Wall clock time and date at job start Tue Mar 31 2020 08:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47260 * 8.75442 * 3 2 1 5 5 C 1.37102 * 120.00004 * 95.78999 * 4 3 2 6 6 H 1.08000 * 120.00343 * 315.97468 * 5 4 3 7 7 C 1.38950 * 119.99796 * 135.70145 * 5 4 3 8 8 N 1.31404 * 120.00110 * 161.96898 * 7 5 4 9 9 Si 1.86805 * 119.99895 * 341.97047 * 7 5 4 10 10 H 1.48497 * 109.47197 * 94.79854 * 9 7 5 11 11 H 1.48500 * 109.46944 * 214.80148 * 9 7 5 12 12 H 1.48499 * 109.46795 * 334.79646 * 9 7 5 13 13 C 1.34780 * 120.00146 * 275.79720 * 4 3 2 14 14 O 1.21286 * 120.00113 * 176.16964 * 13 4 3 15 15 C 1.50706 * 119.99620 * 356.16804 * 13 4 3 16 16 H 1.09000 * 109.46725 * 333.63937 * 15 13 4 17 17 C 1.52994 * 109.46943 * 93.64115 * 15 13 4 18 18 C 1.52996 * 109.46900 * 213.64257 * 15 13 4 19 19 C 1.52999 * 109.47392 * 174.99738 * 18 15 13 20 20 C 1.50701 * 109.47137 * 179.97438 * 19 18 15 21 21 C 1.38266 * 119.98814 * 269.72616 * 20 19 18 22 22 C 1.38225 * 120.04716 * 179.72968 * 21 20 19 23 23 C 1.38214 * 120.02828 * 0.54786 * 22 21 20 24 24 C 1.38439 * 119.97052 * 359.72730 * 23 22 21 25 25 F 1.35110 * 120.02134 * 180.02562 * 24 23 22 26 26 C 1.38178 * 119.98230 * 90.00469 * 20 19 18 27 27 H 4.40641 * 5.51291 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.47257 * 248.75478 * 3 2 1 29 29 H 1.09007 * 109.46871 * 128.75130 * 3 2 1 30 30 H 0.97006 * 119.99894 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.47221 * 65.91700 * 17 15 13 32 32 H 1.09001 * 109.46588 * 185.91312 * 17 15 13 33 33 H 1.08993 * 109.47309 * 305.90946 * 17 15 13 34 34 H 1.08999 * 109.46972 * 295.00382 * 18 15 13 35 35 H 1.09008 * 109.47177 * 54.99521 * 18 15 13 36 36 H 1.08994 * 109.47128 * 300.00285 * 19 18 15 37 37 H 1.09006 * 109.46629 * 59.99826 * 19 18 15 38 38 H 1.08001 * 119.97101 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.98545 * 180.27459 * 22 21 20 40 40 H 1.07997 * 120.01416 * 179.75113 * 23 22 21 41 41 H 1.07994 * 120.01281 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3642 -0.2102 5 6 3.4766 -1.7836 -1.4700 6 1 2.8391 -1.5474 -2.3092 7 6 4.6459 -2.5076 -1.6679 8 7 4.8075 -3.2067 -2.7688 9 14 5.9883 -2.4871 -0.3690 10 1 5.8281 -3.6604 0.5269 11 1 7.3171 -2.5463 -1.0295 12 1 5.8869 -1.2382 0.4279 13 6 3.2489 -2.2077 0.8348 14 8 3.5871 -3.3580 0.6517 15 6 2.9559 -1.7216 2.2309 16 1 3.1294 -0.6468 2.2852 17 6 1.4966 -2.0209 2.5794 18 6 3.8745 -2.4372 3.2233 19 6 3.6652 -1.8555 4.6228 20 6 4.5696 -2.5609 5.6004 21 6 4.1251 -3.6910 6.2615 22 6 4.9556 -4.3422 7.1542 23 6 6.2273 -3.8576 7.3955 24 6 6.6713 -2.7229 6.7385 25 9 7.9145 -2.2486 6.9732 26 6 5.8406 -2.0745 5.8400 27 1 -1.0498 -0.0004 0.0001 28 1 3.0092 0.3732 0.9578 29 1 3.0090 0.6441 -0.8015 30 1 5.6240 -3.7119 -2.9071 31 1 1.3486 -3.0997 2.6280 32 1 1.2555 -1.5772 3.5454 33 1 0.8462 -1.5990 1.8134 34 1 3.6396 -3.5015 3.2333 35 1 4.9131 -2.2972 2.9232 36 1 3.9001 -0.7912 4.6128 37 1 2.6267 -1.9955 4.9229 38 1 3.1298 -4.0675 6.0771 39 1 4.6090 -5.2274 7.6667 40 1 6.8745 -4.3643 8.0961 41 1 6.1860 -1.1894 5.3266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281637405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:51 Heat of formation + Delta-G solvation = 1.620445 kcal Electronic energy + Delta-G solvation = -24339.904004 eV Core-core repulsion = 20715.131866 eV Total energy + Delta-G solvation = -3624.772138 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.99750 -39.61222 -39.06021 -35.57933 -34.95380 -32.81971 -32.01665 -31.50743 -30.65830 -28.29631 -26.84441 -25.42329 -24.31918 -22.85669 -22.04319 -20.81262 -19.06851 -18.00420 -17.53734 -16.95342 -16.48656 -16.29453 -15.91765 -15.70419 -15.29834 -14.82695 -14.39492 -14.17030 -13.82266 -13.53622 -13.37846 -13.19105 -12.84897 -12.72271 -12.65195 -12.43921 -12.03218 -11.93494 -11.85891 -11.48216 -11.37483 -11.10645 -10.95660 -10.62535 -10.55395 -10.25504 -9.97456 -9.88484 -9.61689 -9.08504 -8.78755 -8.63256 -8.44501 -7.70997 -6.22490 -4.00719 1.02362 1.06598 3.12894 3.24903 3.29426 3.39622 3.43613 3.58950 3.80400 4.09191 4.43786 4.49659 4.56715 4.64187 4.85170 4.88013 5.05468 5.07697 5.18001 5.22050 5.27694 5.34398 5.47159 5.60907 5.66403 5.74593 5.81070 5.92587 5.95674 6.00727 6.10404 6.13279 6.15145 6.17625 6.21570 6.36004 6.42034 6.56857 6.59147 6.76813 7.82701 7.96313 8.02851 8.74414 8.90498 9.39152 9.78232 10.84309 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.004362 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.749336 B = 6417.552203 C = 7515.277657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C 0.200 3.800 4 N -0.464 5.464 5 C -0.349 4.349 6 H 0.093 0.907 7 C 0.095 3.905 8 N -0.865 5.865 9 Si 0.898 3.102 10 H -0.255 1.255 11 H -0.303 1.303 12 H -0.276 1.276 13 C 0.462 3.538 14 O -0.539 6.539 15 C -0.111 4.111 16 H 0.081 0.919 17 C -0.140 4.140 18 C -0.097 4.097 19 C -0.084 4.084 20 C -0.044 4.044 21 C -0.127 4.127 22 C -0.089 4.089 23 C -0.164 4.164 24 C 0.098 3.902 25 F -0.142 7.142 26 C -0.153 4.153 27 H 0.211 0.789 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.272 0.728 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 4.452 19.245 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.174 4.174 3 C 0.077 3.923 4 N -0.186 5.186 5 C -0.475 4.475 6 H 0.110 0.890 7 C -0.114 4.114 8 N -0.500 5.500 9 Si 0.727 3.273 10 H -0.181 1.181 11 H -0.231 1.231 12 H -0.201 1.201 13 C 0.252 3.748 14 O -0.419 6.419 15 C -0.133 4.133 16 H 0.099 0.901 17 C -0.197 4.197 18 C -0.135 4.135 19 C -0.121 4.121 20 C -0.044 4.044 21 C -0.145 4.145 22 C -0.107 4.107 23 C -0.183 4.183 24 C 0.079 3.921 25 F -0.121 7.121 26 C -0.172 4.172 27 H 0.228 0.772 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.384 3.749 19.003 19.515 hybrid contribution 0.769 0.114 0.457 0.902 sum -1.615 3.864 19.460 19.906 Atomic orbital electron populations 1.24711 0.95726 1.01022 1.02809 1.23969 0.95192 0.99490 0.98730 1.18681 0.83369 0.87948 1.02277 1.43652 1.59074 1.08020 1.07817 1.18796 1.07208 1.38065 0.83444 0.88989 1.25251 0.97432 0.93065 0.95696 1.69736 1.26967 1.26006 1.27253 0.86567 0.79030 0.79579 0.82163 1.18057 1.23117 1.20139 1.20355 0.81996 0.86233 0.86221 1.90553 1.48684 1.17805 1.84905 1.21312 0.97104 1.00745 0.94100 0.90059 1.21768 0.94403 1.02302 1.01237 1.21432 0.99629 1.00978 0.91485 1.20773 0.98563 0.99400 0.93364 1.19838 0.93803 0.95072 0.95722 1.21171 1.00660 0.95569 0.97100 1.20997 0.92883 0.99364 0.97480 1.21105 0.97919 0.96718 1.02528 1.17716 0.80497 0.95200 0.98687 1.91496 1.39199 1.87944 1.93456 1.21092 0.94348 1.02134 0.99592 0.77200 0.89875 0.87992 0.91759 0.92200 0.92409 0.91715 0.90443 0.91933 0.90669 0.90058 0.85180 0.85073 0.85014 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.39 18.47 29.55 0.55 -2.84 16 2 C -0.17 -2.98 12.00 -37.12 -0.45 -3.43 16 3 C 0.20 3.66 5.67 -6.83 -0.04 3.62 16 4 N -0.46 -11.01 2.11 -117.93 -0.25 -11.26 16 5 C -0.35 -9.88 9.62 -14.93 -0.14 -10.03 16 6 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 7 C 0.09 2.79 4.88 -17.47 -0.09 2.70 16 8 N -0.86 -26.58 13.96 55.50 0.77 -25.80 16 9 Si 0.90 23.72 24.89 -169.99 -4.23 19.48 16 10 H -0.26 -7.08 6.48 56.52 0.37 -6.71 16 11 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.46 10.77 4.66 -10.98 -0.05 10.72 16 14 O -0.54 -14.88 12.45 5.55 0.07 -14.81 16 15 C -0.11 -1.89 2.14 -91.77 -0.20 -2.09 16 16 H 0.08 1.22 5.84 -51.93 -0.30 0.91 16 17 C -0.14 -2.05 8.76 37.15 0.33 -1.73 16 18 C -0.10 -1.54 4.22 -26.73 -0.11 -1.66 16 19 C -0.08 -0.97 5.10 -27.88 -0.14 -1.11 16 20 C -0.04 -0.52 5.13 -104.63 -0.54 -1.06 16 21 C -0.13 -1.35 9.70 -39.58 -0.38 -1.73 16 22 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 23 C -0.16 -1.73 10.03 -39.52 -0.40 -2.12 16 24 C 0.10 1.21 7.30 -39.42 -0.29 0.92 16 25 F -0.14 -1.85 17.27 2.25 0.04 -1.81 16 26 C -0.15 -1.88 9.68 -39.52 -0.38 -2.26 16 27 H 0.21 2.34 7.80 -54.10 -0.42 1.92 16 28 H 0.08 1.26 5.93 -51.93 -0.31 0.95 16 29 H 0.10 1.78 7.99 -51.93 -0.42 1.36 16 30 H 0.27 7.87 8.31 -40.82 -0.34 7.54 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.65 6.86 -51.93 -0.36 0.29 16 33 H 0.06 1.01 5.52 -51.93 -0.29 0.72 16 34 H 0.08 1.33 8.01 -51.93 -0.42 0.91 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.08 0.81 6.64 -51.93 -0.34 0.46 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -34.40 346.32 -6.51 -40.91 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.40 Total: 1.41 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.73 Total: -13.35 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.53 Total: -37.06 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.23 Total: 19.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.40 -6.51 -40.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281637405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.527 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds