Wall clock time and date at job start Tue Mar 31 2020 08:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47071 * 245.58694 * 3 2 1 5 5 C 1.37097 * 120.00093 * 83.26431 * 4 3 2 6 6 H 1.07997 * 119.99902 * 166.32901 * 5 4 3 7 7 C 1.38948 * 119.99530 * 346.33139 * 5 4 3 8 8 N 1.31404 * 120.00667 * 359.66331 * 7 5 4 9 9 Si 1.86802 * 119.99579 * 179.66344 * 7 5 4 10 10 H 1.48500 * 109.47081 * 89.99906 * 9 7 5 11 11 H 1.48504 * 109.47284 * 210.00088 * 9 7 5 12 12 H 1.48499 * 109.47268 * 330.00048 * 9 7 5 13 13 C 1.34778 * 120.00067 * 263.26650 * 4 3 2 14 14 O 1.21289 * 120.00215 * 184.57117 * 13 4 3 15 15 C 1.50706 * 119.99924 * 4.56353 * 13 4 3 16 16 H 1.09005 * 109.46616 * 31.46695 * 15 13 4 17 17 C 1.53001 * 109.47115 * 271.46592 * 15 13 4 18 18 C 1.52995 * 109.47064 * 151.46227 * 15 13 4 19 19 C 1.53001 * 109.47406 * 184.99763 * 18 15 13 20 20 C 1.50699 * 109.47296 * 179.97438 * 19 18 15 21 21 C 1.38264 * 119.99020 * 269.73256 * 20 19 18 22 22 C 1.38224 * 120.05243 * 179.72567 * 21 20 19 23 23 C 1.38220 * 120.02082 * 0.54877 * 22 21 20 24 24 C 1.38436 * 119.98040 * 359.72237 * 23 22 21 25 25 F 1.35101 * 120.03351 * 180.02562 * 24 23 22 26 26 C 1.38175 * 119.98076 * 90.00488 * 20 19 18 27 27 H 4.40645 * 5.51362 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.46575 * 125.58493 * 3 2 1 29 29 H 1.09002 * 109.46808 * 5.59102 * 3 2 1 30 30 H 0.96997 * 120.00491 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.46958 * 294.23392 * 17 15 13 32 32 H 1.09001 * 109.47214 * 54.24092 * 17 15 13 33 33 H 1.08996 * 109.46669 * 174.23937 * 17 15 13 34 34 H 1.09011 * 109.47207 * 65.00094 * 18 15 13 35 35 H 1.08994 * 109.47626 * 305.00481 * 18 15 13 36 36 H 1.08994 * 109.47315 * 300.00909 * 19 18 15 37 37 H 1.09007 * 109.46374 * 60.00420 * 19 18 15 38 38 H 1.07997 * 119.97209 * 359.97438 * 21 20 19 39 39 H 1.07995 * 119.98986 * 180.27180 * 22 21 20 40 40 H 1.08004 * 120.01465 * 179.74742 * 23 22 21 41 41 H 1.07997 * 120.02087 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.5717 1.2577 5 6 3.2317 -0.2156 2.3758 6 1 3.7894 0.1310 3.2332 7 6 2.6131 -1.4594 2.4057 8 7 1.9290 -1.8783 1.3649 9 14 2.7538 -2.5362 3.9256 10 1 1.6337 -2.2332 4.8524 11 1 2.6938 -3.9654 3.5271 12 1 4.0459 -2.2658 4.6059 13 6 3.4872 1.8711 1.3156 14 8 3.9689 2.3240 2.3325 15 6 3.2837 2.7615 0.1168 16 1 2.4102 2.4246 -0.4417 17 6 4.5200 2.6969 -0.7822 18 6 3.0665 4.2024 0.5827 19 6 2.7365 5.0842 -0.6233 20 6 2.5219 6.5035 -0.1642 21 6 1.2566 6.9299 0.1948 22 6 1.0594 8.2298 0.6215 23 6 2.1251 9.1080 0.6788 24 6 3.3915 8.6839 0.3143 25 9 4.4340 9.5413 0.3704 26 6 3.5889 7.3796 -0.1077 27 1 -1.0501 0.0001 -0.0003 28 1 3.0091 0.5989 -0.8358 29 1 3.0098 -1.0220 -0.1001 30 1 1.4975 -2.7467 1.3856 31 1 5.3729 3.1288 -0.2586 32 1 4.7345 1.6576 -1.0310 33 1 4.3333 3.2585 -1.6975 34 1 3.9732 4.5694 1.0638 35 1 2.2403 4.2341 1.2929 36 1 3.5627 5.0526 -1.3335 37 1 1.8297 4.7173 -1.1042 38 1 0.4225 6.2457 0.1457 39 1 0.0714 8.5605 0.9058 40 1 1.9701 10.1248 1.0083 41 1 4.5764 7.0475 -0.3919 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281637402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:48 Heat of formation + Delta-G solvation = -14.208071 kcal Electronic energy + Delta-G solvation = -23954.317114 eV Core-core repulsion = 20328.858600 eV Total energy + Delta-G solvation = -3625.458514 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88974 -40.87161 -40.04712 -37.33274 -36.34423 -33.90821 -33.09771 -32.88210 -31.46370 -29.32233 -28.20481 -26.91872 -25.78955 -23.71796 -23.35674 -21.86014 -20.08489 -19.69696 -18.52015 -18.21308 -17.87289 -17.35122 -17.07160 -16.58948 -16.50141 -16.10440 -15.94528 -15.53265 -14.97444 -14.72266 -14.50051 -14.37726 -14.15363 -13.99912 -13.67272 -13.48766 -13.14365 -13.07963 -12.89492 -12.69347 -12.49310 -12.42188 -12.26695 -12.16009 -12.10993 -11.60810 -11.50634 -11.38370 -10.92999 -10.47483 -10.19777 -9.86727 -9.83585 -9.59143 -8.20107 -5.91934 0.21104 0.28387 1.35352 1.39915 1.51010 1.95614 2.16143 2.35494 2.52172 2.63659 3.11009 3.21735 3.29843 3.70622 3.84524 3.92538 4.04277 4.06528 4.15215 4.22112 4.32460 4.41445 4.48239 4.57617 4.64772 4.75744 4.79890 4.96858 5.01698 5.04835 5.06914 5.15719 5.19643 5.22726 5.36760 5.42860 5.45299 5.45473 5.53685 5.64472 5.98672 6.07133 6.49225 7.17144 7.25771 7.47834 8.02063 8.68019 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.003119 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.106941 B = 8975.410891 C = 9210.396418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.128 4.128 3 C 0.235 3.765 4 N -0.458 5.458 5 C -0.343 4.343 6 H 0.073 0.927 7 C 0.000 4.000 8 N -0.879 5.879 9 Si 0.986 3.014 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.275 1.275 13 C 0.443 3.557 14 O -0.634 6.634 15 C -0.095 4.095 16 H 0.094 0.906 17 C -0.137 4.137 18 C -0.080 4.080 19 C -0.073 4.073 20 C -0.057 4.057 21 C -0.135 4.135 22 C -0.088 4.088 23 C -0.165 4.165 24 C 0.075 3.925 25 F -0.151 7.151 26 C -0.162 4.162 27 H 0.228 0.772 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.270 0.730 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 14.126 -9.395 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.130 4.130 3 C 0.113 3.887 4 N -0.176 5.176 5 C -0.471 4.471 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.518 5.518 9 Si 0.811 3.189 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.200 1.200 13 C 0.234 3.766 14 O -0.521 6.521 15 C -0.116 4.116 16 H 0.112 0.888 17 C -0.194 4.194 18 C -0.118 4.118 19 C -0.110 4.110 20 C -0.057 4.057 21 C -0.153 4.153 22 C -0.106 4.106 23 C -0.183 4.183 24 C 0.056 3.944 25 F -0.130 7.130 26 C -0.181 4.181 27 H 0.244 0.756 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.843 14.144 -8.947 16.976 hybrid contribution 0.141 -0.712 1.270 1.463 sum -2.703 13.432 -7.677 15.706 Atomic orbital electron populations 1.25012 0.96276 1.05431 1.02454 1.23391 0.94900 0.96402 0.98277 1.18584 0.84643 1.00547 0.84948 1.43959 1.55856 1.07915 1.09859 1.19646 1.32841 0.99395 0.95194 0.90912 1.25907 0.94916 0.98312 1.01001 1.70039 1.32269 1.20458 1.29052 0.85034 0.78287 0.77593 0.78010 1.20614 1.19272 1.20014 1.21157 0.82580 0.82345 0.90519 1.90468 1.50765 1.74941 1.35968 1.21193 1.01431 0.94777 0.94210 0.88763 1.21811 0.95432 1.02682 0.99504 1.21204 1.01074 0.92164 0.97383 1.20693 1.04327 0.89043 0.96974 1.19906 0.92910 0.95713 0.97139 1.21487 0.97244 0.96967 0.99563 1.21347 0.99675 0.92660 0.96932 1.21404 0.91085 1.02454 1.03393 1.17980 0.84817 0.88314 1.03278 1.91463 1.57257 1.69843 1.94438 1.21217 1.01005 0.92177 1.03695 0.75556 0.88893 0.88032 0.91917 0.93045 0.92553 0.88093 0.92861 0.93935 0.88579 0.88875 0.83935 0.82271 0.83144 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.83 19.24 74.32 1.43 -9.40 16 2 C -0.13 -5.59 10.71 31.12 0.33 -5.25 16 3 C 0.23 10.24 4.86 84.57 0.41 10.65 16 4 N -0.46 -23.29 2.60 -645.42 -1.68 -24.97 16 5 C -0.34 -19.43 9.47 84.04 0.80 -18.63 16 6 H 0.07 4.46 7.23 -2.91 -0.02 4.44 16 7 C 0.00 -0.01 5.36 84.93 0.45 0.45 16 8 N -0.88 -44.77 7.99 21.66 0.17 -44.60 16 9 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 12 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.44 21.42 6.69 87.66 0.59 22.01 16 14 O -0.63 -36.04 15.87 -3.06 -0.05 -36.09 16 15 C -0.09 -3.22 1.86 -11.54 -0.02 -3.24 16 16 H 0.09 2.99 6.57 -2.38 -0.02 2.97 16 17 C -0.14 -3.72 8.50 71.98 0.61 -3.11 16 18 C -0.08 -2.49 4.15 30.59 0.13 -2.36 16 19 C -0.07 -1.57 5.10 29.85 0.15 -1.42 16 20 C -0.06 -1.25 5.13 -19.87 -0.10 -1.35 16 21 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 22 C -0.09 -1.52 10.04 22.26 0.22 -1.30 16 23 C -0.16 -3.14 10.03 22.31 0.22 -2.92 16 24 C 0.08 1.74 7.30 22.38 0.16 1.90 16 25 F -0.15 -3.75 17.27 44.97 0.78 -2.97 16 26 C -0.16 -3.74 9.68 22.32 0.22 -3.52 16 27 H 0.23 7.06 7.80 -4.41 -0.03 7.02 16 28 H 0.09 3.28 5.17 -2.39 -0.01 3.26 16 29 H 0.10 4.80 6.35 -2.39 -0.02 4.79 16 30 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.57 7.14 -2.39 -0.02 1.55 16 33 H 0.10 1.91 6.85 -2.39 -0.02 1.89 16 34 H 0.05 1.84 8.02 -2.38 -0.02 1.82 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 1.71 6.64 -2.39 -0.02 1.69 16 37 H 0.09 1.72 8.08 -2.38 -0.02 1.70 16 38 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -69.25 349.11 8.10 -61.15 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.03 Total: 22.54 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.82 Total: -19.95 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -1.51 Total: -69.57 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.05 Total: -36.09 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.25 8.10 -61.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281637402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -69.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds