Wall clock time and date at job start Tue Mar 31 2020 09:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35919 * 117.00108 * 2 1 4 4 C 1.38178 * 120.21480 * 359.72529 * 3 2 1 5 5 C 1.38824 * 120.67730 * 179.78255 * 4 3 2 6 6 C 1.36717 * 120.58940 * 0.46887 * 5 4 3 7 7 C 1.39245 * 119.75411 * 359.77635 * 6 5 4 8 8 C 1.46908 * 135.44109 * 179.97438 * 7 6 5 9 9 C 1.47365 * 126.81557 * 0.04901 * 8 7 6 10 10 O 1.21616 * 120.00182 * 354.93346 * 9 8 7 11 11 N 1.34776 * 119.99866 * 174.92758 * 9 8 7 12 12 C 1.46497 * 119.99860 * 2.84300 * 11 9 8 13 13 C 1.46496 * 120.00073 * 182.83816 * 11 9 8 14 14 H 1.09008 * 109.47111 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.47199 * 240.00458 * 13 11 9 16 16 C 1.50701 * 109.47109 * 119.99831 * 13 11 9 17 17 H 1.07997 * 119.99607 * 0.02562 * 16 13 11 18 18 C 1.37876 * 119.99847 * 180.02562 * 16 13 11 19 19 N 1.31511 * 120.00115 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00008 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46779 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47417 * 119.99727 * 20 18 16 23 23 H 1.48497 * 109.46990 * 240.00354 * 20 18 16 24 24 N 1.31600 * 106.36594 * 180.02562 * 8 7 6 25 25 N 1.28381 * 111.94325 * 359.97438 * 24 8 7 26 26 H 0.96999 * 124.38812 * 180.02562 * 25 24 8 27 27 C 1.37103 * 111.23120 * 0.02562 * 25 24 8 28 28 H 1.08999 * 109.47002 * 59.99825 * 1 2 3 29 29 H 1.09000 * 109.46735 * 300.00121 * 1 2 3 30 30 H 1.08996 * 109.47191 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.66140 * 359.97438 * 4 3 2 32 32 H 1.08011 * 119.70917 * 180.24994 * 5 4 3 33 33 H 1.07999 * 120.12173 * 179.77150 * 6 5 4 34 34 H 1.09003 * 109.47353 * 83.91835 * 12 11 9 35 35 H 1.09001 * 109.46913 * 203.91925 * 12 11 9 36 36 H 1.09004 * 109.47122 * 323.91569 * 12 11 9 37 37 H 1.08995 * 109.47389 * 60.00357 * 15 13 11 38 38 H 1.09003 * 109.46776 * 180.02562 * 15 13 11 39 39 H 1.08998 * 109.47072 * 299.99403 * 15 13 11 40 40 H 0.97008 * 119.99863 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3727 -0.0057 5 6 1.9181 3.6147 -0.0012 6 6 3.2819 3.7113 -0.0007 7 6 4.0566 2.5543 0.0000 8 6 5.4955 2.2580 0.0003 9 6 6.5984 3.2354 0.0007 10 8 6.3577 4.4239 -0.0921 11 7 7.8738 2.8122 0.1041 12 6 8.1679 1.3779 0.1533 13 6 8.9660 3.7865 0.1672 14 1 8.5562 4.7954 0.1179 15 6 9.9169 3.5637 -1.0104 16 6 9.7193 3.6136 1.4610 17 1 9.4151 2.8537 2.1654 18 6 10.7967 4.4256 1.7451 19 7 11.1668 5.3513 0.8874 20 14 11.7309 4.2108 3.3485 21 1 11.1189 3.1093 4.1341 22 1 13.1489 3.8816 3.0549 23 1 11.6671 5.4711 4.1312 24 7 5.6041 0.9465 0.0005 25 7 4.4569 0.3702 0.0010 26 1 4.3267 -0.5911 0.0016 27 6 3.4395 1.2892 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2196 2.3139 -0.0106 32 1 1.3180 4.5127 -0.0017 33 1 3.7565 4.6814 -0.0009 34 1 8.2107 0.9808 -0.8609 35 1 9.1274 1.2205 0.6459 36 1 7.3845 0.8653 0.7115 37 1 9.3721 3.6888 -1.9461 38 1 10.7298 4.2883 -0.9632 39 1 10.3267 2.5549 -0.9607 40 1 11.9246 5.9228 1.0876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288654373.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:11 Heat of formation + Delta-G solvation = 30.820350 kcal Electronic energy + Delta-G solvation = -24507.771770 eV Core-core repulsion = 20904.185796 eV Total energy + Delta-G solvation = -3603.585974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.42246 -39.64384 -38.63909 -36.84246 -35.23900 -32.95263 -31.90617 -30.44745 -29.73903 -28.79540 -27.59134 -26.04177 -25.17914 -23.91301 -22.90922 -22.34606 -20.57157 -19.10136 -18.04870 -17.65096 -16.86244 -16.34170 -16.22929 -15.92186 -15.40565 -15.26338 -14.90632 -14.86758 -14.23756 -14.05931 -13.61407 -12.95143 -12.72900 -12.47776 -12.38765 -12.22581 -11.81990 -11.56244 -11.51011 -11.45792 -11.32015 -11.04875 -10.80841 -10.67728 -10.36880 -10.18640 -10.13223 -9.67856 -9.20741 -9.07429 -8.86260 -8.39339 -7.74324 -7.48550 -6.03418 -4.10934 0.88596 1.30502 2.12475 2.74619 2.90645 3.29395 3.37196 3.40735 3.58084 3.85857 4.05489 4.40553 4.47401 4.57150 4.67482 4.82371 4.88289 5.00171 5.07734 5.21438 5.27857 5.36376 5.53133 5.72929 5.97199 6.14406 6.27156 6.39589 6.51986 6.59125 6.60622 6.82048 6.88693 6.96213 7.11454 7.14257 7.48556 7.57971 7.76152 7.92053 8.07624 8.23443 8.55821 8.86305 9.06408 9.55199 11.01990 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.003374 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.745606 B = 8296.061182 C = 8522.650974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.324 6.324 3 C 0.122 3.878 4 C -0.183 4.183 5 C -0.109 4.109 6 C -0.072 4.072 7 C -0.076 4.076 8 C 0.020 3.980 9 C 0.586 3.414 10 O -0.542 6.542 11 N -0.573 5.573 12 C 0.080 3.920 13 C 0.257 3.743 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.525 4.525 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 N -0.200 5.200 25 N -0.415 5.415 26 H 0.446 0.554 27 C 0.046 3.954 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.143 0.857 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.094 0.906 39 H 0.030 0.970 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.937 -10.922 -2.728 22.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.238 6.238 3 C 0.075 3.925 4 C -0.204 4.204 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.083 4.083 8 C -0.151 4.151 9 C 0.371 3.629 10 O -0.419 6.419 11 N -0.303 5.303 12 C -0.064 4.064 13 C 0.158 3.842 14 H 0.083 0.917 15 C -0.204 4.204 16 C -0.563 4.563 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 N -0.030 5.030 25 N -0.134 5.134 26 H 0.291 0.709 27 C -0.068 4.068 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.996 -11.181 -2.800 22.219 hybrid contribution -0.358 -0.156 0.871 0.955 sum -19.354 -11.336 -1.929 22.512 Atomic orbital electron populations 1.23039 0.77990 1.03889 1.01564 1.85995 1.21741 1.26665 1.89370 1.17714 0.87658 0.85196 1.01961 1.20956 0.99636 0.91489 1.08362 1.20553 0.94192 0.96894 1.01172 1.20375 0.92690 0.97958 0.98185 1.19295 0.91551 0.92369 1.05111 1.23264 0.93123 0.89537 1.09147 1.16721 0.81484 0.86168 0.78549 1.90746 1.83398 1.15599 1.52178 1.48146 1.05886 1.08307 1.67993 1.21903 1.02663 0.81108 1.00738 1.19032 0.82136 0.88614 0.94441 0.91658 1.22082 1.01449 1.01301 0.95617 1.21370 1.13388 1.18570 1.02997 0.92077 1.24883 0.96964 0.94887 0.97021 1.69894 1.27316 1.20212 1.35141 0.86435 0.79474 0.78084 0.83379 1.19802 1.20964 1.20916 1.73296 1.06899 1.09358 1.13458 1.43167 1.00746 1.09320 1.60170 0.70928 1.18361 0.88415 0.90558 1.09447 0.92485 0.92479 0.88294 0.84891 0.85094 0.83934 0.93930 0.90364 0.90623 0.96876 0.88753 0.95072 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.25 10.51 -19.49 -0.20 -3.46 16 3 C 0.12 1.46 6.70 -39.11 -0.26 1.20 16 4 C -0.18 -1.91 9.03 -39.39 -0.36 -2.27 16 5 C -0.11 -1.25 9.97 -39.91 -0.40 -1.65 16 6 C -0.07 -1.07 9.86 -39.76 -0.39 -1.47 16 7 C -0.08 -1.27 6.34 -105.06 -0.67 -1.94 16 8 C 0.02 0.38 7.01 -80.75 -0.57 -0.18 16 9 C 0.59 13.30 7.67 -12.55 -0.10 13.20 16 10 O -0.54 -13.71 15.73 5.26 0.08 -13.63 16 11 N -0.57 -13.13 2.75 -176.55 -0.49 -13.61 16 12 C 0.08 1.52 8.56 59.85 0.51 2.03 16 13 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 14 H 0.07 1.95 6.90 -51.92 -0.36 1.59 16 15 C -0.15 -3.59 8.97 37.16 0.33 -3.25 16 16 C -0.52 -14.42 7.95 -34.44 -0.27 -14.69 16 17 H 0.06 1.67 7.44 -52.49 -0.39 1.28 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 N -0.20 -3.25 8.64 34.47 0.30 -2.95 16 25 N -0.42 -5.53 6.85 32.41 0.22 -5.31 16 26 H 0.45 4.31 8.96 -190.49 -1.71 2.60 16 27 C 0.05 0.66 7.32 -84.06 -0.62 0.04 16 28 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.06 0.28 7.68 -51.93 -0.40 -0.11 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.13 0.96 6.27 -52.49 -0.33 0.63 16 32 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.14 2.24 7.64 -52.49 -0.40 1.84 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.52 7.12 -51.93 -0.37 1.15 16 36 H 0.08 1.33 5.38 -51.93 -0.28 1.05 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 39 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -32.70 333.37 -7.69 -40.39 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.17 Total: 1.49 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -2.06 Total: 0.45 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.66 Total: -46.50 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.12 Total: -17.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.70 -7.69 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288654373.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.213 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds