Wall clock time and date at job start Tue Mar 31 2020 08:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47126 * 2 1 4 4 H 1.08997 * 109.47303 * 55.00467 * 3 2 1 5 5 C 1.50708 * 109.46980 * 175.00117 * 3 2 1 6 6 H 1.07994 * 119.99531 * 119.99864 * 5 3 2 7 7 C 1.37869 * 119.99955 * 300.00150 * 5 3 2 8 8 N 1.31519 * 120.00417 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47323 * 59.99854 * 9 7 5 11 11 H 1.48498 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47074 * 299.99470 * 9 7 5 13 13 N 1.46503 * 109.47061 * 294.99872 * 3 2 1 14 14 C 1.34778 * 119.99517 * 85.00496 * 13 3 2 15 15 O 1.21579 * 120.00127 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99395 * 180.02562 * 14 13 3 17 17 C 1.39982 * 119.99773 * 175.54360 * 16 14 13 18 18 C 1.39126 * 120.09243 * 34.63700 * 17 16 14 19 19 C 1.38216 * 120.10297 * 179.97438 * 18 17 16 20 20 C 1.38015 * 120.41362 * 0.04454 * 19 18 17 21 21 C 1.39616 * 119.97130 * 359.97438 * 20 19 18 22 22 C 1.38172 * 120.09259 * 214.36052 * 17 16 14 23 23 C 1.50812 * 133.26358 * 0.68018 * 22 17 16 24 24 N 1.46733 * 106.25097 * 179.53280 * 23 22 17 25 25 C 1.34427 * 108.73834 * 359.77512 * 24 23 22 26 26 O 1.21552 * 124.85132 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47174 * 59.99884 * 1 2 3 29 29 H 1.09001 * 109.46436 * 299.99867 * 1 2 3 30 30 H 1.09004 * 109.47013 * 120.00403 * 2 1 3 31 31 H 1.09005 * 109.47092 * 239.99813 * 2 1 3 32 32 H 0.96992 * 120.00337 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00018 * 265.00297 * 13 3 2 34 34 H 0.96995 * 120.00618 * 355.53450 * 16 14 13 35 35 H 1.07995 * 119.94784 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.78722 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.01372 * 180.02562 * 20 19 18 38 38 H 1.09005 * 110.28311 * 60.23228 * 23 22 17 39 39 H 1.08997 * 109.91061 * 298.63242 * 23 22 17 40 40 H 0.97001 * 125.62838 * 179.75910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2176 2.6507 12 1 6.5975 0.1471 0.2348 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6319 -0.4320 16 7 0.0785 3.2665 -2.5187 17 6 -1.2175 3.7730 -2.6715 18 6 -1.8842 4.3237 -1.5816 19 6 -3.1637 4.8244 -1.7323 20 6 -3.7902 4.7821 -2.9613 21 6 -3.1308 4.2313 -4.0618 22 6 -1.8360 3.7327 -3.9064 23 6 -1.4134 3.2129 -5.2576 24 7 -2.5402 3.4615 -6.1640 25 6 -3.5302 4.0501 -5.4709 26 8 -4.6016 4.3842 -5.9378 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.8293 -0.0605 2.9502 33 1 2.2719 2.1230 -1.9978 34 1 0.7197 3.3489 -3.2418 35 1 -1.4013 4.3600 -0.6163 36 1 -3.6764 5.2512 -0.8829 37 1 -4.7899 5.1756 -3.0719 38 1 -1.2051 2.1443 -5.2031 39 1 -0.5298 3.7501 -5.6022 40 1 -2.5662 3.2383 -7.1076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287728062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:20 Heat of formation + Delta-G solvation = -23.793343 kcal Electronic energy + Delta-G solvation = -24400.152976 eV Core-core repulsion = 20794.198775 eV Total energy + Delta-G solvation = -3605.954201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32136 -39.88051 -38.01070 -36.08473 -35.46212 -34.31487 -32.50952 -31.07718 -30.77672 -29.40619 -27.06455 -26.63977 -24.12836 -23.09068 -21.90731 -21.42752 -19.91908 -19.62618 -18.41390 -17.60523 -17.22867 -16.27468 -16.03791 -15.90158 -15.58499 -15.16988 -14.92939 -14.37312 -14.22371 -13.88680 -13.57062 -13.48164 -13.31847 -12.78949 -12.71479 -12.17751 -12.04774 -11.63370 -11.48847 -11.31136 -11.05111 -10.89448 -10.39864 -10.35764 -10.22312 -10.17252 -9.67647 -9.57212 -9.46385 -9.12635 -8.92206 -8.57637 -8.19079 -7.83806 -6.19146 -4.29151 0.72474 1.19693 2.69490 2.93161 3.01743 3.20579 3.26857 3.27882 3.58312 3.86146 3.96955 4.23491 4.25913 4.77643 4.85152 5.04100 5.08199 5.12676 5.23187 5.38667 5.49235 5.68226 5.96344 6.16851 6.34839 6.36344 6.41795 6.47829 6.54351 6.60441 6.69295 6.90574 6.96132 7.05136 7.25421 7.28928 7.35886 7.57015 7.77815 7.87962 7.99909 8.11226 8.62947 8.74147 9.11844 9.38888 10.86068 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.003168 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.061377 B = 8836.591875 C = 9137.833689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.574 6.574 16 N -0.697 5.697 17 C 0.203 3.797 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.069 4.069 21 C -0.145 4.145 22 C -0.129 4.129 23 C 0.148 3.852 24 N -0.724 5.724 25 C 0.565 3.435 26 O -0.532 6.532 27 H 0.021 0.979 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.386 0.614 34 H 0.402 0.598 35 H 0.156 0.844 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 5.956 -12.719 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.367 5.367 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.345 5.345 17 C 0.106 3.894 18 C -0.108 4.108 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.149 4.149 22 C -0.133 4.133 23 C 0.024 3.976 24 N -0.381 5.381 25 C 0.353 3.647 26 O -0.410 6.410 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.218 0.782 34 H 0.237 0.763 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.934 5.919 -11.755 15.368 hybrid contribution 1.739 -0.232 -1.019 2.029 sum -6.196 5.687 -12.774 15.294 Atomic orbital electron populations 1.21816 0.98232 0.97984 1.01254 1.21963 0.92697 0.99820 1.02285 1.18741 0.94036 0.88910 0.79801 0.93121 1.21169 0.90593 1.39383 1.06411 0.92131 1.24868 0.98633 0.94727 0.95342 1.69876 1.35288 1.37336 1.09295 0.86504 0.84746 0.78324 0.77501 1.20183 1.21105 1.20171 1.45862 1.13139 1.58276 1.19404 1.16099 0.83757 0.78693 0.82106 1.90890 1.51740 1.64640 1.37882 1.42867 1.11773 1.61449 1.18448 1.16639 0.85280 0.95808 0.91703 1.21702 0.95142 0.94322 0.99593 1.21067 0.94858 0.99715 0.96990 1.20770 0.99818 0.97502 0.90829 1.20038 0.95503 1.04799 0.94549 1.20028 0.95567 1.03304 0.94433 1.20315 0.89607 1.01700 0.86013 1.45764 1.16869 1.62943 1.12501 1.18309 0.83303 0.76753 0.86324 1.90797 1.23224 1.51634 1.75319 0.95968 0.94340 0.93097 0.88222 0.95084 0.92405 0.78174 0.76282 0.82634 0.84709 0.85243 0.88683 0.89005 0.73543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.29 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.34 8.73 -34.44 -0.30 -13.64 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.69 11.29 55.43 0.63 -23.06 16 9 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.72 -13.25 5.03 -59.81 -0.30 -13.55 16 14 C 0.69 12.22 6.98 -86.92 -0.61 11.62 16 15 O -0.57 -12.03 10.89 5.30 0.06 -11.97 16 16 N -0.70 -9.02 5.34 -14.32 -0.08 -9.10 16 17 C 0.20 2.65 6.29 -83.83 -0.53 2.12 16 18 C -0.09 -1.20 8.71 -39.26 -0.34 -1.54 16 19 C -0.11 -1.26 10.01 -39.67 -0.40 -1.65 16 20 C -0.07 -0.82 10.10 -39.15 -0.40 -1.22 16 21 C -0.14 -1.83 6.26 -105.06 -0.66 -2.49 16 22 C -0.13 -1.47 6.29 -104.08 -0.65 -2.12 16 23 C 0.15 1.19 7.75 -5.01 -0.04 1.16 16 24 N -0.72 -6.59 6.41 -62.39 -0.40 -6.99 16 25 C 0.57 7.34 8.35 -12.61 -0.11 7.24 16 26 O -0.53 -8.66 18.04 5.32 0.10 -8.56 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 29 H 0.05 1.16 7.84 -51.93 -0.41 0.76 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.39 6.02 8.56 -40.82 -0.35 5.67 16 34 H 0.40 3.79 8.83 -40.82 -0.36 3.43 16 35 H 0.16 2.45 6.19 -52.49 -0.33 2.12 16 36 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.42 2.78 8.96 -40.82 -0.37 2.42 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -31.53 333.12 -8.98 -40.51 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -4.88 Total: 11.00 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: -4.10 Total: 1.97 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.15 Total: -52.69 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.15 Total: -20.53 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.53 -8.98 -40.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287728062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.718 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds