Wall clock time and date at job start Tue Mar 31 2020 08:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47126 * 2 1 4 4 H 1.08997 * 109.47303 * 55.00467 * 3 2 1 5 5 C 1.50708 * 109.46980 * 175.00117 * 3 2 1 6 6 H 1.07994 * 119.99531 * 119.99864 * 5 3 2 7 7 C 1.37869 * 119.99955 * 300.00150 * 5 3 2 8 8 N 1.31519 * 120.00417 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47323 * 59.99854 * 9 7 5 11 11 H 1.48498 * 109.47037 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47074 * 299.99470 * 9 7 5 13 13 N 1.46503 * 109.47061 * 294.99872 * 3 2 1 14 14 C 1.34778 * 119.99517 * 85.00496 * 13 3 2 15 15 O 1.21579 * 120.00127 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99395 * 180.02562 * 14 13 3 17 17 C 1.39982 * 119.99773 * 175.54360 * 16 14 13 18 18 C 1.39126 * 120.09243 * 34.63700 * 17 16 14 19 19 C 1.38216 * 120.10297 * 179.97438 * 18 17 16 20 20 C 1.38015 * 120.41362 * 0.04454 * 19 18 17 21 21 C 1.39616 * 119.97130 * 359.97438 * 20 19 18 22 22 C 1.38172 * 120.09259 * 214.36052 * 17 16 14 23 23 C 1.50812 * 133.26358 * 0.68018 * 22 17 16 24 24 N 1.46733 * 106.25097 * 179.53280 * 23 22 17 25 25 C 1.34427 * 108.73834 * 359.77512 * 24 23 22 26 26 O 1.21552 * 124.85132 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47174 * 59.99884 * 1 2 3 29 29 H 1.09001 * 109.46436 * 299.99867 * 1 2 3 30 30 H 1.09004 * 109.47013 * 120.00403 * 2 1 3 31 31 H 1.09005 * 109.47092 * 239.99813 * 2 1 3 32 32 H 0.96992 * 120.00337 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00018 * 265.00297 * 13 3 2 34 34 H 0.96995 * 120.00618 * 355.53450 * 16 14 13 35 35 H 1.07995 * 119.94784 * 359.97438 * 18 17 16 36 36 H 1.08006 * 119.78722 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.01372 * 180.02562 * 20 19 18 38 38 H 1.09005 * 110.28311 * 60.23228 * 23 22 17 39 39 H 1.08997 * 109.91061 * 298.63242 * 23 22 17 40 40 H 0.97001 * 125.62838 * 179.75910 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8811 1.3816 10 1 6.4995 2.2813 1.3820 11 1 6.3978 0.2176 2.6507 12 1 6.5975 0.1471 0.2348 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6319 -0.4320 16 7 0.0785 3.2665 -2.5187 17 6 -1.2175 3.7730 -2.6715 18 6 -1.8842 4.3237 -1.5816 19 6 -3.1637 4.8244 -1.7323 20 6 -3.7902 4.7821 -2.9613 21 6 -3.1308 4.2313 -4.0618 22 6 -1.8360 3.7327 -3.9064 23 6 -1.4134 3.2129 -5.2576 24 7 -2.5402 3.4615 -6.1640 25 6 -3.5302 4.0501 -5.4709 26 8 -4.6016 4.3842 -5.9378 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.8293 -0.0605 2.9502 33 1 2.2719 2.1230 -1.9978 34 1 0.7197 3.3489 -3.2418 35 1 -1.4013 4.3600 -0.6163 36 1 -3.6764 5.2512 -0.8829 37 1 -4.7899 5.1756 -3.0719 38 1 -1.2051 2.1443 -5.2031 39 1 -0.5298 3.7501 -5.6022 40 1 -2.5662 3.2383 -7.1076 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287728062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:20 Heat of formation + Delta-G solvation = -47.313990 kcal Electronic energy + Delta-G solvation = -24401.172908 eV Core-core repulsion = 20794.198775 eV Total energy + Delta-G solvation = -3606.974133 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29599 -41.16924 -39.14383 -37.25906 -36.81096 -35.63697 -34.27992 -32.75777 -31.69395 -30.57706 -28.74513 -27.58424 -25.32967 -24.72375 -22.92310 -22.70601 -21.36666 -21.02107 -19.79937 -18.70797 -18.19750 -17.87393 -17.09053 -17.04144 -16.81413 -16.46102 -16.35902 -15.76564 -15.55418 -14.93775 -14.77677 -14.52401 -14.47842 -14.29519 -14.06504 -13.52641 -13.38234 -13.15460 -13.09358 -12.84805 -12.62503 -12.39283 -12.15076 -12.03921 -11.60267 -11.38152 -11.28086 -11.02735 -10.86177 -10.49554 -10.39328 -9.89748 -9.67917 -9.03177 -8.12585 -6.29315 -0.25211 0.23104 1.48437 1.49485 1.56943 1.67489 1.79148 2.19114 2.28555 2.45304 2.81265 3.07025 3.17424 3.37954 3.47554 4.01148 4.22597 4.32706 4.43742 4.48806 4.54720 4.56188 4.62360 4.77707 4.80748 5.03956 5.10726 5.17984 5.31457 5.37962 5.45287 5.48979 5.59406 5.65014 5.66218 5.79827 5.90119 5.93946 5.94289 6.21338 6.29776 6.79158 7.13077 7.29078 7.39227 7.75292 8.92345 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.028447 B = 0.003168 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.061377 B = 8836.591875 C = 9137.833689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.713 5.713 14 C 0.694 3.306 15 O -0.610 6.610 16 N -0.675 5.675 17 C 0.186 3.814 18 C -0.105 4.105 19 C -0.105 4.105 20 C -0.070 4.070 21 C -0.164 4.164 22 C -0.113 4.113 23 C 0.146 3.854 24 N -0.704 5.704 25 C 0.558 3.442 26 O -0.575 6.575 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.423 0.577 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 5.950 -15.172 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.365 5.365 14 C 0.395 3.605 15 O -0.490 6.490 16 N -0.324 5.324 17 C 0.090 3.910 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.168 4.168 22 C -0.118 4.118 23 C 0.023 3.977 24 N -0.360 5.360 25 C 0.347 3.653 26 O -0.456 6.456 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.238 0.762 34 H 0.261 0.739 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -6.809 5.925 -14.307 16.916 hybrid contribution 1.335 -0.180 -0.278 1.375 sum -5.474 5.745 -14.585 16.604 Atomic orbital electron populations 1.21641 0.97045 0.98780 1.00281 1.21807 0.93624 0.99371 1.01259 1.18246 0.93293 0.88758 0.80315 0.98037 1.21551 0.91456 1.38844 1.06653 0.90818 1.25712 1.02974 0.94499 0.95134 1.70036 1.37027 1.38358 1.09832 0.85473 0.79497 0.78369 0.77434 1.19733 1.21583 1.18933 1.45416 1.14060 1.58512 1.18504 1.16141 0.82986 0.78573 0.82839 1.90885 1.52674 1.65781 1.39654 1.42421 1.12306 1.60275 1.17430 1.16647 0.85297 0.96836 0.92265 1.21644 0.96172 0.95683 0.99056 1.21219 0.94124 0.99263 0.97753 1.20987 1.00325 0.96921 0.90708 1.20261 0.96272 1.05499 0.94808 1.20171 0.94754 1.01723 0.95115 1.20626 0.90015 1.03318 0.83784 1.45730 1.16048 1.61053 1.13219 1.18428 0.83369 0.76933 0.86617 1.90775 1.25019 1.53856 1.75970 0.94147 0.93758 0.95546 0.91135 0.94013 0.92675 0.76189 0.73901 0.85090 0.82737 0.84107 0.86515 0.85189 0.71899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.51 71.98 0.61 -4.55 16 2 C -0.12 -5.64 5.45 30.59 0.17 -5.47 16 3 C 0.30 14.11 2.24 44.25 0.10 14.21 16 4 H 0.00 0.10 7.58 -2.39 -0.02 0.08 16 5 C -0.55 -27.00 8.73 25.60 0.22 -26.78 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 0.88 5.29 84.65 0.45 1.32 16 8 N -0.91 -50.31 11.29 21.44 0.24 -50.07 16 9 Si 0.97 40.13 29.54 68.60 2.03 42.16 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 13 N -0.71 -25.78 5.03 -461.41 -2.32 -28.10 16 14 C 0.69 24.08 6.98 179.05 1.25 25.33 16 15 O -0.61 -26.13 10.89 -3.97 -0.04 -26.17 16 16 N -0.67 -16.16 5.34 -317.49 -1.70 -17.85 16 17 C 0.19 4.57 6.29 38.04 0.24 4.81 16 18 C -0.10 -2.88 8.71 22.48 0.20 -2.69 16 19 C -0.11 -2.40 10.01 22.21 0.22 -2.18 16 20 C -0.07 -1.58 10.10 22.55 0.23 -1.36 16 21 C -0.16 -3.88 6.26 -20.15 -0.13 -4.00 16 22 C -0.11 -2.29 6.29 -19.51 -0.12 -2.42 16 23 C 0.15 1.74 7.75 85.62 0.66 2.40 16 24 N -0.70 -10.57 6.41 -469.79 -3.01 -13.58 16 25 C 0.56 13.55 8.35 86.76 0.72 14.27 16 26 O -0.57 -18.33 18.04 -3.88 -0.07 -18.40 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 29 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 30 H 0.07 3.72 5.95 -2.38 -0.01 3.71 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 33 H 0.40 11.72 8.56 -92.71 -0.79 10.93 16 34 H 0.42 6.56 8.83 -92.71 -0.82 5.74 16 35 H 0.13 4.30 6.19 -2.91 -0.02 4.28 16 36 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.44 4.30 8.96 -92.71 -0.83 3.47 16 Total: -1.00 -70.86 333.12 -1.37 -72.24 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -1.32 Total: 26.86 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 4.82 Total: 12.92 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -6.78 Total: -109.60 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.11 Total: -44.57 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -70.86 -1.37 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287728062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.922 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds