Wall clock time and date at job start Tue Mar 31 2020 08:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 N 1.46502 * 109.47067 * 184.87812 * 3 2 1 5 5 C 1.36904 * 120.00230 * 263.78384 * 4 3 2 6 6 H 1.07996 * 120.00504 * 136.25978 * 5 4 3 7 7 C 1.39025 * 119.99735 * 315.98233 * 5 4 3 8 8 N 1.31378 * 120.00182 * 170.17769 * 7 5 4 9 9 Si 1.86805 * 120.00164 * 350.17496 * 7 5 4 10 10 H 1.48493 * 109.46871 * 94.82477 * 9 7 5 11 11 H 1.48501 * 109.47289 * 214.82725 * 9 7 5 12 12 H 1.48503 * 109.46648 * 334.82504 * 9 7 5 13 13 C 1.34781 * 119.99623 * 83.78113 * 4 3 2 14 14 O 1.21603 * 120.00211 * 5.86844 * 13 4 3 15 15 C 1.47605 * 119.99526 * 185.86881 * 13 4 3 16 16 C 1.40071 * 120.51060 * 320.22200 * 15 13 4 17 17 N 1.31463 * 121.51467 * 179.97438 * 16 15 13 18 18 C 1.32345 * 121.78631 * 0.02562 * 17 16 15 19 19 O 1.34451 * 134.97479 * 179.97438 * 18 17 16 20 20 N 1.20862 * 113.07315 * 180.02562 * 19 18 17 21 21 C 1.30006 * 113.52602 * 0.02562 * 20 19 18 22 22 C 1.50699 * 127.39863 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47146 * 270.00220 * 22 21 20 24 24 C 1.41226 * 119.94883 * 0.02562 * 18 17 16 25 25 C 1.38655 * 120.06366 * 359.69340 * 24 18 17 26 26 H 1.09003 * 109.47278 * 304.93274 * 1 2 3 27 27 H 1.08998 * 109.47579 * 64.93326 * 1 2 3 28 28 H 1.09000 * 109.47506 * 184.93423 * 1 2 3 29 29 H 1.09000 * 109.47013 * 239.99978 * 2 1 3 30 30 H 1.09002 * 109.46740 * 119.99936 * 2 1 3 31 31 H 1.09001 * 109.47162 * 64.88069 * 3 2 1 32 32 H 1.09002 * 109.47121 * 304.88187 * 3 2 1 33 33 H 0.97002 * 120.00509 * 179.97438 * 8 7 5 34 34 H 1.07996 * 119.24587 * 0.02562 * 16 15 13 35 35 H 1.09001 * 109.47498 * 29.99769 * 22 21 20 36 36 H 1.09002 * 109.47316 * 150.00096 * 22 21 20 37 37 H 1.09007 * 109.47111 * 299.99710 * 23 22 21 38 38 H 1.08995 * 109.47375 * 60.00035 * 23 22 21 39 39 H 1.09005 * 109.47548 * 180.02562 * 23 22 21 40 40 H 1.08000 * 121.14972 * 180.31529 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4442 -0.1175 5 6 4.2773 1.5399 1.0057 6 1 5.1450 0.9067 1.1176 7 6 3.9526 2.4562 1.9995 8 7 4.5750 2.4193 3.1559 9 14 2.6313 3.7402 1.6906 10 1 1.3306 3.2466 2.2096 11 1 2.9949 5.0015 2.3849 12 1 2.5184 3.9930 0.2316 13 6 4.0787 1.3514 -1.3313 14 8 3.3928 1.3739 -2.3351 15 6 5.5450 1.2226 -1.4420 16 6 6.3891 1.9562 -0.5987 17 7 7.6974 1.8563 -0.6799 18 6 8.2824 1.0600 -1.5603 19 8 9.5555 0.7581 -1.8698 20 7 9.6469 -0.0441 -2.7692 21 6 8.4977 -0.4343 -3.2353 22 6 8.2481 -1.4196 -4.3478 23 6 8.1871 -0.6760 -5.6836 24 6 7.4966 0.2895 -2.4453 25 6 6.1131 0.3617 -2.3883 26 1 -0.3634 0.5885 0.8425 27 1 -0.3634 0.4354 -0.9308 28 1 -0.3634 -1.0238 0.0884 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7498 1.9305 0.9305 32 1 1.6070 1.9810 -0.8430 33 1 4.3488 3.0589 3.8492 34 1 5.9552 2.6186 0.1357 35 1 9.0572 -2.1496 -4.3751 36 1 7.3020 -1.9322 -4.1738 37 1 7.3779 0.0540 -5.6564 38 1 9.1331 -0.1634 -5.8577 39 1 8.0060 -1.3886 -6.4883 40 1 5.4953 -0.2236 -3.0532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299128632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:50 Heat of formation + Delta-G solvation = 57.661607 kcal Electronic energy + Delta-G solvation = -24857.627170 eV Core-core repulsion = 21255.205121 eV Total energy + Delta-G solvation = -3602.422050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.46254 -39.89610 -38.29590 -35.60025 -35.43346 -33.32621 -32.26425 -31.89853 -30.93370 -30.79078 -26.65134 -25.45726 -24.84643 -23.96753 -23.42818 -21.47100 -20.71774 -19.83490 -18.31119 -17.74672 -17.52175 -17.08371 -15.99484 -15.78650 -15.20038 -14.47955 -14.40604 -14.33909 -14.14307 -13.90570 -13.45248 -13.25022 -12.99631 -12.86079 -12.82734 -12.50298 -12.31507 -11.84688 -11.79124 -11.75845 -11.63722 -11.16551 -11.10089 -11.03651 -10.71086 -10.54095 -10.19800 -9.91719 -9.68825 -9.20267 -8.96357 -8.90894 -8.69773 -7.98966 -6.65953 -4.40268 0.85708 1.04607 2.26844 2.57762 2.92904 3.09424 3.14865 3.36257 3.85095 3.93374 3.94123 4.13730 4.29783 4.60677 4.74712 4.96875 5.07621 5.10221 5.16248 5.25507 5.40329 5.47589 5.52001 5.61393 5.66124 5.72290 5.83150 5.87648 5.91386 5.99264 6.06396 6.16255 6.20675 6.30609 6.36515 6.58783 6.72118 6.77679 7.17491 7.81952 7.88433 7.99372 8.38894 8.65970 9.02906 9.36443 10.41375 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.004801 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.788810 B = 5830.423822 C = 6950.173940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.103 3.897 4 N -0.453 5.453 5 C -0.361 4.361 6 H 0.108 0.892 7 C 0.071 3.929 8 N -0.850 5.850 9 Si 0.881 3.119 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.257 1.257 13 C 0.530 3.470 14 O -0.584 6.584 15 C -0.159 4.159 16 C 0.220 3.780 17 N -0.472 5.472 18 C 0.217 3.783 19 O 0.075 5.925 20 N -0.326 5.326 21 C 0.065 3.935 22 C -0.043 4.043 23 C -0.148 4.148 24 C -0.233 4.233 25 C 0.033 3.967 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.280 0.720 34 H 0.207 0.793 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -4.726 -9.193 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.172 5.172 5 C -0.488 4.488 6 H 0.125 0.875 7 C -0.139 4.139 8 N -0.483 5.483 9 Si 0.708 3.292 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.181 1.181 13 C 0.318 3.682 14 O -0.469 6.469 15 C -0.164 4.164 16 C 0.056 3.944 17 N -0.189 5.189 18 C 0.035 3.965 19 O 0.019 5.981 20 N -0.034 5.034 21 C -0.104 4.104 22 C -0.081 4.081 23 C -0.206 4.206 24 C -0.239 4.239 25 C 0.004 3.996 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.223 0.777 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.018 -4.404 -9.137 10.342 hybrid contribution -1.841 0.184 -0.095 1.853 sum 0.177 -4.220 -9.233 10.153 Atomic orbital electron populations 1.21709 0.96083 1.01246 1.01532 1.21787 0.95104 0.97653 1.02535 1.21733 0.82212 0.96889 1.01116 1.43580 1.04521 1.63687 1.05383 1.19168 1.11766 1.21890 0.96015 0.87474 1.25435 0.97040 0.96645 0.94762 1.69646 1.40188 1.35104 1.03369 0.86835 0.81299 0.81040 0.80012 1.19777 1.21154 1.18135 1.17788 0.85862 0.80893 0.83636 1.90675 1.64141 1.55749 1.36344 1.20970 0.96294 1.00678 0.98466 1.24145 0.84401 0.93456 0.92431 1.66729 1.12591 1.19333 1.20232 1.21859 0.85381 0.95094 0.94125 1.84801 1.24042 1.47832 1.41454 1.73418 1.22919 1.05187 1.01869 1.24187 0.87403 0.99830 0.98992 1.19979 1.03648 0.94502 0.89994 1.21744 1.02705 1.00829 0.95309 1.20740 0.95799 1.04812 1.02563 1.20760 0.90866 0.93678 0.94264 0.92927 0.92847 0.92901 0.91881 0.91351 0.91423 0.91103 0.90901 0.77711 0.89578 0.89135 0.91979 0.92318 0.91401 0.83622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.13 -2.31 6.21 -26.73 -0.17 -2.47 16 3 C 0.10 2.07 3.68 -4.04 -0.01 2.05 16 4 N -0.45 -9.91 2.14 -115.96 -0.25 -10.16 16 5 C -0.36 -8.43 6.73 -15.00 -0.10 -8.53 16 6 H 0.11 2.69 6.79 -52.49 -0.36 2.33 16 7 C 0.07 1.69 5.40 -17.45 -0.09 1.60 16 8 N -0.85 -21.53 13.95 55.50 0.77 -20.75 16 9 Si 0.88 18.74 24.67 -169.99 -4.19 14.54 16 10 H -0.27 -5.56 6.85 56.52 0.39 -5.18 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.26 -5.53 6.86 56.52 0.39 -5.14 16 13 C 0.53 11.44 7.28 -12.44 -0.09 11.35 16 14 O -0.58 -13.45 16.59 5.27 0.09 -13.37 16 15 C -0.16 -3.12 5.38 -104.74 -0.56 -3.68 16 16 C 0.22 4.39 8.99 -17.02 -0.15 4.24 16 17 N -0.47 -9.43 10.36 -12.59 -0.13 -9.56 16 18 C 0.22 4.06 8.75 -16.20 -0.14 3.92 16 19 O 0.08 1.34 11.12 16.09 0.18 1.52 16 20 N -0.33 -5.30 11.94 34.92 0.42 -4.89 16 21 C 0.07 0.96 6.84 -79.98 -0.55 0.41 16 22 C -0.04 -0.45 6.55 -27.88 -0.18 -0.63 16 23 C -0.15 -1.36 9.89 37.16 0.37 -0.99 16 24 C -0.23 -3.95 6.55 -105.22 -0.69 -4.64 16 25 C 0.03 0.57 9.84 -38.78 -0.38 0.18 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.38 3.57 -51.93 -0.19 1.20 16 32 H 0.07 1.42 7.54 -51.93 -0.39 1.03 16 33 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 34 H 0.21 4.28 6.02 -52.49 -0.32 3.97 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.15 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -26.93 335.30 -5.51 -32.44 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.06 Total: 4.08 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.39 Total: 1.09 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.81 Total: -45.36 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.27 Total: -11.85 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.19 Total: 14.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.93 -5.51 -32.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299128632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.100 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds