Wall clock time and date at job start Tue Mar 31 2020 08:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.21092 * 2 1 4 4 C 1.52985 * 109.22137 * 240.61899 * 2 1 3 5 5 N 1.47268 * 108.18498 * 286.43757 * 4 2 1 6 6 C 1.34783 * 121.35499 * 118.51685 * 5 4 2 7 7 O 1.21587 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.39237 * 119.99964 * 175.71220 * 8 6 5 10 10 C 1.39483 * 119.82972 * 215.12175 * 9 8 6 11 11 C 1.36386 * 120.16674 * 179.76156 * 10 9 8 12 12 C 1.40869 * 119.82075 * 0.49653 * 11 10 9 13 13 C 1.41163 * 120.15743 * 179.74268 * 12 11 10 14 14 H 1.08004 * 119.99788 * 214.72972 * 13 12 11 15 15 C 1.39892 * 120.00424 * 34.72121 * 13 12 11 16 16 N 1.30885 * 119.99744 * 355.75768 * 15 13 12 17 17 Si 1.86799 * 120.00106 * 175.74784 * 15 13 12 18 18 H 1.48503 * 109.46829 * 60.00901 * 17 15 13 19 19 H 1.48504 * 109.46880 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47401 * 300.00399 * 17 15 13 21 21 C 1.40864 * 119.67955 * 359.75863 * 12 11 10 22 22 C 1.36373 * 119.82847 * 0.02562 * 21 12 11 23 23 C 1.47044 * 117.29500 * 298.49455 * 5 4 2 24 24 C 1.50432 * 108.89085 * 42.73755 * 23 5 4 25 25 O 1.21282 * 118.49033 * 167.27287 * 24 23 5 26 26 N 1.33387 * 123.02301 * 347.29274 * 24 23 5 27 27 H 1.08996 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47185 * 300.00290 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.00276 * 1 2 3 30 30 H 1.09002 * 109.72056 * 46.10533 * 4 2 1 31 31 H 1.08991 * 109.72354 * 166.72197 * 4 2 1 32 32 H 0.97003 * 119.99519 * 355.71799 * 8 6 5 33 33 H 1.07995 * 119.92314 * 0.02562 * 10 9 8 34 34 H 1.07991 * 120.08572 * 180.25256 * 11 10 9 35 35 H 0.96996 * 120.00034 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.08368 * 180.02562 * 21 12 11 37 37 H 1.07997 * 119.91909 * 179.97438 * 22 21 12 38 38 H 1.09006 * 109.57318 * 162.56201 * 23 5 4 39 39 H 1.09005 * 109.56653 * 282.79501 * 23 5 4 40 40 H 0.96996 * 117.70391 * 184.31912 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0294 0.0000 4 6 2.0337 -0.7087 -1.2588 5 7 1.8111 -2.1549 -1.0921 6 6 1.0069 -2.8416 -1.9278 7 8 0.4473 -2.2673 -2.8417 8 7 0.8230 -4.1649 -1.7503 9 6 -0.0761 -4.8572 -2.5572 10 6 -0.8211 -5.9083 -2.0226 11 6 -1.7073 -6.5879 -2.8055 12 6 -1.8614 -6.2326 -4.1599 13 6 -2.7726 -6.9347 -4.9780 14 1 -2.5453 -7.1003 -6.0208 15 6 -3.9700 -7.4163 -4.4381 16 7 -4.2082 -7.2891 -3.1574 17 14 -5.2288 -8.2405 -5.5450 18 1 -4.6189 -9.4334 -6.1856 19 1 -6.4017 -8.6582 -4.7355 20 1 -5.6669 -7.2850 -6.5938 21 6 -1.1016 -5.1734 -4.6939 22 6 -0.2227 -4.5003 -3.8976 23 6 2.5024 -2.8195 0.0227 24 6 2.4090 -1.9459 1.2438 25 8 2.7114 -2.4196 2.3185 26 7 2.0085 -0.6743 1.1990 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4830 -0.3497 -2.1283 31 1 3.0976 -0.5125 -1.3906 32 1 1.3170 -4.6350 -1.0604 33 1 -0.6990 -6.1819 -0.9850 34 1 -2.2863 -7.3988 -2.3891 35 1 -5.0386 -7.6226 -2.7831 36 1 -1.2148 -4.8952 -5.7313 37 1 0.3609 -3.6883 -4.3056 38 1 2.0296 -3.7807 0.2245 39 1 3.5493 -2.9752 -0.2378 40 1 2.0381 -0.1630 2.0227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296255724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:56 Heat of formation + Delta-G solvation = -25.155156 kcal Electronic energy + Delta-G solvation = -24444.492578 eV Core-core repulsion = 20838.479324 eV Total energy + Delta-G solvation = -3606.013254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04912 -39.54849 -37.68703 -36.77228 -34.70691 -34.42069 -32.82893 -31.35549 -29.58051 -28.92563 -28.08834 -26.73576 -24.66615 -22.99618 -21.67916 -20.94402 -20.14840 -19.09299 -18.38930 -17.45091 -17.25345 -16.89942 -16.13924 -15.93611 -15.17452 -15.09660 -14.77467 -14.38712 -14.14499 -13.93701 -13.66409 -13.19568 -12.79985 -12.68325 -12.56600 -12.22590 -12.08959 -11.77889 -11.72890 -11.57894 -11.32622 -11.13496 -11.02643 -10.74988 -10.55364 -10.10133 -9.56927 -9.48261 -9.48106 -9.24275 -8.92624 -8.78099 -7.53906 -6.85152 -6.60374 -4.33111 2.26570 2.44363 2.69362 2.97689 3.09397 3.10521 3.12150 3.15328 3.54636 3.98814 4.05353 4.13378 4.37537 4.68410 4.69785 4.75710 4.88333 5.05403 5.33641 5.43759 5.53155 5.58816 5.65536 6.00798 6.07413 6.19917 6.39162 6.45790 6.71376 6.73865 6.96989 7.00783 7.11167 7.22882 7.34212 7.65326 7.80080 7.85551 7.92930 8.08456 8.29141 8.35104 8.64247 8.84692 8.94184 9.02805 10.30787 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.003103 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.087235 B = 9022.009433 C = 9220.605462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.122 3.878 3 H 0.097 0.903 4 C 0.120 3.880 5 N -0.638 5.638 6 C 0.704 3.296 7 O -0.567 6.567 8 N -0.664 5.664 9 C 0.018 3.982 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.100 3.900 13 C -0.462 4.462 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.812 5.812 17 Si 0.915 3.085 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.266 1.266 21 C -0.205 4.205 22 C -0.084 4.084 23 C 0.099 3.901 24 C 0.516 3.484 25 O -0.550 6.550 26 N -0.710 5.710 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 11.546 6.662 17.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.115 0.885 4 C -0.004 4.004 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.443 6.443 8 N -0.311 5.311 9 C -0.074 4.074 10 C -0.142 4.142 11 C -0.160 4.160 12 C 0.097 3.903 13 C -0.493 4.493 14 H 0.093 0.907 15 C -0.145 4.145 16 N -0.440 5.440 17 Si 0.740 3.260 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.191 1.191 21 C -0.225 4.225 22 C -0.104 4.104 23 C -0.028 4.028 24 C 0.302 3.698 25 O -0.428 6.428 26 N -0.362 5.362 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.226 0.774 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.420 11.511 6.489 16.828 hybrid contribution -0.478 -0.253 0.368 0.654 sum 9.942 11.258 6.857 16.511 Atomic orbital electron populations 1.22228 0.94144 1.03437 1.02513 1.21443 0.95500 0.96611 0.84897 0.88468 1.21828 1.01537 0.79005 0.98065 1.47342 1.50650 1.08896 1.31060 1.15813 0.79460 0.81893 0.82186 1.90916 1.51989 1.68611 1.32833 1.42266 1.44568 1.06051 1.38189 1.17070 0.99905 1.00266 0.90197 1.20297 0.97913 0.98114 0.97861 1.21175 0.98188 1.01570 0.95088 1.17713 0.90237 0.89723 0.92602 1.19465 1.01707 1.30938 0.97193 0.90667 1.25868 0.99323 0.93995 0.95317 1.69756 1.24689 1.37307 1.12226 0.86254 0.79390 0.79947 0.80368 1.19073 1.20463 1.19124 1.20799 1.03475 0.99195 0.99012 1.20395 0.99279 0.99134 0.91641 1.21748 1.00257 0.96762 0.84002 1.20278 0.76205 0.82552 0.90757 1.90806 1.50162 1.72116 1.29701 1.45476 1.65516 1.12145 1.13047 0.91923 0.92326 0.90755 0.86578 0.90602 0.77396 0.89168 0.85036 0.91117 0.88612 0.87358 0.86915 0.87791 0.76576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.37 37.16 0.35 -1.20 16 2 C 0.12 0.91 3.87 -68.40 -0.26 0.65 16 3 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.12 1.10 5.89 -3.63 -0.02 1.07 16 5 N -0.64 -7.65 2.74 -179.89 -0.49 -8.14 16 6 C 0.70 11.83 8.17 -86.91 -0.71 11.12 16 7 O -0.57 -11.60 13.25 5.29 0.07 -11.53 16 8 N -0.66 -11.49 5.19 -14.10 -0.07 -11.57 16 9 C 0.02 0.39 6.30 -83.57 -0.53 -0.13 16 10 C -0.12 -2.75 9.90 -39.79 -0.39 -3.15 16 11 C -0.14 -3.59 8.61 -39.25 -0.34 -3.92 16 12 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 13 C -0.46 -12.30 9.03 -37.85 -0.34 -12.64 16 14 H 0.08 1.92 7.85 -52.48 -0.41 1.50 16 15 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.15 10.60 55.55 0.59 -20.56 16 17 Si 0.92 19.00 29.56 -169.99 -5.03 13.98 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 21 C -0.20 -5.13 9.74 -39.26 -0.38 -5.52 16 22 C -0.08 -1.99 8.61 -39.79 -0.34 -2.33 16 23 C 0.10 1.00 6.41 -5.03 -0.03 0.97 16 24 C 0.52 5.79 7.84 -11.73 -0.09 5.70 16 25 O -0.55 -8.09 17.80 5.56 0.10 -7.99 16 26 N -0.71 -6.15 5.00 -54.79 -0.27 -6.42 16 27 H 0.06 0.81 7.98 -51.93 -0.41 0.39 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.12 1.21 6.99 -51.93 -0.36 0.85 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.39 5.47 6.50 -40.82 -0.27 5.20 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.13 3.49 6.13 -52.49 -0.32 3.17 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 37 H 0.11 2.51 6.23 -52.49 -0.33 2.19 16 38 H 0.11 1.13 6.00 -51.93 -0.31 0.82 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 2.94 8.80 -40.82 -0.36 2.59 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -32.40 331.76 -8.76 -41.16 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -4.87 Total: 11.72 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.78 Total: -5.65 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.25 Total: -46.69 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: 0.17 Total: -19.52 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.40 -8.76 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296255724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.000 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds