781 0.1066 5 6 3.4802 2.0719 -1.0238 6 1 4.1230 2.9368 -0.9509 7 6 3.0045 1.6626 -2.2636 8 7 1.9239 0.9187 -2.3397 9 14 3.9010 2.1697 -3.8220 10 1 4.9275 1.1501 -4.1566 11 1 2.9288 2.2785 -4.9391 12 1 4.5594 3.4836 -3.6089 13 6 3.2416 1.9630 1.3160 14 8 3.6449 3.1035 1.4042 15 6 2.8611 1.2001 2.5587 16 6 3.0754 2.0867 3.7870 17 1 4.1028 2.4503 3.7979 18 6 2.1141 3.2756 3.7319 19 6 2.8088 1.2737 5.0555 20 6 3.1379 2.1089 6.2659 21 6 2.1630 2.8997 6.8457 22 6 2.4619 3.6620 7.9593 23 6 3.7358 3.6341 8.4950 24 6 4.7126 2.8427 7.9154 25 9 5.9579 2.8142 8.4384 26 6 4.4122 2.0799 6.7993 27 1 -1.0503 -0.0004 0.0002 28 1 3.0095 -0.4427 -0.9270 29 1 3.0096 -0.5801 0.8477 30 1 1.5916 0.6332 -3.2051 31 1 3.4816 0.3077 2.6414 32 1 1.8123 0.9091 2.4995 33 1 2.2671 3.9075 4.6068 34 1 2.3040 3.8548 2.8282 35 1 1.0866 2.9119 3.7212 36 1 3.4314 0.3790 5.0512 37 1 1.7582 0.9851 5.0880 38 1 1.1674 2.9221 6.4278 39 1 1.6995 4.2790 8.4116 40 1 3.9691 4.2300 9.3649 41 1 5.1736 1.4624 6.3461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281041081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:34 Heat of formation + Delta-G solvation = -19.341101 kcal Electronic energy + Delta-G solvation = -23976.297807 eV Core-core repulsion = 20350.616708 eV Total energy + Delta-G solvation = -3625.681099 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.87967 -40.79237 -40.06069 -37.39934 -36.32303 -34.00034 -32.96497 -32.43063 -31.40376 -29.09199 -28.03020 -27.66915 -26.12387 -23.70779 -22.98967 -21.43786 -20.24619 -19.61286 -18.46031 -18.20085 -17.74690 -17.25300 -17.05992 -16.58614 -16.55597 -16.25590 -16.00885 -15.33479 -15.10093 -14.74877 -14.51654 -14.35596 -14.07914 -13.93544 -13.71180 -13.46137 -13.24590 -12.89871 -12.81666 -12.76917 -12.54093 -12.41784 -12.17491 -12.09655 -11.89881 -11.54247 -11.53751 -11.11687 -11.01560 -10.57776 -10.16110 -9.83826 -9.74957 -9.54715 -8.28360 -5.89487 0.23670 0.30761 1.37249 1.42652 1.53073 1.97144 2.20904 2.36327 2.43028 2.66022 3.08381 3.24638 3.33011 3.73458 3.87646 3.92889 4.03990 4.07690 4.15751 4.27036 4.36191 4.44053 4.47673 4.64776 4.74677 4.78839 4.84217 4.90490 4.98255 5.01776 5.07671 5.16104 5.20276 5.23172 5.41202 5.47278 5.48376 5.50948 5.60214 5.68613 6.00996 6.12844 6.50680 7.19779 7.22009 7.50087 8.08709 8.69736 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.003097 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.439599 B = 9037.996256 C = 9571.125850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.152 4.152 3 C 0.235 3.765 4 N -0.458 5.458 5 C -0.352 4.352 6 H 0.071 0.929 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.442 3.558 14 O -0.621 6.621 15 C -0.117 4.117 16 C -0.057 4.057 17 H 0.052 0.948 18 C -0.145 4.145 19 C -0.071 4.071 20 C -0.051 4.051 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.165 4.165 24 C 0.074 3.926 25 F -0.153 7.153 26 C -0.165 4.165 27 H 0.231 0.769 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.270 0.730 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.331 -3.260 17.552 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.153 4.153 3 C 0.112 3.888 4 N -0.177 5.177 5 C -0.480 4.480 6 H 0.089 0.911 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.233 3.767 14 O -0.508 6.508 15 C -0.157 4.157 16 C -0.076 4.076 17 H 0.070 0.930 18 C -0.202 4.202 19 C -0.108 4.108 20 C -0.051 4.051 21 C -0.146 4.146 22 C -0.107 4.107 23 C -0.184 4.184 24 C 0.055 3.945 25 F -0.132 7.132 26 C -0.184 4.184 27 H 0.248 0.752 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.163 0.837 39 H 0.178 0.822 40 H 0.167 0.833 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.172 -2.812 17.436 17.794 hybrid contribution 0.601 0.487 -1.249 1.469 sum -1.571 -2.325 16.187 16.429 Atomic orbital electron populations 1.25105 0.96315 1.00490 1.04587 1.23427 0.94960 0.99804 0.97129 1.18262 0.84644 0.83561 1.02312 1.43930 1.56557 1.11841 1.05324 1.19500 1.29521 1.13882 0.85076 0.91150 1.25899 0.95317 0.97451 1.01271 1.70170 1.18117 1.36287 1.26204 0.85165 0.78312 0.78591 0.77638 1.19012 1.20462 1.20521 1.21159 0.82448 0.87236 0.85849 1.90459 1.52398 1.20777 1.87161 1.21636 1.03397 0.99225 0.91427 1.20678 0.99638 0.95091 0.92235 0.92978 1.21892 0.98732 0.98223 1.01402 1.20712 1.03951 0.96952 0.89176 1.19846 0.92466 0.96931 0.95905 1.21475 1.00392 0.96561 0.96220 1.21352 0.95976 0.98069 0.95261 1.21391 0.93462 1.00890 1.02626 1.17984 0.80161 1.00713 0.95677 1.91457 1.39978 1.95587 1.86142 1.21207 0.98482 1.02073 0.96604 0.75230 0.89649 0.88105 0.92005 0.87826 0.89021 0.91952 0.94650 0.92252 0.89270 0.88642 0.83675 0.82227 0.83283 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.41 19.25 74.32 1.43 -7.98 16 2 C -0.15 -6.41 10.75 31.12 0.33 -6.08 16 3 C 0.23 9.96 4.91 84.57 0.42 10.38 16 4 N -0.46 -22.95 2.60 -645.41 -1.68 -24.63 16 5 C -0.35 -19.81 9.28 84.04 0.78 -19.03 16 6 H 0.07 4.31 7.42 -2.91 -0.02 4.28 16 7 C 0.00 0.22 4.83 84.93 0.41 0.63 16 8 N -0.87 -45.27 9.59 21.66 0.21 -45.06 16 9 Si 0.98 42.29 29.61 68.60 2.03 44.32 16 10 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.44 20.97 7.28 87.66 0.64 21.61 16 14 O -0.62 -34.34 13.63 -3.06 -0.04 -34.38 16 15 C -0.12 -3.90 3.78 29.85 0.11 -3.79 16 16 C -0.06 -1.72 2.03 -10.79 -0.02 -1.74 16 17 H 0.05 1.81 7.95 -2.39 -0.02 1.80 16 18 C -0.15 -4.64 8.50 71.98 0.61 -4.02 16 19 C -0.07 -1.49 4.84 29.85 0.14 -1.34 16 20 C -0.05 -1.10 4.71 -19.87 -0.09 -1.19 16 21 C -0.13 -2.37 7.96 22.27 0.18 -2.19 16 22 C -0.09 -1.45 10.04 22.26 0.22 -1.22 16 23 C -0.17 -3.09 10.03 22.31 0.22 -2.86 16 24 C 0.07 1.71 7.30 22.38 0.16 1.87 16 25 F -0.15 -3.84 17.27 44.97 0.78 -3.06 16 26 C -0.16 -3.81 9.68 22.31 0.22 -3.59 16 27 H 0.23 6.79 7.80 -4.40 -0.03 6.76 16 28 H 0.09 3.90 6.60 -2.39 -0.02 3.89 16 29 H 0.10 3.37 6.69 -2.39 -0.02 3.35 16 30 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 31 H 0.10 2.86 7.42 -2.39 -0.02 2.85 16 32 H 0.09 2.90 7.49 -2.38 -0.02 2.88 16 33 H 0.06 1.75 6.27 -2.39 -0.01 1.73 16 34 H 0.03 1.46 5.95 -2.39 -0.01 1.45 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 1.62 8.08 -2.39 -0.02 1.61 16 37 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 38 H 0.15 2.19 8.03 -2.91 -0.02 2.17 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 41 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -69.14 347.62 8.09 -61.05 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 1.03 Total: 22.34 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 5.77 Total: -20.57 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -1.47 Total: -69.70 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.04 Total: -34.38 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -69.14 8.09 -61.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281041081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.708 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds