Wall clock time and date at job start Tue Mar 31 2020 08:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47306 * 139.30040 * 3 2 1 5 5 C 1.37094 * 120.00237 * 263.42642 * 4 3 2 6 6 H 1.08008 * 119.99869 * 199.30774 * 5 4 3 7 7 C 1.38944 * 120.00248 * 19.30385 * 5 4 3 8 8 N 1.31419 * 119.99666 * 16.85741 * 7 5 4 9 9 Si 1.86800 * 120.00362 * 196.85122 * 7 5 4 10 10 H 1.48496 * 109.46866 * 60.00380 * 9 7 5 11 11 H 1.48501 * 109.47055 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47390 * 300.00497 * 9 7 5 13 13 C 1.34781 * 119.99586 * 83.42007 * 4 3 2 14 14 O 1.21296 * 119.99794 * 183.47541 * 13 4 3 15 15 C 1.50696 * 120.00082 * 3.47843 * 13 4 3 16 16 H 1.08999 * 109.47316 * 22.48688 * 15 13 4 17 17 C 1.53005 * 109.47127 * 262.48328 * 15 13 4 18 18 C 1.53005 * 109.46834 * 142.48840 * 15 13 4 19 19 C 1.53002 * 109.47014 * 185.00016 * 18 15 13 20 20 C 1.50699 * 109.47461 * 179.97438 * 19 18 15 21 21 C 1.38220 * 120.01053 * 99.99463 * 20 19 18 22 22 C 1.38222 * 120.02703 * 180.02562 * 21 20 19 23 23 C 1.38267 * 120.05005 * 359.97438 * 22 21 20 24 24 C 1.38179 * 120.02247 * 0.02562 * 23 22 21 25 25 C 1.38432 * 120.01229 * 280.00336 * 20 19 18 26 26 F 1.35094 * 120.03049 * 359.97438 * 25 20 19 27 27 H 4.40637 * 5.51410 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.47361 * 19.30422 * 3 2 1 29 29 H 1.08999 * 109.47169 * 259.30097 * 3 2 1 30 30 H 0.97003 * 119.99681 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.46731 * 62.65050 * 17 15 13 32 32 H 1.08995 * 109.46794 * 182.65038 * 17 15 13 33 33 H 1.09000 * 109.46863 * 302.65313 * 17 15 13 34 34 H 1.08999 * 109.47564 * 64.99970 * 18 15 13 35 35 H 1.09003 * 109.46871 * 304.99117 * 18 15 13 36 36 H 1.09005 * 109.47392 * 59.99542 * 19 18 15 37 37 H 1.09001 * 109.46844 * 300.00195 * 19 18 15 38 38 H 1.08002 * 119.98895 * 0.02562 * 21 20 19 39 39 H 1.08002 * 119.97709 * 180.02562 * 22 21 20 40 40 H 1.07994 * 119.98916 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.00878 * 179.74495 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.0480 -0.9007 5 6 3.4907 0.7347 -2.1867 6 1 4.1278 1.4021 -2.7482 7 6 3.0329 -0.4414 -2.7679 8 7 2.0155 -1.0832 -2.2384 9 14 3.8631 -1.1103 -4.3017 10 1 5.2926 -1.3872 -4.0099 11 1 3.1907 -2.3662 -4.7209 12 1 3.7659 -0.1089 -5.3939 13 6 3.2318 2.3197 -0.4649 14 8 3.5755 3.1975 -1.2281 15 6 2.9145 2.6508 0.9706 16 1 3.0185 1.7543 1.5818 17 6 1.4790 3.1713 1.0686 18 6 3.8818 3.7250 1.4720 19 6 3.6416 3.9718 2.9628 20 6 4.5947 5.0294 3.4568 21 6 4.1621 6.3334 3.6088 22 6 5.0361 7.3038 4.0615 23 6 6.3439 6.9713 4.3632 24 6 6.7786 5.6684 4.2121 25 6 5.9038 4.6954 3.7585 26 9 6.3277 3.4212 3.6106 27 1 -1.0501 -0.0001 0.0003 28 1 3.0098 -0.9690 -0.3397 29 1 3.0092 0.1916 1.0098 30 1 1.6957 -1.9041 -2.6444 31 1 0.7870 2.3895 0.7558 32 1 1.2650 3.4550 2.0990 33 1 1.3626 4.0401 0.4207 34 1 3.7161 4.6498 0.9193 35 1 4.9077 3.3896 1.3200 36 1 3.8073 3.0471 3.5155 37 1 2.6157 4.3071 3.1148 38 1 3.1407 6.5941 3.3738 39 1 4.6971 8.3223 4.1803 40 1 7.0258 7.7302 4.7172 41 1 7.8012 5.4098 4.4439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281556136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:42 Heat of formation + Delta-G solvation = -17.377695 kcal Electronic energy + Delta-G solvation = -24295.930931 eV Core-core repulsion = 20670.334972 eV Total energy + Delta-G solvation = -3625.595960 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.85483 -40.85406 -39.93433 -37.30218 -36.43765 -34.09561 -33.02925 -32.96362 -31.40755 -29.22073 -28.35849 -26.92929 -25.81357 -23.70429 -23.38304 -21.85701 -20.19466 -19.62105 -18.56895 -18.28576 -18.12186 -17.39659 -16.87494 -16.58146 -16.36560 -16.03943 -15.93775 -15.38498 -15.10784 -14.76259 -14.56799 -14.32533 -14.04656 -14.00308 -13.77897 -13.51131 -13.40149 -13.14598 -12.82134 -12.72464 -12.61679 -12.50117 -12.25600 -12.14884 -12.09875 -11.61590 -11.54884 -11.20972 -10.99232 -10.56117 -10.20531 -9.84515 -9.80122 -9.53784 -8.30073 -5.95299 0.24454 0.31580 1.37047 1.40104 1.49909 1.92043 2.14965 2.33821 2.42215 2.68601 3.06444 3.18401 3.38794 3.66566 3.79068 3.87110 3.95949 4.02229 4.09858 4.27231 4.35402 4.42071 4.46468 4.50424 4.59304 4.72067 4.82058 4.91399 4.97811 5.02039 5.02687 5.06980 5.17380 5.29523 5.33986 5.39699 5.44656 5.45915 5.49465 5.54494 6.02342 6.07172 6.46220 7.14999 7.17605 7.43543 8.01188 8.67304 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003493 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.991825 B = 8014.617201 C = 8563.106161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.146 4.146 3 C 0.232 3.768 4 N -0.454 5.454 5 C -0.353 4.353 6 H 0.071 0.929 7 C 0.003 3.997 8 N -0.875 5.875 9 Si 0.985 3.015 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.444 3.556 14 O -0.633 6.633 15 C -0.094 4.094 16 H 0.095 0.905 17 C -0.132 4.132 18 C -0.080 4.080 19 C -0.073 4.073 20 C -0.126 4.126 21 C -0.096 4.096 22 C -0.127 4.127 23 C -0.097 4.097 24 C -0.163 4.163 25 C 0.066 3.934 26 F -0.154 7.154 27 H 0.233 0.767 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.272 0.728 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 10.314 16.835 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.148 4.148 3 C 0.110 3.890 4 N -0.171 5.171 5 C -0.481 4.481 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.512 5.512 9 Si 0.808 3.192 10 H -0.193 1.193 11 H -0.195 1.195 12 H -0.206 1.206 13 C 0.235 3.765 14 O -0.521 6.521 15 C -0.115 4.115 16 H 0.113 0.887 17 C -0.189 4.189 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.114 4.114 22 C -0.145 4.145 23 C -0.115 4.115 24 C -0.182 4.182 25 C 0.047 3.953 26 F -0.133 7.133 27 H 0.250 0.750 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.178 0.822 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.121 10.461 16.401 19.568 hybrid contribution 0.377 -0.993 -1.429 1.780 sum 2.497 9.468 14.972 17.890 Atomic orbital electron populations 1.25079 0.96228 1.01621 1.03462 1.23299 0.94749 0.99109 0.97628 1.18324 0.84993 0.93249 0.92482 1.43931 1.55894 1.06049 1.11240 1.19547 1.29996 1.07013 0.91514 0.91134 1.25971 0.95379 0.97042 1.01652 1.70124 1.21460 1.17853 1.41770 0.85139 0.78720 0.77516 0.77782 1.19278 1.19491 1.20641 1.21141 0.82091 0.81802 0.91458 1.90455 1.54384 1.47545 1.59668 1.21189 0.98244 1.00356 0.91714 0.88720 1.21734 0.93073 1.00704 1.03420 1.21207 0.97275 0.97854 0.95515 1.20590 0.99298 0.97327 0.93736 1.20143 0.93318 0.97295 1.01980 1.21316 1.01607 0.90774 0.97708 1.21617 0.93478 1.00800 0.98588 1.21393 0.96810 0.95208 0.98075 1.21427 1.00455 0.93627 1.02664 1.18043 0.94105 0.79341 1.03794 1.91452 1.90474 1.37583 1.93759 0.75043 0.88878 0.88896 0.91812 0.92984 0.88184 0.93809 0.92444 0.94434 0.90486 0.87813 0.83195 0.82419 0.82176 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.61 18.55 74.32 1.38 -8.23 16 2 C -0.15 -6.43 10.21 31.12 0.32 -6.11 16 3 C 0.23 10.49 4.89 84.57 0.41 10.90 16 4 N -0.45 -24.02 2.60 -645.43 -1.68 -25.70 16 5 C -0.35 -20.57 9.31 84.04 0.78 -19.78 16 6 H 0.07 4.43 7.41 -2.91 -0.02 4.40 16 7 C 0.00 0.14 4.97 84.92 0.42 0.56 16 8 N -0.87 -46.25 9.31 21.66 0.20 -46.04 16 9 Si 0.98 43.21 29.59 68.60 2.03 45.24 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.44 22.67 6.52 87.66 0.57 23.24 16 14 O -0.63 -37.60 16.11 -3.08 -0.05 -37.65 16 15 C -0.09 -3.49 2.18 -11.54 -0.03 -3.52 16 16 H 0.09 3.20 5.72 -2.39 -0.01 3.19 16 17 C -0.13 -4.27 8.99 71.98 0.65 -3.62 16 18 C -0.08 -2.72 4.27 30.60 0.13 -2.59 16 19 C -0.07 -1.80 4.83 29.85 0.14 -1.66 16 20 C -0.13 -3.06 5.14 -19.82 -0.10 -3.16 16 21 C -0.10 -1.81 9.67 22.26 0.22 -1.59 16 22 C -0.13 -1.91 10.04 22.27 0.22 -1.68 16 23 C -0.10 -1.48 10.04 22.26 0.22 -1.26 16 24 C -0.16 -3.30 10.03 22.31 0.22 -3.08 16 25 C 0.07 1.72 7.24 22.37 0.16 1.88 16 26 F -0.15 -4.64 16.66 44.97 0.75 -3.89 16 27 H 0.23 7.00 7.80 -4.41 -0.03 6.97 16 28 H 0.09 4.50 6.38 -2.39 -0.02 4.49 16 29 H 0.09 3.49 5.95 -2.39 -0.01 3.48 16 30 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.05 1.82 6.00 -2.39 -0.01 1.81 16 32 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 2.10 8.02 -2.39 -0.02 2.08 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.88 7.95 -2.38 -0.02 1.86 16 37 H 0.10 2.05 6.37 -2.39 -0.02 2.03 16 38 H 0.15 2.18 8.04 -2.91 -0.02 2.15 16 39 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -73.16 347.31 8.02 -65.15 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 1.04 Total: 22.59 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 5.73 Total: -19.69 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.48 Total: -71.75 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.05 Total: -37.65 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.75 Total: -3.89 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -73.16 8.02 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281556136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.770 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds