Wall clock time and date at job start Tue Mar 31 2020 08:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99961 * 2 1 4 4 N 1.46492 * 109.47121 * 125.00333 * 3 2 1 5 5 C 1.46507 * 119.99809 * 269.99924 * 4 3 2 6 6 C 1.50693 * 109.47077 * 269.99933 * 5 4 3 7 7 H 1.08004 * 120.00096 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00301 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99854 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00263 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46675 * 90.00640 * 10 8 6 12 12 H 1.48504 * 109.47072 * 210.00267 * 10 8 6 13 13 H 1.48487 * 109.47276 * 330.00562 * 10 8 6 14 14 C 1.34774 * 120.00363 * 89.99528 * 4 3 2 15 15 O 1.21283 * 120.00082 * 179.97438 * 14 4 3 16 16 C 1.50704 * 119.99995 * 0.02562 * 14 4 3 17 17 F 1.39896 * 109.47271 * 79.49218 * 16 14 4 18 18 F 1.39901 * 109.46795 * 319.49532 * 16 14 4 19 19 C 1.52999 * 109.46989 * 199.50061 * 16 14 4 20 20 O 1.42893 * 110.43957 * 54.42617 * 19 16 14 21 21 C 1.54887 * 110.59772 * 177.04683 * 19 16 14 22 22 C 1.54890 * 102.74922 * 156.67291 * 21 19 16 23 23 C 1.54265 * 104.19293 * 322.05529 * 22 21 19 24 24 C 1.53872 * 106.60197 * 23.61134 * 23 22 21 25 25 H 1.08005 * 119.99879 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.99916 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00414 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46858 * 4.99832 * 3 2 1 29 29 H 1.08998 * 109.46895 * 245.00358 * 3 2 1 30 30 H 1.08998 * 109.46988 * 30.00039 * 5 4 3 31 31 H 1.09008 * 109.46951 * 150.00003 * 5 4 3 32 32 H 0.96999 * 120.00276 * 179.97438 * 9 8 6 33 33 H 0.96705 * 113.99961 * 62.72335 * 20 19 16 34 34 H 1.08999 * 110.75710 * 274.98700 * 21 19 16 35 35 H 1.09009 * 110.75902 * 38.35524 * 21 19 16 36 36 H 1.09004 * 110.48573 * 203.37740 * 22 21 19 37 37 H 1.08999 * 110.48728 * 80.73512 * 22 21 19 38 38 H 1.08999 * 110.03225 * 264.32110 * 23 22 21 39 39 H 1.09003 * 110.02569 * 142.89862 * 23 22 21 40 40 H 1.08996 * 110.03093 * 240.71506 * 24 23 22 41 41 H 1.09002 * 110.03255 * 119.27995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8650 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6367 8 6 2.5185 4.0667 3.6081 9 7 1.9591 3.4660 4.6356 10 14 2.8729 5.8995 3.6773 11 1 1.7006 6.6502 3.1600 12 1 3.1363 6.3001 5.0828 13 1 4.0634 6.2052 2.8441 14 6 4.2497 0.8662 0.9823 15 8 5.0200 0.8888 1.9189 16 6 4.6972 0.3183 -0.3484 17 9 5.0149 1.3772 -1.2056 18 9 3.6664 -0.4430 -0.9097 19 6 5.9313 -0.5636 -0.1477 20 8 5.6676 -1.5772 0.8243 21 6 6.3699 -1.2004 -1.4898 22 6 7.8681 -1.5104 -1.2475 23 6 8.3737 -0.3104 -0.4204 24 6 7.1423 0.2916 0.2788 25 1 -0.5400 -0.9354 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8501 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6212 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0991 1.3603 3.2259 32 1 1.7302 3.9746 5.4292 33 1 4.9681 -2.1943 0.5692 34 1 5.8122 -2.1168 -1.6831 35 1 6.2496 -0.4933 -2.3106 36 1 8.4028 -1.5729 -2.1953 37 1 7.9797 -2.4366 -0.6837 38 1 8.8294 0.4304 -1.0774 39 1 9.0973 -0.6472 0.3219 40 1 7.0005 1.3246 -0.0388 41 1 7.2683 0.2471 1.3606 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293970350.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:59 Heat of formation + Delta-G solvation = -175.943786 kcal Electronic energy + Delta-G solvation = -27092.822698 eV Core-core repulsion = 23029.581572 eV Total energy + Delta-G solvation = -4063.241126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.54056 -48.44411 -40.95507 -39.80156 -37.41789 -35.92855 -35.17039 -33.81501 -31.18739 -29.81464 -29.76020 -27.41431 -26.68121 -24.64253 -22.08268 -21.74618 -21.26693 -20.31836 -19.34603 -18.99981 -18.69795 -18.56148 -17.47177 -16.89800 -16.55458 -16.46398 -16.07789 -16.00320 -15.40014 -15.27570 -14.93265 -14.90844 -14.73351 -14.33819 -14.28758 -13.85289 -13.81891 -13.44096 -13.40426 -13.06271 -12.94048 -12.65909 -12.61808 -12.32015 -12.30867 -12.22402 -12.11691 -11.84477 -11.74344 -11.51883 -11.29702 -10.69249 -10.64754 -10.38337 -9.69966 -8.28122 -6.43240 1.15047 1.25577 1.35496 1.37582 1.48564 1.75886 2.33166 2.38079 2.70455 2.92956 3.02612 3.09375 3.39978 3.51463 3.79532 3.97077 4.10130 4.16119 4.29902 4.35926 4.41572 4.50180 4.69845 4.71911 4.81432 4.85486 4.97631 5.01114 5.04663 5.10321 5.20089 5.21100 5.35234 5.43813 5.65516 5.67745 5.85641 5.96428 6.34428 6.55328 6.63199 6.92155 7.27538 8.79706 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.005503 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.514583 B = 5087.273100 C = 6114.796341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.184 4.184 3 C 0.127 3.873 4 N -0.581 5.581 5 C 0.265 3.735 6 C -0.549 4.549 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.967 3.033 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.468 3.532 15 O -0.529 6.529 16 C 0.266 3.734 17 F -0.180 7.180 18 F -0.172 7.172 19 C 0.113 3.887 20 O -0.536 6.536 21 C -0.141 4.141 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.112 4.112 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.005 0.995 32 H 0.269 0.731 33 H 0.389 0.611 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -10.891 -16.112 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.203 4.203 3 C 0.005 3.995 4 N -0.311 5.311 5 C 0.144 3.856 6 C -0.588 4.588 7 H 0.069 0.931 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.791 3.209 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.199 1.199 14 C 0.250 3.750 15 O -0.405 6.405 16 C 0.225 3.775 17 F -0.161 7.161 18 F -0.153 7.153 19 C 0.070 3.930 20 O -0.343 6.343 21 C -0.179 4.179 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.150 4.150 25 H 0.140 0.860 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.023 0.977 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.029 -10.512 -15.129 19.384 hybrid contribution -0.783 0.963 0.269 1.270 sum 5.246 -9.549 -14.860 18.427 Atomic orbital electron populations 1.24093 0.95240 1.03138 0.97715 1.23369 0.96785 0.97798 1.02321 1.20962 0.92831 0.97481 0.88194 1.48310 1.10934 1.57941 1.13926 1.18854 0.94432 0.92959 0.79319 1.21620 1.41381 0.94117 1.01654 0.93061 1.25811 0.94377 1.03766 0.94644 1.70039 1.42301 1.38189 1.05738 0.85421 0.78904 0.78944 0.77607 1.18699 1.20316 1.19885 1.21066 0.83393 0.80435 0.90086 1.90723 1.52982 1.55637 1.41181 1.22292 0.88791 0.82421 0.83985 1.93015 1.93046 1.58343 1.71692 1.93033 1.60181 1.75730 1.86377 1.22827 0.89889 0.88082 0.92192 1.86729 1.60103 1.42439 1.44981 1.23225 0.98821 1.02057 0.93774 1.22285 0.93410 0.98005 1.00917 1.22160 0.95860 0.98343 0.99247 1.22152 0.93133 0.97861 1.01867 0.85962 0.88221 0.86353 0.89761 0.89447 0.95321 0.97676 0.92186 0.76119 0.88175 0.89293 0.88602 0.90679 0.90024 0.90919 0.91547 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 14.32 67.78 0.97 -3.17 16 2 C -0.18 -5.43 8.73 25.65 0.22 -5.20 16 3 C 0.13 4.51 5.39 85.64 0.46 4.97 16 4 N -0.58 -26.11 2.44 -830.50 -2.03 -28.14 16 5 C 0.26 14.52 5.16 85.63 0.44 14.97 16 6 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.80 5.46 84.65 0.46 1.26 16 9 N -0.92 -55.66 13.29 21.45 0.28 -55.38 16 10 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 14 C 0.47 20.51 6.77 87.66 0.59 21.10 16 15 O -0.53 -27.30 13.71 9.70 0.13 -27.17 16 16 C 0.27 8.72 0.79 29.85 0.02 8.74 16 17 F -0.18 -5.94 14.93 44.97 0.67 -5.27 16 18 F -0.17 -4.79 11.73 44.97 0.53 -4.26 16 19 C 0.11 3.20 0.39 -9.72 0.00 3.20 16 20 O -0.54 -15.76 12.15 -136.25 -1.66 -17.41 16 21 C -0.14 -2.70 5.72 31.88 0.18 -2.52 16 22 C -0.11 -1.81 6.81 31.67 0.22 -1.60 16 23 C -0.12 -2.50 6.80 31.32 0.21 -2.29 16 24 C -0.11 -3.44 4.85 31.32 0.15 -3.28 16 25 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 26 H 0.10 2.48 7.84 -2.91 -0.02 2.46 16 27 H 0.12 3.30 6.60 -2.91 -0.02 3.28 16 28 H 0.08 3.05 7.72 -2.39 -0.02 3.03 16 29 H 0.09 2.83 5.82 -2.39 -0.01 2.81 16 30 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.01 0.32 7.42 -2.38 -0.02 0.30 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.39 8.22 9.00 -74.05 -0.67 7.55 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.64 7.66 -2.38 -0.02 1.62 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 2.17 7.05 -2.39 -0.02 2.16 16 41 H 0.06 2.34 7.39 -2.39 -0.02 2.32 16 Total: -1.00 -71.72 339.13 4.51 -67.20 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.38 Total: 19.00 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 4.18 Total: 4.34 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.74 Total: -83.52 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.52 Total: -44.58 kcal Atomic # 9 Polarization: -10.73 SS G_CDS: 1.20 Total: -9.53 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.72 4.51 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293970350.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.741 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds