Wall clock time and date at job start Tue Mar 31 2020 08:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.21092 * 2 1 4 4 C 1.52985 * 109.22137 * 240.61899 * 2 1 3 5 5 N 1.47268 * 108.18498 * 286.43757 * 4 2 1 6 6 C 1.34783 * 121.35499 * 118.51685 * 5 4 2 7 7 O 1.21587 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00327 * 179.97438 * 6 5 4 9 9 C 1.39237 * 119.99964 * 175.71220 * 8 6 5 10 10 C 1.39483 * 119.82972 * 215.12175 * 9 8 6 11 11 C 1.36386 * 120.16674 * 179.76156 * 10 9 8 12 12 C 1.40869 * 119.82075 * 0.49653 * 11 10 9 13 13 C 1.41163 * 120.15743 * 179.74268 * 12 11 10 14 14 H 1.08004 * 119.99788 * 214.72972 * 13 12 11 15 15 C 1.39892 * 120.00424 * 34.72121 * 13 12 11 16 16 N 1.30885 * 119.99744 * 355.75768 * 15 13 12 17 17 Si 1.86799 * 120.00106 * 175.74784 * 15 13 12 18 18 H 1.48503 * 109.46829 * 60.00901 * 17 15 13 19 19 H 1.48504 * 109.46880 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47401 * 300.00399 * 17 15 13 21 21 C 1.40864 * 119.67955 * 359.75863 * 12 11 10 22 22 C 1.36373 * 119.82847 * 0.02562 * 21 12 11 23 23 C 1.47044 * 117.29500 * 298.49455 * 5 4 2 24 24 C 1.50432 * 108.89085 * 42.73755 * 23 5 4 25 25 O 1.21282 * 118.49033 * 167.27287 * 24 23 5 26 26 N 1.33387 * 123.02301 * 347.29274 * 24 23 5 27 27 H 1.08996 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47185 * 300.00290 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.00276 * 1 2 3 30 30 H 1.09002 * 109.72056 * 46.10533 * 4 2 1 31 31 H 1.08991 * 109.72354 * 166.72197 * 4 2 1 32 32 H 0.97003 * 119.99519 * 355.71799 * 8 6 5 33 33 H 1.07995 * 119.92314 * 0.02562 * 10 9 8 34 34 H 1.07991 * 120.08572 * 180.25256 * 11 10 9 35 35 H 0.96996 * 120.00034 * 179.97438 * 16 15 13 36 36 H 1.08001 * 120.08368 * 180.02562 * 21 12 11 37 37 H 1.07997 * 119.91909 * 179.97438 * 22 21 12 38 38 H 1.09006 * 109.57318 * 162.56201 * 23 5 4 39 39 H 1.09005 * 109.56653 * 282.79501 * 23 5 4 40 40 H 0.96996 * 117.70391 * 184.31912 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8887 1.0294 0.0000 4 6 2.0337 -0.7087 -1.2588 5 7 1.8111 -2.1549 -1.0921 6 6 1.0069 -2.8416 -1.9278 7 8 0.4473 -2.2673 -2.8417 8 7 0.8230 -4.1649 -1.7503 9 6 -0.0761 -4.8572 -2.5572 10 6 -0.8211 -5.9083 -2.0226 11 6 -1.7073 -6.5879 -2.8055 12 6 -1.8614 -6.2326 -4.1599 13 6 -2.7726 -6.9347 -4.9780 14 1 -2.5453 -7.1003 -6.0208 15 6 -3.9700 -7.4163 -4.4381 16 7 -4.2082 -7.2891 -3.1574 17 14 -5.2288 -8.2405 -5.5450 18 1 -4.6189 -9.4334 -6.1856 19 1 -6.4017 -8.6582 -4.7355 20 1 -5.6669 -7.2850 -6.5938 21 6 -1.1016 -5.1734 -4.6939 22 6 -0.2227 -4.5003 -3.8976 23 6 2.5024 -2.8195 0.0227 24 6 2.4090 -1.9459 1.2438 25 8 2.7114 -2.4196 2.3185 26 7 2.0085 -0.6743 1.1990 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.4830 -0.3497 -2.1283 31 1 3.0976 -0.5125 -1.3906 32 1 1.3170 -4.6350 -1.0604 33 1 -0.6990 -6.1819 -0.9850 34 1 -2.2863 -7.3988 -2.3891 35 1 -5.0386 -7.6226 -2.7831 36 1 -1.2148 -4.8952 -5.7313 37 1 0.3609 -3.6883 -4.3056 38 1 2.0296 -3.7807 0.2245 39 1 3.5493 -2.9752 -0.2378 40 1 2.0381 -0.1630 2.0227 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296255724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:55 Heat of formation + Delta-G solvation = -47.199961 kcal Electronic energy + Delta-G solvation = -24445.448513 eV Core-core repulsion = 20838.479324 eV Total energy + Delta-G solvation = -3606.969188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.10220 -40.79053 -39.26480 -37.89258 -36.18944 -35.69538 -34.51194 -32.19614 -31.45292 -30.72261 -28.95119 -27.90279 -26.31393 -23.86790 -23.34355 -22.65103 -21.55277 -19.94884 -19.69899 -19.18441 -18.53830 -17.86803 -17.32832 -17.09151 -16.90853 -16.24660 -15.91695 -15.68694 -15.43656 -15.12777 -14.83515 -14.57196 -14.48513 -14.01482 -13.72972 -13.54255 -13.47561 -13.20781 -13.03998 -12.87104 -12.75105 -12.54201 -12.41199 -12.35234 -11.85415 -11.54372 -11.38567 -11.21749 -10.94857 -10.65309 -10.26704 -9.80319 -9.44611 -8.68780 -8.48215 -6.30837 0.85343 1.16371 1.38741 1.40649 1.42590 1.51292 1.53593 2.06614 2.24065 2.26780 2.81622 2.85337 3.33400 3.62837 3.70512 3.94042 3.98945 4.23664 4.34097 4.39221 4.51353 4.59811 4.72692 4.79281 4.83907 4.93822 5.08418 5.15541 5.20465 5.27629 5.36674 5.43438 5.61756 5.73992 5.76629 6.01231 6.06811 6.17848 6.18524 6.41392 6.70178 6.87530 6.99148 7.02994 7.05788 7.53801 8.44250 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027991 B = 0.003103 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.087235 B = 9022.009433 C = 9220.605462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 H 0.143 0.857 4 C 0.111 3.889 5 N -0.627 5.627 6 C 0.704 3.296 7 O -0.607 6.607 8 N -0.661 5.661 9 C 0.039 3.961 10 C -0.122 4.122 11 C -0.158 4.158 12 C 0.067 3.933 13 C -0.499 4.499 14 H 0.073 0.927 15 C 0.028 3.972 16 N -0.843 5.843 17 Si 0.987 3.013 18 H -0.258 1.258 19 H -0.269 1.269 20 H -0.265 1.265 21 C -0.218 4.218 22 C -0.093 4.093 23 C 0.097 3.903 24 C 0.517 3.483 25 O -0.589 6.589 26 N -0.699 5.699 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.284 0.716 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.135 0.865 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 12.899 7.532 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.024 3.976 3 H 0.161 0.839 4 C -0.012 4.012 5 N -0.366 5.366 6 C 0.406 3.594 7 O -0.486 6.486 8 N -0.310 5.310 9 C -0.055 4.055 10 C -0.142 4.142 11 C -0.178 4.178 12 C 0.065 3.935 13 C -0.530 4.530 14 H 0.091 0.909 15 C -0.184 4.184 16 N -0.471 5.471 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.194 1.194 20 H -0.190 1.190 21 C -0.238 4.238 22 C -0.113 4.113 23 C -0.028 4.028 24 C 0.303 3.697 25 O -0.470 6.470 26 N -0.349 5.349 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.247 0.753 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.152 0.848 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 11.672 12.921 7.405 18.922 hybrid contribution -0.714 -0.499 0.200 0.894 sum 10.958 12.422 7.606 18.227 Atomic orbital electron populations 1.22219 0.95685 1.00995 1.03291 1.21551 0.94055 0.98436 0.83535 0.83940 1.22165 1.03482 0.77034 0.98470 1.47275 1.49128 1.09978 1.30248 1.15905 0.79630 0.81541 0.82294 1.90894 1.53639 1.69293 1.34761 1.42081 1.44153 1.06609 1.38156 1.17074 0.99118 0.99296 0.90031 1.20511 0.96954 0.97824 0.98943 1.21137 0.99295 1.02083 0.95263 1.18013 0.91239 0.90754 0.93495 1.19711 1.03082 1.32857 0.97386 0.90858 1.26721 1.00749 0.94150 0.96749 1.69831 1.25482 1.38060 1.13708 0.85168 0.76777 0.78887 0.78308 1.18255 1.19382 1.18951 1.20932 1.04005 0.99357 0.99478 1.20509 0.99268 0.99095 0.92448 1.21939 1.01693 0.96377 0.82837 1.20371 0.75882 0.83165 0.90307 1.90801 1.52254 1.73006 1.30902 1.45439 1.64095 1.11495 1.13918 0.95855 0.90892 0.90753 0.87834 0.87306 0.75251 0.86285 0.86491 0.90572 0.88459 0.87008 0.86894 0.84752 0.75529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.37 71.98 0.67 -2.09 16 2 C 0.13 1.50 3.87 45.15 0.17 1.67 16 3 H 0.14 0.54 8.14 -2.38 -0.02 0.52 16 4 C 0.11 1.69 5.89 86.23 0.51 2.20 16 5 N -0.63 -13.55 2.74 -841.32 -2.30 -15.85 16 6 C 0.70 22.74 8.17 179.05 1.46 24.20 16 7 O -0.61 -24.57 13.25 -3.99 -0.05 -24.62 16 8 N -0.66 -21.98 5.19 -316.78 -1.64 -23.63 16 9 C 0.04 1.68 6.30 38.57 0.24 1.93 16 10 C -0.12 -5.52 9.90 22.14 0.22 -5.30 16 11 C -0.16 -8.29 8.61 22.48 0.19 -8.10 16 12 C 0.07 3.73 5.55 -21.27 -0.12 3.61 16 13 C -0.50 -27.58 9.03 23.39 0.21 -27.36 16 14 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 15 C 0.03 1.45 5.42 85.23 0.46 1.91 16 16 N -0.84 -44.95 10.60 21.82 0.23 -44.72 16 17 Si 0.99 39.40 29.56 68.60 2.03 41.43 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 21 C -0.22 -11.28 9.74 22.48 0.22 -11.06 16 22 C -0.09 -4.43 8.61 22.13 0.19 -4.24 16 23 C 0.10 1.69 6.41 85.45 0.55 2.24 16 24 C 0.52 10.28 7.84 87.79 0.69 10.97 16 25 O -0.59 -16.29 17.80 -3.04 -0.05 -16.34 16 26 N -0.70 -9.90 5.00 -446.41 -2.23 -12.13 16 27 H 0.02 0.57 7.98 -2.39 -0.02 0.55 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.95 6.99 -2.39 -0.02 1.93 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.41 10.58 6.50 -92.71 -0.60 9.98 16 33 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.12 6.44 6.13 -2.92 -0.02 6.42 16 35 H 0.28 13.82 8.30 -92.71 -0.77 13.05 16 36 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.11 5.23 6.23 -2.91 -0.02 5.21 16 38 H 0.11 2.00 6.00 -2.38 -0.01 1.98 16 39 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.41 4.71 8.80 -92.71 -0.82 3.90 16 Total: -1.00 -73.33 331.76 1.33 -72.00 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.32 Total: 33.29 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.68 Total: -9.43 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -5.95 Total: -96.33 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.11 Total: -40.96 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -73.33 1.33 -72.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296255724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.802 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds