Wall clock time and date at job start Tue Mar 31 2020 08:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 N 1.46502 * 109.47067 * 184.87812 * 3 2 1 5 5 C 1.36904 * 120.00230 * 263.78384 * 4 3 2 6 6 H 1.07996 * 120.00504 * 136.25978 * 5 4 3 7 7 C 1.39025 * 119.99735 * 315.98233 * 5 4 3 8 8 N 1.31378 * 120.00182 * 170.17769 * 7 5 4 9 9 Si 1.86805 * 120.00164 * 350.17496 * 7 5 4 10 10 H 1.48493 * 109.46871 * 94.82477 * 9 7 5 11 11 H 1.48501 * 109.47289 * 214.82725 * 9 7 5 12 12 H 1.48503 * 109.46648 * 334.82504 * 9 7 5 13 13 C 1.34781 * 119.99623 * 83.78113 * 4 3 2 14 14 O 1.21603 * 120.00211 * 5.86844 * 13 4 3 15 15 C 1.47605 * 119.99526 * 185.86881 * 13 4 3 16 16 C 1.40071 * 120.51060 * 320.22200 * 15 13 4 17 17 N 1.31463 * 121.51467 * 179.97438 * 16 15 13 18 18 C 1.32345 * 121.78631 * 0.02562 * 17 16 15 19 19 O 1.34451 * 134.97479 * 179.97438 * 18 17 16 20 20 N 1.20862 * 113.07315 * 180.02562 * 19 18 17 21 21 C 1.30006 * 113.52602 * 0.02562 * 20 19 18 22 22 C 1.50699 * 127.39863 * 180.02562 * 21 20 19 23 23 C 1.53000 * 109.47146 * 270.00220 * 22 21 20 24 24 C 1.41226 * 119.94883 * 0.02562 * 18 17 16 25 25 C 1.38655 * 120.06366 * 359.69340 * 24 18 17 26 26 H 1.09003 * 109.47278 * 304.93274 * 1 2 3 27 27 H 1.08998 * 109.47579 * 64.93326 * 1 2 3 28 28 H 1.09000 * 109.47506 * 184.93423 * 1 2 3 29 29 H 1.09000 * 109.47013 * 239.99978 * 2 1 3 30 30 H 1.09002 * 109.46740 * 119.99936 * 2 1 3 31 31 H 1.09001 * 109.47162 * 64.88069 * 3 2 1 32 32 H 1.09002 * 109.47121 * 304.88187 * 3 2 1 33 33 H 0.97002 * 120.00509 * 179.97438 * 8 7 5 34 34 H 1.07996 * 119.24587 * 0.02562 * 16 15 13 35 35 H 1.09001 * 109.47498 * 29.99769 * 22 21 20 36 36 H 1.09002 * 109.47316 * 150.00096 * 22 21 20 37 37 H 1.09007 * 109.47111 * 299.99710 * 23 22 21 38 38 H 1.08995 * 109.47375 * 60.00035 * 23 22 21 39 39 H 1.09005 * 109.47548 * 180.02562 * 23 22 21 40 40 H 1.08000 * 121.14972 * 180.31529 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5003 1.4442 -0.1175 5 6 4.2773 1.5399 1.0057 6 1 5.1450 0.9067 1.1176 7 6 3.9526 2.4562 1.9995 8 7 4.5750 2.4193 3.1559 9 14 2.6313 3.7402 1.6906 10 1 1.3306 3.2466 2.2096 11 1 2.9949 5.0015 2.3849 12 1 2.5184 3.9930 0.2316 13 6 4.0787 1.3514 -1.3313 14 8 3.3928 1.3739 -2.3351 15 6 5.5450 1.2226 -1.4420 16 6 6.3891 1.9562 -0.5987 17 7 7.6974 1.8563 -0.6799 18 6 8.2824 1.0600 -1.5603 19 8 9.5555 0.7581 -1.8698 20 7 9.6469 -0.0441 -2.7692 21 6 8.4977 -0.4343 -3.2353 22 6 8.2481 -1.4196 -4.3478 23 6 8.1871 -0.6760 -5.6836 24 6 7.4966 0.2895 -2.4453 25 6 6.1131 0.3617 -2.3883 26 1 -0.3634 0.5885 0.8425 27 1 -0.3634 0.4354 -0.9308 28 1 -0.3634 -1.0238 0.0884 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.7498 1.9305 0.9305 32 1 1.6070 1.9810 -0.8430 33 1 4.3488 3.0589 3.8492 34 1 5.9552 2.6186 0.1357 35 1 9.0572 -2.1496 -4.3751 36 1 7.3020 -1.9322 -4.1738 37 1 7.3779 0.0540 -5.6564 38 1 9.1331 -0.1634 -5.8577 39 1 8.0060 -1.3886 -6.4883 40 1 5.4953 -0.2236 -3.0532 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299128632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:49 Heat of formation + Delta-G solvation = 41.233847 kcal Electronic energy + Delta-G solvation = -24858.339532 eV Core-core repulsion = 21255.205121 eV Total energy + Delta-G solvation = -3603.134411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.78573 -41.50382 -39.88562 -37.27669 -36.57484 -34.88050 -33.78373 -33.43846 -32.25365 -32.06040 -28.07337 -27.20607 -26.17621 -25.09334 -24.89408 -22.85604 -21.99939 -21.45863 -19.91612 -19.13189 -18.88704 -18.68384 -17.64055 -17.25772 -16.83067 -16.08714 -15.75607 -15.69837 -15.39498 -14.98871 -14.88361 -14.62765 -14.59905 -14.36562 -14.10613 -13.93042 -13.76899 -13.35795 -13.20482 -12.93244 -12.65164 -12.55745 -12.44814 -12.10811 -12.01246 -11.97647 -11.84520 -11.51238 -11.30712 -10.86341 -10.53427 -10.37703 -10.21022 -9.75433 -8.51379 -6.27545 -0.53538 -0.46745 0.97659 1.13791 1.22418 1.35080 1.44062 1.71001 2.15869 2.30389 2.53718 2.75434 2.90868 2.98605 3.30108 3.65082 3.71154 3.85907 4.02186 4.07784 4.14388 4.29427 4.30947 4.36274 4.40365 4.51137 4.55546 4.67772 4.86421 4.90215 4.94345 4.99334 5.08097 5.13698 5.20655 5.24850 5.31388 5.32429 5.50259 5.99147 6.13426 6.40581 6.84208 7.02069 7.23866 7.59484 8.59541 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.004801 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.788810 B = 5830.423822 C = 6950.173940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C 0.096 3.904 4 N -0.462 5.462 5 C -0.349 4.349 6 H 0.083 0.917 7 C 0.039 3.961 8 N -0.890 5.890 9 Si 0.926 3.074 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.533 3.467 14 O -0.598 6.598 15 C -0.180 4.180 16 C 0.216 3.784 17 N -0.492 5.492 18 C 0.205 3.795 19 O 0.058 5.942 20 N -0.337 5.337 21 C 0.091 3.909 22 C -0.046 4.046 23 C -0.145 4.145 24 C -0.235 4.235 25 C 0.054 3.946 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.283 0.717 34 H 0.190 0.810 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 -6.128 -11.235 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.026 4.026 4 N -0.181 5.181 5 C -0.476 4.476 6 H 0.101 0.899 7 C -0.168 4.168 8 N -0.525 5.525 9 Si 0.752 3.248 10 H -0.180 1.180 11 H -0.214 1.214 12 H -0.186 1.186 13 C 0.322 3.678 14 O -0.484 6.484 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.210 5.210 18 C 0.024 3.976 19 O 0.006 5.994 20 N -0.048 5.048 21 C -0.080 4.080 22 C -0.084 4.084 23 C -0.203 4.203 24 C -0.240 4.240 25 C 0.026 3.974 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.206 0.794 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.010 -5.794 -11.157 12.613 hybrid contribution -1.411 0.528 0.406 1.561 sum -0.401 -5.266 -10.751 11.978 Atomic orbital electron populations 1.21685 0.93252 1.02885 1.02204 1.21729 0.97540 0.95483 1.01734 1.21889 0.81063 0.98753 1.00866 1.43675 1.05341 1.64016 1.05032 1.18891 1.11297 1.21172 0.96257 0.89940 1.25892 0.98585 0.97857 0.94424 1.69716 1.42071 1.36351 1.04349 0.86121 0.80141 0.79091 0.79471 1.18005 1.21359 1.18574 1.17975 0.86515 0.80011 0.83276 1.90651 1.64767 1.56370 1.36572 1.20864 0.95287 1.02425 0.99990 1.23793 0.84656 0.93727 0.92546 1.66605 1.12624 1.20493 1.21296 1.22056 0.86307 0.95058 0.94217 1.84825 1.23582 1.48672 1.42310 1.73436 1.23526 1.05701 1.02143 1.24909 0.85739 0.98801 0.98508 1.20320 1.05518 0.93844 0.88681 1.21749 1.02018 1.01191 0.95369 1.20952 0.95832 1.04707 1.02531 1.20986 0.91156 0.92282 0.92991 0.92453 0.92035 0.90781 0.92486 0.92291 0.91763 0.91047 0.90671 0.79375 0.87632 0.87048 0.92884 0.93012 0.88599 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.95 16 2 C -0.13 -4.24 6.21 30.59 0.19 -4.05 16 3 C 0.10 3.78 3.68 86.38 0.32 4.10 16 4 N -0.46 -20.26 2.14 -639.06 -1.37 -21.62 16 5 C -0.35 -16.66 6.73 84.09 0.57 -16.10 16 6 H 0.08 4.32 6.79 -2.91 -0.02 4.31 16 7 C 0.04 1.88 5.40 84.95 0.46 2.34 16 8 N -0.89 -46.27 13.95 21.68 0.30 -45.97 16 9 Si 0.93 38.57 24.67 68.60 1.69 40.26 16 10 H -0.25 -9.86 6.85 99.48 0.68 -9.18 16 11 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.26 -10.97 6.86 99.48 0.68 -10.29 16 13 C 0.53 22.90 7.28 86.72 0.63 23.53 16 14 O -0.60 -26.91 16.59 -4.04 -0.07 -26.98 16 15 C -0.18 -7.10 5.38 -19.94 -0.11 -7.21 16 16 C 0.22 8.96 8.99 85.19 0.77 9.72 16 17 N -0.49 -20.29 10.36 -307.24 -3.18 -23.48 16 18 C 0.21 7.72 8.75 85.35 0.75 8.46 16 19 O 0.06 2.05 11.12 67.75 0.75 2.81 16 20 N -0.34 -10.50 11.94 -43.54 -0.52 -11.02 16 21 C 0.09 2.45 6.84 45.02 0.31 2.76 16 22 C -0.05 -0.77 6.55 29.85 0.20 -0.57 16 23 C -0.15 -2.16 9.89 71.98 0.71 -1.45 16 24 C -0.23 -7.62 6.55 -20.25 -0.13 -7.75 16 25 C 0.05 1.78 9.84 22.79 0.22 2.00 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 2.55 3.57 -2.39 -0.01 2.55 16 32 H 0.07 2.78 7.54 -2.39 -0.02 2.76 16 33 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 34 H 0.19 8.34 6.02 -2.91 -0.02 8.32 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.17 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -58.51 335.30 4.22 -54.29 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.02 Total: 18.88 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.59 Total: 12.83 kcal Atomic # 7 Polarization: -97.32 SS G_CDS: -4.77 Total: -102.09 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.69 Total: -24.17 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.69 Total: 40.26 kcal Total: -58.51 4.22 -54.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299128632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.522 kcal (2) G-P(sol) polarization free energy of solvation -58.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds