Wall clock time and date at job start Tue Mar 31 2020 08:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47306 * 139.30040 * 3 2 1 5 5 C 1.37094 * 120.00237 * 263.42642 * 4 3 2 6 6 H 1.08008 * 119.99869 * 199.30774 * 5 4 3 7 7 C 1.38944 * 120.00248 * 19.30385 * 5 4 3 8 8 N 1.31419 * 119.99666 * 16.85741 * 7 5 4 9 9 Si 1.86800 * 120.00362 * 196.85122 * 7 5 4 10 10 H 1.48496 * 109.46866 * 60.00380 * 9 7 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47390 * 300.00497 * 9 7 5 13 13 C 1.34781 * 119.99586 * 83.42007 * 4 3 2 14 14 O 1.21296 * 119.99794 * 183.47541 * 13 4 3 15 15 C 1.50696 * 120.00082 * 3.47843 * 13 4 3 16 16 H 1.08999 * 109.47316 * 22.48688 * 15 13 4 17 17 C 1.53005 * 109.47127 * 262.48328 * 15 13 4 18 18 C 1.53005 * 109.46834 * 142.48840 * 15 13 4 19 19 C 1.53002 * 109.47014 * 185.00016 * 18 15 13 20 20 C 1.50699 * 109.47461 * 179.97438 * 19 18 15 21 21 C 1.38220 * 120.01053 * 99.99463 * 20 19 18 22 22 C 1.38222 * 120.02703 * 180.02562 * 21 20 19 23 23 C 1.38267 * 120.05005 * 359.97438 * 22 21 20 24 24 C 1.38179 * 120.02247 * 0.02562 * 23 22 21 25 25 C 1.38432 * 120.01229 * 280.00336 * 20 19 18 26 26 F 1.35094 * 120.03049 * 359.97438 * 25 20 19 27 27 H 4.40637 * 5.51410 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47361 * 19.30422 * 3 2 1 29 29 H 1.08999 * 109.47169 * 259.30097 * 3 2 1 30 30 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46731 * 62.65050 * 17 15 13 32 32 H 1.08995 * 109.46794 * 182.65038 * 17 15 13 33 33 H 1.09000 * 109.46863 * 302.65313 * 17 15 13 34 34 H 1.08999 * 109.47564 * 64.99970 * 18 15 13 35 35 H 1.09003 * 109.46871 * 304.99117 * 18 15 13 36 36 H 1.09005 * 109.47392 * 59.99542 * 19 18 15 37 37 H 1.09001 * 109.46844 * 300.00195 * 19 18 15 38 38 H 1.08002 * 119.98895 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.97709 * 180.02562 * 22 21 20 40 40 H 1.07994 * 119.98916 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.00878 * 179.74495 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0480 -0.9007 5 6 3.4907 0.7347 -2.1867 6 1 4.1278 1.4021 -2.7482 7 6 3.0329 -0.4414 -2.7679 8 7 2.0155 -1.0832 -2.2384 9 14 3.8631 -1.1103 -4.3017 10 1 5.2926 -1.3872 -4.0099 11 1 3.1907 -2.3662 -4.7209 12 1 3.7659 -0.1089 -5.3939 13 6 3.2318 2.3197 -0.4649 14 8 3.5755 3.1975 -1.2281 15 6 2.9145 2.6508 0.9706 16 1 3.0185 1.7543 1.5818 17 6 1.4790 3.1713 1.0686 18 6 3.8818 3.7250 1.4720 19 6 3.6416 3.9718 2.9628 20 6 4.5947 5.0294 3.4568 21 6 4.1621 6.3334 3.6088 22 6 5.0361 7.3038 4.0615 23 6 6.3439 6.9713 4.3632 24 6 6.7786 5.6684 4.2121 25 6 5.9038 4.6954 3.7585 26 9 6.3277 3.4212 3.6106 27 1 -1.0501 -0.0001 0.0003 28 1 3.0098 -0.9690 -0.3397 29 1 3.0092 0.1916 1.0098 30 1 1.6957 -1.9041 -2.6444 31 1 0.7870 2.3895 0.7558 32 1 1.2650 3.4550 2.0990 33 1 1.3626 4.0401 0.4207 34 1 3.7161 4.6498 0.9193 35 1 4.9077 3.3896 1.3200 36 1 3.8073 3.0471 3.5155 37 1 2.6157 4.3071 3.1148 38 1 3.1407 6.5941 3.3738 39 1 4.6971 8.3223 4.1803 40 1 7.0258 7.7302 4.7172 41 1 7.8012 5.4098 4.4439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281556136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:43 Heat of formation + Delta-G solvation = -0.939074 kcal Electronic energy + Delta-G solvation = -24295.218099 eV Core-core repulsion = 20670.334972 eV Total energy + Delta-G solvation = -3624.883127 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.85829 -39.33797 -38.79736 -35.63401 -34.80455 -32.43909 -31.65626 -31.14230 -30.61588 -28.09512 -26.52181 -25.22786 -24.35911 -22.87282 -22.08806 -20.70760 -18.49324 -17.76552 -17.61130 -16.60187 -16.49801 -16.33426 -15.82483 -15.52154 -14.65826 -14.48257 -14.29692 -14.17866 -13.82877 -13.52736 -13.24392 -12.98186 -12.76410 -12.48396 -12.44390 -12.17129 -11.87714 -11.68539 -11.58310 -11.31825 -11.11263 -10.96947 -10.96119 -10.52457 -10.41194 -10.31905 -10.12673 -9.30168 -9.23826 -9.06030 -8.80606 -8.68758 -8.25026 -7.80254 -6.27573 -3.84152 1.06550 1.09876 3.19985 3.26380 3.29910 3.47525 3.72595 3.94291 4.10945 4.21239 4.22047 4.56933 4.65421 4.79401 4.94081 5.06566 5.09831 5.20970 5.29952 5.44947 5.51714 5.53123 5.65329 5.77965 5.83576 5.90825 5.96489 6.01332 6.05814 6.19155 6.26374 6.30551 6.35861 6.44356 6.45151 6.70873 6.75656 6.82434 6.84580 7.07485 7.58822 8.10651 8.47853 8.83777 9.18527 9.40718 9.97344 10.72808 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003493 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.991825 B = 8014.617201 C = 8563.106161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.104 4.104 3 C 0.229 3.771 4 N -0.442 5.442 5 C -0.312 4.312 6 H 0.101 0.899 7 C 0.030 3.970 8 N -0.869 5.869 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.459 3.541 14 O -0.584 6.584 15 C -0.104 4.104 16 H 0.080 0.920 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.083 4.083 20 C -0.106 4.106 21 C -0.090 4.090 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.155 4.155 25 C 0.100 3.900 26 F -0.135 7.135 27 H 0.198 0.802 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 9.510 15.124 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.106 4.106 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.439 4.439 6 H 0.119 0.881 7 C -0.174 4.174 8 N -0.508 5.508 9 Si 0.750 3.250 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.247 3.753 14 O -0.468 6.468 15 C -0.126 4.126 16 H 0.098 0.902 17 C -0.197 4.197 18 C -0.129 4.129 19 C -0.121 4.121 20 C -0.107 4.107 21 C -0.108 4.108 22 C -0.149 4.149 23 C -0.120 4.120 24 C -0.174 4.174 25 C 0.081 3.919 26 F -0.114 7.114 27 H 0.215 0.785 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.149 9.686 14.657 17.848 hybrid contribution 0.080 -0.802 -0.901 1.208 sum 3.229 8.885 13.756 16.691 Atomic orbital electron populations 1.24228 0.95328 1.03638 1.05404 1.23168 0.94306 0.97270 0.95843 1.18314 0.84288 0.95045 0.91750 1.43700 1.55976 1.04876 1.11449 1.19629 1.28418 1.06040 0.89852 0.88116 1.25297 0.95238 0.97693 0.99124 1.70025 1.21575 1.18052 1.41130 0.86041 0.79308 0.78108 0.81512 1.19924 1.21043 1.19932 1.20050 0.83424 0.82582 0.89222 1.90506 1.52354 1.46234 1.57682 1.21197 0.96527 0.99038 0.95825 0.90222 1.21759 0.95094 1.01868 1.00982 1.21344 0.99308 0.99512 0.92767 1.20710 0.97751 0.96600 0.97001 1.20085 0.93506 0.96460 1.00607 1.21006 1.00320 0.91410 0.98082 1.21191 0.93762 0.99664 1.00254 1.20961 0.96144 0.95400 0.99466 1.21145 1.00043 0.93214 1.02954 1.17618 0.93037 0.79446 1.01826 1.91508 1.90223 1.36285 1.93352 0.78490 0.87016 0.91998 0.92155 0.91711 0.92616 0.92481 0.90888 0.91882 0.90657 0.90111 0.85006 0.85520 0.85338 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.49 18.55 29.55 0.55 -4.94 16 2 C -0.10 -2.32 10.21 -37.13 -0.38 -2.70 16 3 C 0.23 5.13 4.89 -6.83 -0.03 5.09 16 4 N -0.44 -11.29 2.60 -117.94 -0.31 -11.60 16 5 C -0.31 -8.70 9.31 -14.94 -0.14 -8.84 16 6 H 0.10 2.95 7.41 -52.48 -0.39 2.57 16 7 C 0.03 0.79 4.97 -17.47 -0.09 0.70 16 8 N -0.87 -22.96 9.31 55.50 0.52 -22.44 16 9 Si 0.92 20.81 29.59 -169.99 -5.03 15.78 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.46 11.24 6.52 -10.99 -0.07 11.17 16 14 O -0.58 -16.39 16.11 5.54 0.09 -16.30 16 15 C -0.10 -1.94 2.18 -91.77 -0.20 -2.14 16 16 H 0.08 1.37 5.72 -51.93 -0.30 1.08 16 17 C -0.14 -2.35 8.99 37.16 0.33 -2.01 16 18 C -0.09 -1.52 4.27 -26.73 -0.11 -1.64 16 19 C -0.08 -1.08 4.83 -27.88 -0.13 -1.22 16 20 C -0.11 -1.32 5.14 -104.56 -0.54 -1.86 16 21 C -0.09 -0.95 9.67 -39.59 -0.38 -1.33 16 22 C -0.13 -1.19 10.04 -39.58 -0.40 -1.58 16 23 C -0.10 -0.92 10.04 -39.59 -0.40 -1.32 16 24 C -0.15 -1.65 10.03 -39.51 -0.40 -2.05 16 25 C 0.10 1.30 7.24 -39.42 -0.29 1.01 16 26 F -0.14 -1.96 16.66 2.25 0.04 -1.92 16 27 H 0.20 3.31 7.80 -54.08 -0.42 2.89 16 28 H 0.11 2.64 6.38 -51.93 -0.33 2.31 16 29 H 0.06 1.17 5.95 -51.93 -0.31 0.86 16 30 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.06 1.18 6.00 -51.93 -0.31 0.87 16 32 H 0.05 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.96 7.95 -51.93 -0.41 0.54 16 37 H 0.08 0.91 6.37 -51.93 -0.33 0.58 16 38 H 0.13 1.15 8.04 -52.49 -0.42 0.73 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -31.95 347.31 -7.36 -39.30 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.22 Total: 5.60 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.67 Total: -13.65 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.21 Total: -34.05 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.95 -7.36 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281556136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.366 kcal (2) G-P(sol) polarization free energy of solvation -31.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds