Wall clock time and date at job start Tue Mar 31 2020 08:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47071 * 245.58694 * 3 2 1 5 5 C 1.37097 * 120.00093 * 83.26431 * 4 3 2 6 6 H 1.07997 * 119.99902 * 166.32901 * 5 4 3 7 7 C 1.38948 * 119.99530 * 346.33139 * 5 4 3 8 8 N 1.31404 * 120.00667 * 359.66331 * 7 5 4 9 9 Si 1.86802 * 119.99579 * 179.66344 * 7 5 4 10 10 H 1.48500 * 109.47081 * 89.99906 * 9 7 5 11 11 H 1.48504 * 109.47284 * 210.00088 * 9 7 5 12 12 H 1.48499 * 109.47268 * 330.00048 * 9 7 5 13 13 C 1.34778 * 120.00067 * 263.26650 * 4 3 2 14 14 O 1.21289 * 120.00215 * 184.57117 * 13 4 3 15 15 C 1.50706 * 119.99924 * 4.56353 * 13 4 3 16 16 H 1.09005 * 109.46616 * 31.46695 * 15 13 4 17 17 C 1.53001 * 109.47115 * 271.46592 * 15 13 4 18 18 C 1.52995 * 109.47064 * 151.46227 * 15 13 4 19 19 C 1.53001 * 109.47406 * 184.99763 * 18 15 13 20 20 C 1.50699 * 109.47296 * 179.97438 * 19 18 15 21 21 C 1.38264 * 119.99020 * 269.73256 * 20 19 18 22 22 C 1.38224 * 120.05243 * 179.72567 * 21 20 19 23 23 C 1.38220 * 120.02082 * 0.54877 * 22 21 20 24 24 C 1.38436 * 119.98040 * 359.72237 * 23 22 21 25 25 F 1.35101 * 120.03351 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98076 * 90.00488 * 20 19 18 27 27 H 4.40645 * 5.51362 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.46575 * 125.58493 * 3 2 1 29 29 H 1.09002 * 109.46808 * 5.59102 * 3 2 1 30 30 H 0.96997 * 120.00491 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46958 * 294.23392 * 17 15 13 32 32 H 1.09001 * 109.47214 * 54.24092 * 17 15 13 33 33 H 1.08996 * 109.46669 * 174.23937 * 17 15 13 34 34 H 1.09011 * 109.47207 * 65.00094 * 18 15 13 35 35 H 1.08994 * 109.47626 * 305.00481 * 18 15 13 36 36 H 1.08994 * 109.47315 * 300.00909 * 19 18 15 37 37 H 1.09007 * 109.46374 * 60.00420 * 19 18 15 38 38 H 1.07997 * 119.97209 * 359.97438 * 21 20 19 39 39 H 1.07995 * 119.98986 * 180.27180 * 22 21 20 40 40 H 1.08004 * 120.01465 * 179.74742 * 23 22 21 41 41 H 1.07997 * 120.02087 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5717 1.2577 5 6 3.2317 -0.2156 2.3758 6 1 3.7894 0.1310 3.2332 7 6 2.6131 -1.4594 2.4057 8 7 1.9290 -1.8783 1.3649 9 14 2.7538 -2.5362 3.9256 10 1 1.6337 -2.2332 4.8524 11 1 2.6938 -3.9654 3.5271 12 1 4.0459 -2.2658 4.6059 13 6 3.4872 1.8711 1.3156 14 8 3.9689 2.3240 2.3325 15 6 3.2837 2.7615 0.1168 16 1 2.4102 2.4246 -0.4417 17 6 4.5200 2.6969 -0.7822 18 6 3.0665 4.2024 0.5827 19 6 2.7365 5.0842 -0.6233 20 6 2.5219 6.5035 -0.1642 21 6 1.2566 6.9299 0.1948 22 6 1.0594 8.2298 0.6215 23 6 2.1251 9.1080 0.6788 24 6 3.3915 8.6839 0.3143 25 9 4.4340 9.5413 0.3704 26 6 3.5889 7.3796 -0.1077 27 1 -1.0501 0.0001 -0.0003 28 1 3.0091 0.5989 -0.8358 29 1 3.0098 -1.0220 -0.1001 30 1 1.4975 -2.7467 1.3856 31 1 5.3729 3.1288 -0.2586 32 1 4.7345 1.6576 -1.0310 33 1 4.3333 3.2585 -1.6975 34 1 3.9732 4.5694 1.0638 35 1 2.2403 4.2341 1.2929 36 1 3.5627 5.0526 -1.3335 37 1 1.8297 4.7173 -1.1042 38 1 0.4225 6.2457 0.1457 39 1 0.0714 8.5605 0.9058 40 1 1.9701 10.1248 1.0083 41 1 4.5764 7.0475 -0.3919 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281637402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:48 Heat of formation + Delta-G solvation = 0.605957 kcal Electronic energy + Delta-G solvation = -23953.674730 eV Core-core repulsion = 20328.858600 eV Total energy + Delta-G solvation = -3624.816130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.97456 -39.46339 -38.83862 -35.67778 -34.82219 -32.35077 -31.59795 -31.19969 -30.62424 -28.23423 -26.43032 -25.33673 -24.38494 -22.84575 -22.10285 -20.74206 -18.47106 -17.87697 -17.39182 -16.56928 -16.47433 -16.26265 -16.19514 -15.66846 -14.75969 -14.71933 -14.24030 -14.07031 -13.86974 -13.52117 -13.34971 -12.99043 -12.81479 -12.50169 -12.42107 -12.22293 -11.86475 -11.75618 -11.37899 -11.27159 -11.17297 -11.06022 -11.01336 -10.50188 -10.47296 -10.30800 -10.23895 -9.50065 -9.19238 -9.03968 -8.74196 -8.68737 -8.31676 -7.90103 -6.23813 -3.87234 1.06542 1.10891 3.15394 3.24373 3.29145 3.47644 3.73877 3.92973 4.12586 4.15277 4.25142 4.56590 4.67109 4.85766 4.94843 5.08996 5.10630 5.21642 5.29905 5.35953 5.47279 5.59784 5.65774 5.69259 5.75379 5.88709 5.98599 6.00017 6.05267 6.16714 6.20435 6.21974 6.26928 6.38379 6.49770 6.67186 6.68865 6.81477 6.99852 7.17029 7.54722 8.03682 8.44796 8.94073 9.14597 9.37797 9.91086 10.68653 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.003119 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.106941 B = 8975.410891 C = 9210.396418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.087 4.087 3 C 0.231 3.769 4 N -0.446 5.446 5 C -0.303 4.303 6 H 0.104 0.896 7 C 0.027 3.973 8 N -0.879 5.879 9 Si 0.931 3.069 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.456 3.544 14 O -0.586 6.586 15 C -0.105 4.105 16 H 0.082 0.918 17 C -0.141 4.141 18 C -0.088 4.088 19 C -0.086 4.086 20 C -0.042 4.042 21 C -0.128 4.128 22 C -0.089 4.089 23 C -0.165 4.165 24 C 0.097 3.903 25 F -0.143 7.143 26 C -0.152 4.152 27 H 0.195 0.805 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.267 0.733 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 13.729 -7.885 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.090 4.090 3 C 0.108 3.892 4 N -0.164 5.164 5 C -0.431 4.431 6 H 0.122 0.878 7 C -0.175 4.175 8 N -0.519 5.519 9 Si 0.758 3.242 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.244 3.756 14 O -0.470 6.470 15 C -0.127 4.127 16 H 0.100 0.900 17 C -0.198 4.198 18 C -0.126 4.126 19 C -0.123 4.123 20 C -0.042 4.042 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.184 4.184 24 C 0.078 3.922 25 F -0.122 7.122 26 C -0.170 4.170 27 H 0.212 0.788 28 H 0.075 0.925 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.252 13.759 -7.393 15.670 hybrid contribution -0.297 -0.603 0.774 1.025 sum -1.549 13.156 -6.619 14.809 Atomic orbital electron populations 1.24166 0.95308 1.07132 1.04135 1.23091 0.94227 0.94875 0.96767 1.18602 0.84377 1.01065 0.85154 1.43748 1.55710 1.07392 1.09545 1.19769 1.31032 0.97755 0.94506 0.87830 1.25294 0.95620 0.98020 0.98555 1.69891 1.33099 1.20430 1.28520 0.85849 0.78844 0.78533 0.81014 1.20490 1.20923 1.19506 1.20006 0.84192 0.82184 0.89188 1.90512 1.48892 1.74032 1.33563 1.21199 0.99582 0.95441 0.96498 0.89964 1.21793 0.97308 1.02118 0.98614 1.21311 1.02848 0.92404 0.96068 1.20798 1.02899 0.89897 0.98700 1.19852 0.92430 0.95766 0.96158 1.21198 0.97176 0.96140 1.00068 1.20997 0.98546 0.93246 0.97966 1.21094 0.91627 1.01306 1.04348 1.17715 0.84268 0.88131 1.02094 1.91488 1.56788 1.69648 1.94248 1.21074 1.00578 0.91926 1.03454 0.78793 0.92488 0.86051 0.92115 0.92225 0.92263 0.92361 0.90932 0.91656 0.90386 0.90480 0.85192 0.85130 0.85096 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.04 19.24 29.55 0.57 -5.47 16 2 C -0.09 -1.96 10.71 -37.12 -0.40 -2.36 16 3 C 0.23 5.06 4.86 -6.83 -0.03 5.03 16 4 N -0.45 -11.07 2.60 -117.93 -0.31 -11.38 16 5 C -0.30 -8.28 9.47 -14.93 -0.14 -8.42 16 6 H 0.10 2.99 7.23 -52.49 -0.38 2.61 16 7 C 0.03 0.69 5.36 -17.47 -0.09 0.59 16 8 N -0.88 -22.53 7.99 55.50 0.44 -22.09 16 9 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 13 C 0.46 10.72 6.69 -10.98 -0.07 10.64 16 14 O -0.59 -15.85 15.87 5.55 0.09 -15.76 16 15 C -0.11 -1.83 1.86 -91.77 -0.17 -2.01 16 16 H 0.08 1.38 6.57 -51.93 -0.34 1.04 16 17 C -0.14 -2.04 8.50 37.16 0.32 -1.73 16 18 C -0.09 -1.39 4.15 -26.73 -0.11 -1.50 16 19 C -0.09 -1.01 5.10 -27.88 -0.14 -1.15 16 20 C -0.04 -0.49 5.13 -104.64 -0.54 -1.03 16 21 C -0.13 -1.39 9.70 -39.58 -0.38 -1.77 16 22 C -0.09 -0.88 10.04 -39.59 -0.40 -1.27 16 23 C -0.16 -1.72 10.03 -39.51 -0.40 -2.11 16 24 C 0.10 1.16 7.30 -39.41 -0.29 0.87 16 25 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 26 C -0.15 -1.80 9.68 -39.51 -0.38 -2.19 16 27 H 0.19 3.36 7.80 -54.09 -0.42 2.94 16 28 H 0.06 1.04 5.17 -51.93 -0.27 0.78 16 29 H 0.12 2.85 6.35 -51.93 -0.33 2.52 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.87 7.14 -51.93 -0.37 0.50 16 33 H 0.06 0.66 6.85 -51.93 -0.36 0.31 16 34 H 0.07 1.23 8.02 -51.92 -0.42 0.81 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 0.82 6.64 -51.93 -0.34 0.47 16 37 H 0.08 0.84 8.08 -51.92 -0.42 0.42 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -30.77 349.11 -7.48 -38.25 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.32 Total: 5.61 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -2.66 Total: -13.88 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.14 Total: -33.47 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.09 Total: -15.76 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.77 -7.48 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281637402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.856 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds