Wall clock time and date at job start Tue Mar 31 2020 08:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99978 * 2 1 4 4 N 1.46498 * 109.46712 * 235.00351 * 3 2 1 5 5 C 1.46505 * 119.99726 * 277.39795 * 4 3 2 6 6 C 1.50705 * 109.46859 * 90.00396 * 5 4 3 7 7 H 1.07998 * 120.00261 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99877 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99848 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99748 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47132 * 90.00541 * 10 8 6 12 12 H 1.48501 * 109.47236 * 210.00244 * 10 8 6 13 13 H 1.48491 * 109.47624 * 330.00473 * 10 8 6 14 14 C 1.34773 * 120.00694 * 97.40361 * 4 3 2 15 15 O 1.21279 * 120.00720 * 186.48943 * 14 4 3 16 16 C 1.50706 * 119.99235 * 6.48839 * 14 4 3 17 17 C 1.50697 * 115.55017 * 282.67543 * 16 14 4 18 18 C 1.38262 * 119.99115 * 308.99817 * 17 16 14 19 19 C 1.38222 * 120.05509 * 180.02562 * 18 17 16 20 20 C 1.38223 * 120.02425 * 359.97438 * 19 18 17 21 21 C 1.38435 * 119.97311 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.02445 * 180.02562 * 21 20 19 23 23 C 1.38182 * 119.98626 * 128.72781 * 17 16 14 24 24 C 1.52999 * 117.49610 * 137.01214 * 16 14 4 25 25 C 1.52999 * 117.49901 * 68.35056 * 16 14 4 26 26 H 1.07998 * 120.00111 * 180.02562 * 1 2 3 27 27 H 1.08007 * 119.99570 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99853 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.46801 * 354.99893 * 3 2 1 30 30 H 1.08998 * 109.47156 * 115.00240 * 3 2 1 31 31 H 1.09002 * 109.46980 * 210.00002 * 5 4 3 32 32 H 1.08993 * 109.47530 * 330.00602 * 5 4 3 33 33 H 0.97004 * 120.00077 * 180.02562 * 9 8 6 34 34 H 1.08004 * 119.97237 * 0.02562 * 18 17 16 35 35 H 1.08008 * 119.98802 * 179.97438 * 19 18 17 36 36 H 1.07997 * 120.01018 * 180.02562 * 20 19 18 37 37 H 1.08003 * 120.00630 * 359.97438 * 23 17 16 38 38 H 1.09001 * 117.49951 * 359.97438 * 24 16 14 39 39 H 1.09003 * 117.50298 * 145.01954 * 24 16 14 40 40 H 1.08996 * 117.49811 * 214.97645 * 25 16 14 41 41 H 1.09004 * 117.49942 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 -1.1315 5 6 4.3015 0.6809 -1.0202 6 6 4.1890 -0.7526 -1.4717 7 1 3.2385 -1.1400 -1.8076 8 6 5.2997 -1.5694 -1.4561 9 7 6.4570 -1.0978 -1.0466 10 14 5.1602 -3.3463 -2.0151 11 1 5.4274 -3.4288 -3.4735 12 1 6.1512 -4.1749 -1.2827 13 1 3.7912 -3.8478 -1.7336 14 6 2.6466 1.9554 -2.2748 15 8 3.3638 1.8781 -3.2497 16 6 1.3670 2.7487 -2.3417 17 6 0.1052 1.9365 -2.4799 18 6 0.0085 0.9722 -3.4660 19 6 -1.1484 0.2268 -3.5944 20 6 -2.2100 0.4444 -2.7364 21 6 -2.1145 1.4097 -1.7487 22 9 -3.1513 1.6229 -0.9092 23 6 -0.9528 2.1519 -1.6175 24 6 1.4137 4.1066 -3.0451 25 6 1.2912 4.0376 -1.5208 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 -0.0896 30 1 2.6214 1.4026 0.9313 31 1 5.0224 1.2042 -1.6483 32 1 4.6347 0.7099 0.0171 33 1 7.2386 -1.6723 -1.0360 34 1 0.8378 0.8011 -4.1366 35 1 -1.2229 -0.5260 -4.3653 36 1 -3.1137 -0.1384 -2.8366 37 1 -0.8752 2.9020 -0.8443 38 1 2.3700 4.4263 -3.4592 39 1 0.5316 4.4127 -3.6076 40 1 0.3285 4.2983 -1.0811 41 1 2.1666 4.3116 -0.9321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359426464.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:33 Heat of formation + Delta-G solvation = -14.718610 kcal Electronic energy + Delta-G solvation = -25581.696447 eV Core-core repulsion = 21956.215794 eV Total energy + Delta-G solvation = -3625.480653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.83663 -41.69884 -39.70218 -37.52804 -37.13508 -35.01525 -33.71938 -31.76660 -31.41972 -29.74677 -27.10947 -26.17450 -24.66441 -23.99472 -22.93132 -22.48174 -20.93155 -19.85852 -18.73621 -18.63341 -17.53974 -17.14817 -17.04922 -16.98279 -16.59257 -16.43670 -16.15879 -15.83563 -15.09504 -15.02291 -14.72845 -14.20993 -14.19148 -14.08476 -13.74910 -13.55065 -13.39003 -13.24253 -12.81715 -12.73454 -12.58882 -12.49286 -12.31723 -12.11582 -12.04371 -11.65264 -11.58371 -11.45700 -10.69552 -10.63588 -10.24147 -9.73018 -9.57098 -9.48981 -8.22656 -6.34531 0.17303 0.23409 1.32372 1.34484 1.36231 1.45256 1.74265 2.27808 2.40284 2.47921 2.85920 3.07320 3.19445 3.51448 3.62284 3.78060 3.88834 4.00688 4.09693 4.15367 4.23834 4.24582 4.43192 4.53334 4.59441 4.66955 4.74655 4.89540 4.95588 4.98771 5.06618 5.11925 5.13039 5.17817 5.20017 5.36862 5.54845 5.56663 5.78722 5.81938 5.88822 5.93627 6.06879 6.69195 6.76769 7.27229 7.43674 8.84858 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.005464 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.221716 B = 5123.290780 C = 5776.498672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.174 4.174 3 C 0.138 3.862 4 N -0.589 5.589 5 C 0.261 3.739 6 C -0.527 4.527 7 H 0.051 0.949 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.265 1.265 14 C 0.541 3.459 15 O -0.590 6.590 16 C -0.138 4.138 17 C -0.008 4.008 18 C -0.132 4.132 19 C -0.085 4.085 20 C -0.149 4.149 21 C 0.098 3.902 22 F -0.140 7.140 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.138 4.138 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.082 0.918 31 H -0.002 1.002 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.099 0.901 35 H 0.148 0.852 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.143 0.857 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 8.279 1.326 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.194 4.194 3 C 0.016 3.984 4 N -0.317 5.317 5 C 0.140 3.860 6 C -0.566 4.566 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.784 3.216 11 H -0.207 1.207 12 H -0.200 1.200 13 H -0.189 1.189 14 C 0.329 3.671 15 O -0.470 6.470 16 C -0.141 4.141 17 C -0.009 4.009 18 C -0.151 4.151 19 C -0.103 4.103 20 C -0.168 4.168 21 C 0.079 3.921 22 F -0.118 7.118 23 C -0.159 4.159 24 C -0.169 4.169 25 C -0.174 4.174 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.104 0.896 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.107 0.893 39 H 0.145 0.855 40 H 0.161 0.839 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.485 8.193 0.928 21.158 hybrid contribution 0.870 -1.370 -0.379 1.667 sum -18.614 6.823 0.549 19.833 Atomic orbital electron populations 1.24166 0.94849 1.02677 0.99515 1.23222 0.96540 0.98754 1.00840 1.20826 0.92077 0.96464 0.89005 1.48114 1.17547 1.52225 1.13857 1.18795 0.79828 0.91630 0.95775 1.21611 0.95277 0.96431 1.43255 0.93096 1.25769 0.94802 1.03072 0.95357 1.70033 1.00562 1.37933 1.48316 0.85542 0.78376 0.79533 0.78165 1.20725 1.19951 1.18914 1.19955 0.86009 0.79064 0.82026 1.90639 1.55496 1.64299 1.36612 1.19967 0.90986 0.90176 1.12986 1.18353 0.91844 0.95608 0.95050 1.21104 0.98445 0.96782 0.98736 1.21127 0.91607 0.98518 0.99055 1.21341 1.01109 0.98830 0.95489 1.17553 0.85011 0.98274 0.91274 1.91506 1.56475 1.94151 1.69682 1.20971 0.91712 1.02163 1.01063 1.23144 1.04486 0.93226 0.96020 1.23420 1.05880 0.93992 0.94153 0.88394 0.86407 0.89599 0.87333 0.89957 0.98388 0.95681 0.92510 0.88246 0.83422 0.82547 0.82160 0.89308 0.85478 0.83949 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 12.21 67.77 0.83 -3.80 16 2 C -0.17 -5.81 9.35 25.64 0.24 -5.57 16 3 C 0.14 4.52 5.58 85.63 0.48 5.00 16 4 N -0.59 -25.31 2.46 -830.49 -2.04 -27.35 16 5 C 0.26 14.15 5.14 85.63 0.44 14.59 16 6 C -0.53 -30.57 8.64 25.60 0.22 -30.34 16 7 H 0.05 2.97 7.41 -2.91 -0.02 2.95 16 8 C 0.01 0.51 5.46 84.66 0.46 0.97 16 9 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 10 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.54 22.91 6.44 87.66 0.56 23.48 16 15 O -0.59 -31.28 16.61 -3.03 -0.05 -31.33 16 16 C -0.14 -4.00 1.07 -53.67 -0.06 -4.06 16 17 C -0.01 -0.21 3.98 -19.87 -0.08 -0.29 16 18 C -0.13 -3.80 9.40 22.27 0.21 -3.59 16 19 C -0.09 -1.90 10.04 22.26 0.22 -1.68 16 20 C -0.15 -2.85 10.03 22.31 0.22 -2.63 16 21 C 0.10 1.94 6.08 22.37 0.14 2.08 16 22 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 23 C -0.14 -2.82 5.63 22.31 0.13 -2.70 16 24 C -0.13 -3.12 9.83 30.62 0.30 -2.82 16 25 C -0.14 -2.75 8.06 30.62 0.25 -2.50 16 26 H 0.10 2.46 8.06 -2.91 -0.02 2.44 16 27 H 0.12 2.61 4.27 -2.91 -0.01 2.59 16 28 H 0.09 3.48 7.26 -2.91 -0.02 3.46 16 29 H 0.11 2.74 4.42 -2.39 -0.01 2.73 16 30 H 0.08 2.59 8.00 -2.39 -0.02 2.57 16 31 H 0.00 -0.12 7.52 -2.39 -0.02 -0.14 16 32 H 0.03 1.38 7.97 -2.39 -0.02 1.36 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.10 3.46 7.99 -2.91 -0.02 3.43 16 35 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.16 2.35 6.29 -2.91 -0.02 2.33 16 38 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.14 1.77 6.44 -2.39 -0.02 1.75 16 41 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -73.79 341.91 6.60 -67.20 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.04 Total: 15.77 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 4.56 Total: -13.87 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -1.76 Total: -83.55 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.05 Total: -31.33 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.79 6.60 -67.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359426464.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.478 kcal (2) G-P(sol) polarization free energy of solvation -73.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds