Wall clock time and date at job start Tue Mar 31 2020 08:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99961 * 2 1 4 4 N 1.46492 * 109.47121 * 125.00333 * 3 2 1 5 5 C 1.46507 * 119.99809 * 269.99924 * 4 3 2 6 6 C 1.50693 * 109.47077 * 269.99933 * 5 4 3 7 7 H 1.08004 * 120.00096 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00301 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99854 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46675 * 90.00640 * 10 8 6 12 12 H 1.48504 * 109.47072 * 210.00267 * 10 8 6 13 13 H 1.48487 * 109.47276 * 330.00562 * 10 8 6 14 14 C 1.34774 * 120.00363 * 89.99528 * 4 3 2 15 15 O 1.21283 * 120.00082 * 179.97438 * 14 4 3 16 16 C 1.50704 * 119.99995 * 0.02562 * 14 4 3 17 17 F 1.39896 * 109.47271 * 79.49218 * 16 14 4 18 18 F 1.39901 * 109.46795 * 319.49532 * 16 14 4 19 19 C 1.52999 * 109.46989 * 199.50061 * 16 14 4 20 20 O 1.42893 * 110.43957 * 54.42617 * 19 16 14 21 21 C 1.54887 * 110.59772 * 177.04683 * 19 16 14 22 22 C 1.54890 * 102.74922 * 156.67291 * 21 19 16 23 23 C 1.54265 * 104.19293 * 322.05529 * 22 21 19 24 24 C 1.53872 * 106.60197 * 23.61134 * 23 22 21 25 25 H 1.08005 * 119.99879 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.99916 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00414 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46858 * 4.99832 * 3 2 1 29 29 H 1.08998 * 109.46895 * 245.00358 * 3 2 1 30 30 H 1.08998 * 109.46988 * 30.00039 * 5 4 3 31 31 H 1.09008 * 109.46951 * 150.00003 * 5 4 3 32 32 H 0.96999 * 120.00276 * 179.97438 * 9 8 6 33 33 H 0.96705 * 113.99961 * 62.72335 * 20 19 16 34 34 H 1.08999 * 110.75710 * 274.98700 * 21 19 16 35 35 H 1.09009 * 110.75902 * 38.35524 * 21 19 16 36 36 H 1.09004 * 110.48573 * 203.37740 * 22 21 19 37 37 H 1.08999 * 110.48728 * 80.73512 * 22 21 19 38 38 H 1.08999 * 110.03225 * 264.32110 * 23 22 21 39 39 H 1.09003 * 110.02569 * 142.89862 * 23 22 21 40 40 H 1.08996 * 110.03093 * 240.71506 * 24 23 22 41 41 H 1.09002 * 110.03255 * 119.27995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6367 8 6 2.5185 4.0667 3.6081 9 7 1.9591 3.4660 4.6356 10 14 2.8729 5.8995 3.6773 11 1 1.7006 6.6502 3.1600 12 1 3.1363 6.3001 5.0828 13 1 4.0634 6.2052 2.8441 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9189 16 6 4.6972 0.3183 -0.3484 17 9 5.0149 1.3772 -1.2056 18 9 3.6664 -0.4430 -0.9097 19 6 5.9313 -0.5636 -0.1477 20 8 5.6676 -1.5772 0.8243 21 6 6.3699 -1.2004 -1.4898 22 6 7.8681 -1.5104 -1.2475 23 6 8.3737 -0.3104 -0.4204 24 6 7.1423 0.2916 0.2788 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0991 1.3603 3.2259 32 1 1.7302 3.9746 5.4292 33 1 4.9681 -2.1943 0.5692 34 1 5.8122 -2.1168 -1.6831 35 1 6.2496 -0.4933 -2.3106 36 1 8.4028 -1.5729 -2.1953 37 1 7.9797 -2.4366 -0.6837 38 1 8.8294 0.4304 -1.0774 39 1 9.0973 -0.6472 0.3219 40 1 7.0005 1.3246 -0.0388 41 1 7.2683 0.2471 1.3606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293970350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:59 Heat of formation + Delta-G solvation = -155.454076 kcal Electronic energy + Delta-G solvation = -27091.934198 eV Core-core repulsion = 23029.581572 eV Total energy + Delta-G solvation = -4062.352625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.143 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.20475 -47.11896 -39.46314 -38.50150 -35.80972 -34.87287 -33.24719 -32.14850 -29.84975 -28.84825 -27.92474 -26.06718 -25.03886 -22.81657 -21.00513 -20.45875 -20.08420 -18.94421 -18.04074 -17.54808 -17.22161 -16.50348 -16.08964 -15.63035 -15.39078 -14.76086 -14.65051 -14.43512 -14.09994 -13.78541 -13.68828 -13.54212 -13.36175 -12.95205 -12.74730 -12.58411 -12.31335 -12.10166 -11.69264 -11.62038 -11.39333 -11.34432 -11.20727 -11.04800 -10.91300 -10.73920 -10.65725 -10.49661 -10.23128 -10.21296 -9.71345 -9.17100 -9.05528 -8.48184 -7.87434 -6.09374 -4.14792 2.45545 2.86338 3.22965 3.28248 3.34963 3.40386 3.67275 3.99288 4.15423 4.28289 4.42427 4.48082 4.73266 4.91206 5.03280 5.23753 5.25361 5.33406 5.38152 5.44546 5.48905 5.59226 5.60851 5.66414 5.84197 5.90501 6.02153 6.08169 6.19257 6.24269 6.42279 6.82533 6.84314 6.99147 7.30285 7.38491 7.50434 7.85434 8.11185 8.14871 8.59201 8.89815 9.50284 10.98874 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.005503 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.514583 B = 5087.273100 C = 6114.796341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.129 3.871 4 N -0.574 5.574 5 C 0.247 3.753 6 C -0.531 4.531 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.273 1.273 14 C 0.480 3.520 15 O -0.486 6.486 16 C 0.250 3.750 17 F -0.180 7.180 18 F -0.188 7.188 19 C 0.115 3.885 20 O -0.519 6.519 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.374 0.626 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -10.340 -13.830 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.181 4.181 3 C 0.006 3.994 4 N -0.304 5.304 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.727 3.273 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.260 3.740 15 O -0.360 6.360 16 C 0.210 3.790 17 F -0.161 7.161 18 F -0.169 7.169 19 C 0.071 3.929 20 O -0.323 6.323 21 C -0.188 4.188 22 C -0.153 4.153 23 C -0.160 4.160 24 C -0.143 4.143 25 H 0.113 0.887 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.024 -9.938 -12.799 17.288 hybrid contribution -0.681 0.799 -0.486 1.157 sum 5.343 -9.139 -13.285 16.987 Atomic orbital electron populations 1.23823 0.95816 1.01722 1.00958 1.23506 0.96195 0.98938 0.99431 1.20780 0.93273 0.96003 0.89386 1.48292 1.09664 1.58142 1.14314 1.19423 0.95808 0.94006 0.77921 1.21392 1.41050 0.93017 1.01497 0.92319 1.24919 0.94889 0.98883 0.95203 1.69930 1.41738 1.36259 1.05172 0.86476 0.78698 0.84758 0.77407 1.20553 1.21002 1.19813 1.20210 0.84173 0.81199 0.88393 1.90750 1.51959 1.54189 1.39092 1.22602 0.87657 0.82219 0.86554 1.93014 1.93024 1.57975 1.72119 1.93003 1.60581 1.76369 1.86937 1.22673 0.91623 0.88395 0.90166 1.86753 1.59375 1.42140 1.44054 1.23200 0.97878 1.01375 0.96332 1.22267 0.94220 0.98877 0.99919 1.22153 0.97594 0.97325 0.98920 1.22142 0.90591 0.97951 1.03608 0.88680 0.88389 0.87096 0.89099 0.90661 0.94399 0.93504 0.92601 0.77856 0.90391 0.89870 0.91356 0.91028 0.91545 0.91282 0.89942 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.53 14.32 29.01 0.42 -2.11 16 2 C -0.16 -2.48 8.73 -36.02 -0.31 -2.79 16 3 C 0.13 2.29 5.39 -5.19 -0.03 2.26 16 4 N -0.57 -12.47 2.44 -176.43 -0.43 -12.90 16 5 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 6 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 7 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 10 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.48 10.16 6.77 -10.98 -0.07 10.09 16 15 O -0.49 -11.85 13.71 -7.76 -0.11 -11.95 16 16 C 0.25 4.15 0.79 -27.88 -0.02 4.13 16 17 F -0.18 -3.03 14.93 2.25 0.03 -3.00 16 18 F -0.19 -2.76 11.73 2.25 0.03 -2.73 16 19 C 0.11 1.66 0.39 -88.96 -0.03 1.62 16 20 O -0.52 -7.69 12.15 -48.55 -0.59 -8.28 16 21 C -0.15 -1.66 5.72 -24.74 -0.14 -1.80 16 22 C -0.12 -1.14 6.81 -25.07 -0.17 -1.31 16 23 C -0.12 -1.38 6.80 -25.61 -0.17 -1.56 16 24 C -0.11 -1.58 4.85 -25.61 -0.12 -1.71 16 25 H 0.09 1.11 8.06 -52.48 -0.42 0.68 16 26 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.11 1.63 6.60 -52.49 -0.35 1.29 16 28 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 29 H 0.08 1.24 5.82 -51.93 -0.30 0.94 16 30 H 0.04 1.01 8.07 -51.93 -0.42 0.59 16 31 H 0.05 1.37 7.42 -51.92 -0.39 0.98 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.37 4.15 9.00 45.56 0.41 4.56 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.91 7.66 -51.92 -0.40 0.51 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.30 7.05 -51.93 -0.37 0.93 16 41 H 0.10 1.70 7.39 -51.93 -0.38 1.32 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -31.84 339.13 -6.44 -38.28 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.08 Total: 4.67 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.12 Total: -0.38 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.31 Total: -38.48 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.70 Total: -20.23 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.06 Total: -5.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.84 -6.44 -38.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293970350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.175 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds