Wall clock time and date at job start Tue Mar 31 2020 08:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99722 * 2 1 4 4 N 1.46501 * 109.47185 * 125.00629 * 3 2 1 5 5 C 1.46505 * 119.99527 * 270.00329 * 4 3 2 6 6 C 1.50698 * 109.47038 * 269.99446 * 5 4 3 7 7 H 1.08001 * 119.99866 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99907 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99839 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.46836 * 90.00378 * 10 8 6 12 12 H 1.48502 * 109.46914 * 210.00073 * 10 8 6 13 13 H 1.48498 * 109.47068 * 329.99994 * 10 8 6 14 14 C 1.34772 * 120.00382 * 89.99705 * 4 3 2 15 15 O 1.21706 * 120.00170 * 180.02562 * 14 4 3 16 16 C 1.46346 * 119.99715 * 0.02562 * 14 4 3 17 17 C 1.34885 * 119.99798 * 185.55643 * 16 14 4 18 18 C 1.50700 * 120.00215 * 5.69098 * 17 16 14 19 19 C 1.47109 * 119.99766 * 185.68834 * 17 16 14 20 20 C 1.39894 * 120.14468 * 294.72418 * 19 17 16 21 21 C 1.37792 * 119.85342 * 179.71929 * 20 19 17 22 22 C 1.38687 * 120.14148 * 0.56071 * 21 20 19 23 23 F 1.35098 * 119.85350 * 179.69760 * 22 21 20 24 24 C 1.38680 * 120.29282 * 359.71405 * 22 21 20 25 25 C 1.37793 * 120.14419 * 0.02562 * 24 22 21 26 26 H 1.07998 * 119.99430 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00430 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00430 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47110 * 5.00638 * 3 2 1 30 30 H 1.08998 * 109.47399 * 245.00433 * 3 2 1 31 31 H 1.08996 * 109.47560 * 29.99432 * 5 4 3 32 32 H 1.09001 * 109.46900 * 150.00071 * 5 4 3 33 33 H 0.97000 * 119.99381 * 179.97438 * 9 8 6 34 34 H 1.08004 * 119.99744 * 5.55554 * 16 14 4 35 35 H 1.09004 * 109.47456 * 174.78865 * 18 17 16 36 36 H 1.08996 * 109.47258 * 54.79044 * 18 17 16 37 37 H 1.08997 * 109.46771 * 294.78965 * 18 17 16 38 38 H 1.08001 * 120.07490 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.92946 * 180.27492 * 21 20 19 40 40 H 1.08002 * 119.92753 * 179.97438 * 24 22 21 41 41 H 1.08000 * 120.06930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8649 2.4249 6 6 2.8442 3.3435 2.4805 7 1 3.3032 3.8370 1.6366 8 6 2.5193 4.0664 3.6088 9 7 2.7679 5.3569 3.6571 10 14 1.7247 3.2129 5.0681 11 1 2.7808 2.7217 5.9894 12 1 0.8487 4.1731 5.7863 13 1 0.9131 2.0654 4.5887 14 6 4.2497 0.8663 0.9823 15 8 5.0225 0.8881 1.9223 16 6 4.6843 0.3343 -0.3100 17 6 5.9016 -0.2339 -0.4305 18 6 6.7624 -0.4372 0.7897 19 6 6.3891 -0.6552 -1.7530 20 6 5.7433 -1.6858 -2.4442 21 6 6.2013 -2.0717 -3.6851 22 6 7.3071 -1.4485 -4.2439 23 9 7.7550 -1.8357 -5.4583 24 6 7.9554 -0.4300 -3.5615 25 6 7.5042 -0.0310 -2.3222 26 1 -0.5399 -0.9353 0.0004 27 1 -0.5401 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1316 0.0897 30 1 2.6212 1.4027 -0.9314 31 1 1.4888 1.6965 2.5460 32 1 3.0991 1.3602 3.2259 33 1 2.5389 5.8654 4.4508 34 1 4.0301 0.3967 -1.1672 35 1 7.6610 -0.9886 0.5127 36 1 6.2055 -1.0022 1.5372 37 1 7.0434 0.5320 1.2016 38 1 4.8845 -2.1747 -2.0083 39 1 5.7010 -2.8642 -4.2217 40 1 8.8163 0.0509 -4.0021 41 1 8.0102 0.7620 -1.7917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292259302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:39 Heat of formation + Delta-G solvation = -31.662226 kcal Electronic energy + Delta-G solvation = -23737.192320 eV Core-core repulsion = 20110.976937 eV Total energy + Delta-G solvation = -3626.215383 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.90479 -40.99526 -39.95343 -37.40414 -35.73309 -34.97868 -33.73076 -32.18752 -31.04755 -30.18550 -28.50274 -26.87563 -25.09879 -23.91816 -23.73906 -21.46595 -20.77410 -19.30825 -19.05914 -18.64778 -18.16671 -17.32970 -17.07681 -16.58582 -16.40222 -16.24947 -15.83976 -15.43669 -15.22148 -14.83457 -14.57795 -14.50158 -14.31732 -14.28515 -14.14187 -13.63559 -13.54981 -13.20738 -13.05625 -12.94383 -12.68526 -12.52254 -12.40807 -12.24309 -12.02065 -11.93755 -11.73257 -10.83072 -10.52316 -10.33969 -10.29657 -10.12360 -9.53094 -9.29131 -8.33763 -6.38580 -0.17132 0.26677 0.46049 1.31417 1.35574 1.36448 1.45162 2.30931 2.34161 2.45356 2.60290 3.00638 3.25321 3.46883 3.79565 3.89391 3.96839 3.99431 4.14510 4.27427 4.28593 4.39309 4.47718 4.58977 4.75324 4.80857 4.86151 4.87846 4.94336 4.96510 5.07514 5.09600 5.12943 5.16735 5.31149 5.46210 5.47298 5.52600 5.59941 5.73425 5.86458 5.94138 6.25359 6.62702 6.72695 7.22055 7.44339 8.83241 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003308 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.246052 B = 8461.026583 C = 9183.081323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.179 4.179 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.229 3.771 6 C -0.534 4.534 7 H 0.028 0.972 8 C 0.012 3.988 9 N -0.945 5.945 10 Si 0.947 3.053 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.240 1.240 14 C 0.528 3.472 15 O -0.583 6.583 16 C -0.209 4.209 17 C 0.010 3.990 18 C -0.106 4.106 19 C -0.075 4.075 20 C -0.072 4.072 21 C -0.148 4.148 22 C 0.085 3.915 23 F -0.146 7.146 24 C -0.151 4.151 25 C -0.077 4.077 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.268 0.732 34 H 0.153 0.847 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -17.854 -15.957 24.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.107 3.893 6 C -0.573 4.573 7 H 0.046 0.954 8 C -0.186 4.186 9 N -0.585 5.585 10 Si 0.769 3.231 11 H -0.201 1.201 12 H -0.200 1.200 13 H -0.163 1.163 14 C 0.320 3.680 15 O -0.466 6.466 16 C -0.229 4.229 17 C 0.008 3.992 18 C -0.162 4.162 19 C -0.076 4.076 20 C -0.089 4.089 21 C -0.166 4.166 22 C 0.066 3.934 23 F -0.125 7.125 24 C -0.170 4.170 25 C -0.095 4.095 26 H 0.137 0.863 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.170 0.830 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.510 -17.678 -15.413 23.715 hybrid contribution -0.118 0.538 0.699 0.890 sum 3.392 -17.141 -14.713 22.843 Atomic orbital electron populations 1.24070 0.95476 1.02933 0.98305 1.23298 0.96669 0.98002 1.01855 1.20845 0.92540 0.96568 0.89095 1.47864 1.11784 1.59877 1.12726 1.19252 0.95276 0.92074 0.82699 1.21559 1.40487 0.93505 1.01755 0.95361 1.25832 0.95934 0.95346 1.01492 1.70052 1.49481 1.08489 1.30519 0.85732 0.79101 0.79342 0.78900 1.20052 1.19997 1.16293 1.18887 0.81494 0.78297 0.89317 1.90744 1.53097 1.58865 1.43865 1.22869 0.98493 1.05079 0.96491 1.21075 0.92960 0.91408 0.93765 1.20885 0.98657 1.02343 0.94336 1.18963 0.97123 0.98233 0.93235 1.21375 0.99338 0.95039 0.93194 1.21295 0.96478 1.02197 0.96681 1.18111 0.96204 0.97331 0.81723 1.91489 1.88777 1.90290 1.41925 1.21237 1.02181 0.97832 0.95702 1.21255 0.94646 0.99049 0.94584 0.86300 0.88422 0.86407 0.90729 0.88190 0.93771 0.96207 0.92277 0.82979 0.90554 0.91518 0.91676 0.82891 0.82339 0.82851 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 14.32 67.78 0.97 -2.64 16 2 C -0.18 -4.36 9.85 25.64 0.25 -4.11 16 3 C 0.13 4.05 5.59 85.63 0.48 4.53 16 4 N -0.59 -24.40 2.44 -835.62 -2.04 -26.43 16 5 C 0.23 11.30 4.23 85.63 0.36 11.66 16 6 C -0.53 -31.72 9.94 25.60 0.25 -31.47 16 7 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 8 C 0.01 0.71 5.47 84.65 0.46 1.17 16 9 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 10 Si 0.95 44.73 27.47 68.60 1.88 46.61 16 11 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 14 C 0.53 21.43 7.54 86.35 0.65 22.08 16 15 O -0.58 -28.24 12.82 -4.37 -0.06 -28.30 16 16 C -0.21 -6.09 8.86 23.61 0.21 -5.88 16 17 C 0.01 0.26 5.48 -18.30 -0.10 0.16 16 18 C -0.11 -2.98 8.32 71.24 0.59 -2.38 16 19 C -0.08 -1.50 5.23 -20.15 -0.11 -1.61 16 20 C -0.07 -1.14 9.73 22.57 0.22 -0.92 16 21 C -0.15 -2.19 10.01 22.27 0.22 -1.97 16 22 C 0.09 1.47 7.31 22.48 0.16 1.64 16 23 F -0.15 -2.73 17.26 44.97 0.78 -1.96 16 24 C -0.15 -2.49 10.01 22.27 0.22 -2.27 16 25 C -0.08 -1.42 9.78 22.57 0.22 -1.20 16 26 H 0.12 1.96 8.06 -2.91 -0.02 1.94 16 27 H 0.10 2.11 7.84 -2.91 -0.02 2.08 16 28 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 29 H 0.07 2.47 7.72 -2.39 -0.02 2.45 16 30 H 0.10 2.58 6.03 -2.39 -0.01 2.57 16 31 H 0.04 2.04 7.13 -2.39 -0.02 2.02 16 32 H 0.02 1.04 6.85 -2.39 -0.02 1.03 16 33 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.15 3.53 6.15 -2.91 -0.02 3.52 16 35 H 0.08 1.67 7.99 -2.38 -0.02 1.65 16 36 H 0.07 2.07 7.43 -2.39 -0.02 2.06 16 37 H 0.06 2.21 7.12 -2.39 -0.02 2.19 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -74.82 355.33 6.91 -67.91 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.97 Total: 15.15 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 5.08 Total: -13.20 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -1.74 Total: -86.21 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.06 Total: -28.30 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -74.82 6.91 -67.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292259302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.247 kcal (2) G-P(sol) polarization free energy of solvation -74.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds