Wall clock time and date at job start Tue Mar 31 2020 08:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99722 * 2 1 4 4 N 1.46501 * 109.47185 * 125.00629 * 3 2 1 5 5 C 1.46505 * 119.99527 * 270.00329 * 4 3 2 6 6 C 1.50698 * 109.47038 * 269.99446 * 5 4 3 7 7 H 1.08001 * 119.99866 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99907 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46836 * 90.00378 * 10 8 6 12 12 H 1.48502 * 109.46914 * 210.00073 * 10 8 6 13 13 H 1.48498 * 109.47068 * 329.99994 * 10 8 6 14 14 C 1.34772 * 120.00382 * 89.99705 * 4 3 2 15 15 O 1.21706 * 120.00170 * 180.02562 * 14 4 3 16 16 C 1.46346 * 119.99715 * 0.02562 * 14 4 3 17 17 C 1.34885 * 119.99798 * 185.55643 * 16 14 4 18 18 C 1.50700 * 120.00215 * 5.69098 * 17 16 14 19 19 C 1.47109 * 119.99766 * 185.68834 * 17 16 14 20 20 C 1.39894 * 120.14468 * 294.72418 * 19 17 16 21 21 C 1.37792 * 119.85342 * 179.71929 * 20 19 17 22 22 C 1.38687 * 120.14148 * 0.56071 * 21 20 19 23 23 F 1.35098 * 119.85350 * 179.69760 * 22 21 20 24 24 C 1.38680 * 120.29282 * 359.71405 * 22 21 20 25 25 C 1.37793 * 120.14419 * 0.02562 * 24 22 21 26 26 H 1.07998 * 119.99430 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00430 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00430 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47110 * 5.00638 * 3 2 1 30 30 H 1.08998 * 109.47399 * 245.00433 * 3 2 1 31 31 H 1.08996 * 109.47560 * 29.99432 * 5 4 3 32 32 H 1.09001 * 109.46900 * 150.00071 * 5 4 3 33 33 H 0.97000 * 119.99381 * 179.97438 * 9 8 6 34 34 H 1.08004 * 119.99744 * 5.55554 * 16 14 4 35 35 H 1.09004 * 109.47456 * 174.78865 * 18 17 16 36 36 H 1.08996 * 109.47258 * 54.79044 * 18 17 16 37 37 H 1.08997 * 109.46771 * 294.78965 * 18 17 16 38 38 H 1.08001 * 120.07490 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.92946 * 180.27492 * 21 20 19 40 40 H 1.08002 * 119.92753 * 179.97438 * 24 22 21 41 41 H 1.08000 * 120.06930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3032 3.8370 1.6366 8 6 2.5193 4.0664 3.6088 9 7 2.7679 5.3569 3.6571 10 14 1.7247 3.2129 5.0681 11 1 2.7808 2.7217 5.9894 12 1 0.8487 4.1731 5.7863 13 1 0.9131 2.0654 4.5887 14 6 4.2497 0.8663 0.9823 15 8 5.0225 0.8881 1.9223 16 6 4.6843 0.3343 -0.3100 17 6 5.9016 -0.2339 -0.4305 18 6 6.7624 -0.4372 0.7897 19 6 6.3891 -0.6552 -1.7530 20 6 5.7433 -1.6858 -2.4442 21 6 6.2013 -2.0717 -3.6851 22 6 7.3071 -1.4485 -4.2439 23 9 7.7550 -1.8357 -5.4583 24 6 7.9554 -0.4300 -3.5615 25 6 7.5042 -0.0310 -2.3222 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4027 -0.9314 31 1 1.4888 1.6965 2.5460 32 1 3.0991 1.3602 3.2259 33 1 2.5389 5.8654 4.4508 34 1 4.0301 0.3967 -1.1672 35 1 7.6610 -0.9886 0.5127 36 1 6.2055 -1.0022 1.5372 37 1 7.0434 0.5320 1.2016 38 1 4.8845 -2.1747 -2.0083 39 1 5.7010 -2.8642 -4.2217 40 1 8.8163 0.0509 -4.0021 41 1 8.0102 0.7620 -1.7917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292259302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:39 Heat of formation + Delta-G solvation = -13.766505 kcal Electronic energy + Delta-G solvation = -23736.416303 eV Core-core repulsion = 20110.976937 eV Total energy + Delta-G solvation = -3625.439367 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.13094 -39.70390 -38.92741 -35.99462 -34.57270 -33.13948 -32.13003 -31.46356 -29.82014 -28.74592 -27.13636 -25.50827 -23.76514 -23.17194 -22.29062 -20.21433 -19.68477 -18.04549 -17.80283 -16.92413 -16.81027 -16.47114 -15.86323 -15.76849 -15.13130 -14.72179 -14.41105 -14.36393 -13.94882 -13.83486 -13.53440 -13.35466 -13.19195 -13.02523 -12.49090 -12.34150 -12.18712 -11.88303 -11.68532 -11.63797 -11.38232 -11.27940 -11.16409 -10.92559 -10.52917 -10.14850 -9.55790 -9.41868 -9.28864 -9.25816 -8.91952 -8.58909 -8.56181 -7.70293 -6.08783 -4.07402 0.69637 0.97690 1.58241 2.36468 3.28584 3.29341 3.35278 3.37052 3.81065 3.94884 3.99548 4.39557 4.48386 4.52316 4.58740 4.95785 5.07914 5.08546 5.14245 5.23151 5.30212 5.37267 5.57394 5.63552 5.66906 5.78355 5.84241 5.87915 5.94463 6.00965 6.11142 6.17799 6.22998 6.49401 6.55066 6.66343 6.71400 6.76621 6.84570 6.97055 7.36250 7.61288 8.24990 8.46872 8.92522 8.98518 9.51669 11.04598 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003308 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.246052 B = 8461.026583 C = 9183.081323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.135 3.865 4 N -0.584 5.584 5 C 0.218 3.782 6 C -0.528 4.528 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.537 3.463 15 O -0.536 6.536 16 C -0.195 4.195 17 C -0.019 4.019 18 C -0.107 4.107 19 C -0.058 4.058 20 C -0.078 4.078 21 C -0.152 4.152 22 C 0.093 3.907 23 F -0.142 7.142 24 C -0.151 4.151 25 C -0.073 4.073 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.037 0.963 33 H 0.264 0.736 34 H 0.126 0.874 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 -15.200 -14.659 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.314 5.314 5 C 0.097 3.903 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.327 3.673 15 O -0.415 6.415 16 C -0.215 4.215 17 C -0.021 4.021 18 C -0.163 4.163 19 C -0.059 4.059 20 C -0.096 4.096 21 C -0.171 4.171 22 C 0.074 3.926 23 F -0.121 7.121 24 C -0.170 4.170 25 C -0.091 4.091 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.517 -15.006 -14.061 21.054 hybrid contribution -0.526 -0.310 0.416 0.739 sum 3.991 -15.317 -13.644 20.897 Atomic orbital electron populations 1.23842 0.95868 1.01806 1.00730 1.23463 0.96357 0.99084 0.99747 1.20640 0.93045 0.95301 0.89876 1.47794 1.10585 1.60091 1.12897 1.19645 0.94877 0.95124 0.80637 1.21334 1.41108 0.91140 1.03055 0.90745 1.24850 0.95288 0.94713 0.98122 1.69899 1.47853 1.06606 1.29262 0.86864 0.79887 0.79685 0.83362 1.19908 1.21095 1.19033 1.18090 0.82186 0.78987 0.88029 1.90773 1.51999 1.56841 1.41916 1.23061 0.97013 1.03151 0.98322 1.20954 0.94204 0.94033 0.92892 1.20948 0.97495 1.03645 0.94198 1.19063 0.95986 0.96689 0.94125 1.21222 0.99241 0.95795 0.93307 1.21063 0.96964 1.02083 0.96962 1.17878 0.95791 0.97099 0.81802 1.91495 1.88678 1.90245 1.41639 1.21078 1.01776 0.97990 0.96120 1.21182 0.94867 0.98890 0.94177 0.88765 0.88233 0.87681 0.89303 0.90297 0.95265 0.94533 0.92579 0.85616 0.93270 0.90115 0.89060 0.84623 0.84582 0.84498 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 14.32 29.01 0.42 -1.81 16 2 C -0.17 -2.22 9.85 -36.03 -0.35 -2.58 16 3 C 0.14 2.13 5.59 -5.19 -0.03 2.10 16 4 N -0.58 -11.86 2.44 -178.11 -0.43 -12.29 16 5 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 6 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 7 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 10 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.54 10.69 7.54 -13.00 -0.10 10.59 16 15 O -0.54 -12.43 12.82 5.18 0.07 -12.36 16 16 C -0.19 -2.91 8.86 -37.51 -0.33 -3.24 16 17 C -0.02 -0.25 5.48 -102.21 -0.56 -0.81 16 18 C -0.11 -1.49 8.32 36.01 0.30 -1.19 16 19 C -0.06 -0.65 5.23 -105.06 -0.55 -1.19 16 20 C -0.08 -0.74 9.73 -39.13 -0.38 -1.12 16 21 C -0.15 -1.37 10.01 -39.58 -0.40 -1.77 16 22 C 0.09 0.93 7.31 -39.25 -0.29 0.64 16 23 F -0.14 -1.49 17.26 2.25 0.04 -1.45 16 24 C -0.15 -1.41 10.01 -39.58 -0.40 -1.81 16 25 C -0.07 -0.74 9.78 -39.12 -0.38 -1.12 16 26 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.10 1.19 7.84 -52.49 -0.41 0.77 16 28 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 30 H 0.08 1.07 6.03 -51.93 -0.31 0.75 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.13 1.59 6.15 -52.48 -0.32 1.27 16 35 H 0.05 0.56 7.99 -51.93 -0.42 0.15 16 36 H 0.08 1.23 7.43 -51.93 -0.39 0.84 16 37 H 0.09 1.47 7.12 -51.93 -0.37 1.10 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -32.88 355.33 -7.85 -40.73 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.47 Total: 1.45 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.51 Total: -11.46 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.34 Total: -39.12 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.88 -7.85 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.967 kcal (2) G-P(sol) polarization free energy of solvation -32.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds