Wall clock time and date at job start Tue Mar 31 2020 08:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47038 * 2 1 4 4 H 1.09000 * 109.47079 * 54.99745 * 3 2 1 5 5 C 1.50695 * 109.47278 * 175.00228 * 3 2 1 6 6 H 1.08001 * 120.00357 * 120.00348 * 5 3 2 7 7 C 1.37877 * 119.99795 * 299.72288 * 5 3 2 8 8 N 1.31518 * 120.00143 * 0.27615 * 7 5 3 9 9 Si 1.86801 * 119.99867 * 180.27366 * 7 5 3 10 10 H 1.48496 * 109.47627 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46906 * 120.00437 * 9 7 5 12 12 H 1.48502 * 109.47014 * 239.99938 * 9 7 5 13 13 N 1.46509 * 109.47373 * 295.00162 * 3 2 1 14 14 C 1.34769 * 119.99965 * 84.99734 * 13 3 2 15 15 O 1.21801 * 120.00231 * 355.66067 * 14 13 3 16 16 C 1.41648 * 120.00194 * 175.66120 * 14 13 3 17 17 C 1.38502 * 126.78625 * 5.02310 * 16 14 13 18 18 N 1.32326 * 108.26003 * 179.86513 * 17 16 14 19 19 C 1.33326 * 109.85295 * 0.41677 * 18 17 16 20 20 C 1.40330 * 131.74120 * 179.69408 * 19 18 17 21 21 C 1.37982 * 119.21997 * 180.02562 * 20 19 18 22 22 O 1.35637 * 120.33255 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00231 * 179.97438 * 22 21 20 24 24 C 1.40757 * 119.33415 * 359.97438 * 21 20 19 25 25 C 1.35006 * 120.04538 * 0.02562 * 24 21 20 26 26 N 1.36033 * 120.85896 * 0.02562 * 25 24 21 27 27 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47359 * 299.99919 * 1 2 3 29 29 H 1.09005 * 109.47475 * 60.00501 * 1 2 3 30 30 H 1.09006 * 109.46756 * 240.00032 * 2 1 3 31 31 H 1.08997 * 109.47162 * 120.00083 * 2 1 3 32 32 H 0.96998 * 119.99823 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99900 * 265.00192 * 13 3 2 34 34 H 1.08003 * 125.87319 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.38962 * 0.02562 * 20 19 18 36 36 H 1.09005 * 109.46842 * 60.00037 * 23 22 21 37 37 H 1.09003 * 109.47301 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47110 * 300.00347 * 23 22 21 39 39 H 1.08006 * 119.97529 * 180.02562 * 24 21 20 40 40 H 1.08008 * 119.57159 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1430 0.8835 1.2306 8 7 3.4059 0.3421 2.1758 9 14 6.0043 0.8926 1.3877 10 1 6.5982 1.5571 0.1998 11 1 6.3939 1.6328 2.6147 12 1 6.5007 -0.5043 1.4738 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3718 2.5639 -0.4601 16 6 0.0940 3.3771 -2.5426 17 6 0.8587 3.4969 -3.6911 18 7 0.1897 4.2385 -4.5592 19 6 -0.9736 4.6173 -4.0292 20 6 -2.0193 5.4039 -4.5363 21 6 -3.1285 5.6382 -3.7497 22 8 -4.1520 6.3956 -4.2171 23 6 -5.2655 6.5919 -3.3432 24 6 -3.1870 5.0834 -2.4574 25 6 -2.1647 4.3308 -1.9979 26 7 -1.0684 4.0976 -2.7689 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8289 -0.0527 2.9543 33 1 2.2718 2.1232 -1.9978 34 1 1.8328 3.0589 -3.8515 35 1 -1.9567 5.8209 -5.5306 36 1 -4.9290 7.0849 -2.4311 37 1 -6.0108 7.2143 -3.8385 38 1 -5.7057 5.6266 -3.0931 39 1 -4.0505 5.2598 -1.8330 40 1 -2.2175 3.9092 -1.0049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424773938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:30 Heat of formation + Delta-G solvation = 15.462497 kcal Electronic energy + Delta-G solvation = -24412.311587 eV Core-core repulsion = 20808.059647 eV Total energy + Delta-G solvation = -3604.251940 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.84310 -39.88030 -38.83466 -36.55096 -35.11570 -33.13808 -32.50229 -31.18564 -30.49103 -29.14186 -27.54768 -26.64714 -24.19951 -23.52509 -22.75958 -22.02014 -20.56595 -19.43276 -18.36977 -18.12974 -17.19364 -16.58334 -16.42538 -15.81512 -15.69130 -15.32348 -15.03167 -14.44648 -14.38991 -14.20561 -13.85367 -13.41973 -13.16102 -12.84976 -12.68982 -12.42852 -11.99084 -11.72668 -11.67833 -11.55563 -11.27432 -10.98643 -10.86675 -10.36404 -10.25171 -10.19507 -10.11297 -9.62626 -9.21200 -9.06186 -9.02931 -8.52698 -7.97630 -7.56369 -6.14877 -4.24143 0.56916 0.85717 2.36889 2.42367 2.72824 3.23079 3.31386 3.34170 3.37353 3.91224 4.11195 4.23241 4.32705 4.39170 4.50587 4.69028 4.75713 4.80726 4.97639 5.08190 5.17118 5.22745 5.48523 5.56383 5.71910 5.80270 6.16760 6.38710 6.46013 6.47979 6.65568 6.80819 6.95635 7.04795 7.17292 7.32779 7.39816 7.59775 7.68961 7.74354 7.87221 8.14920 8.58970 8.73256 9.02892 9.43103 10.90573 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.003258 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.222644 B = 8591.583765 C = 9087.114999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.274 3.726 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.693 5.693 14 C 0.580 3.420 15 O -0.563 6.563 16 C -0.130 4.130 17 C 0.104 3.896 18 N -0.502 5.502 19 C 0.270 3.730 20 C -0.147 4.147 21 C 0.152 3.848 22 O -0.306 6.306 23 C 0.024 3.976 24 C -0.222 4.222 25 C 0.127 3.873 26 N -0.341 5.341 27 H 0.020 0.980 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.192 0.808 35 H 0.159 0.841 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.159 0.841 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.048 9.436 -10.093 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.173 3.827 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.340 5.340 14 C 0.367 3.633 15 O -0.445 6.445 16 C -0.243 4.243 17 C -0.054 4.054 18 N -0.222 5.222 19 C 0.030 3.970 20 C -0.168 4.168 21 C 0.100 3.900 22 O -0.218 6.218 23 C -0.071 4.071 24 C -0.243 4.243 25 C 0.002 3.998 26 N -0.013 5.013 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.223 0.777 34 H 0.208 0.792 35 H 0.177 0.823 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.176 0.824 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.306 9.534 -10.143 19.961 hybrid contribution 0.854 -0.308 0.864 1.253 sum -13.452 9.226 -9.279 18.766 Atomic orbital electron populations 1.21859 0.98307 0.97852 1.01318 1.21937 0.92669 0.99667 1.02354 1.18830 0.94284 0.89216 0.80396 0.93266 1.21265 0.90578 1.39150 1.06249 0.91868 1.24880 0.98660 0.94754 0.95351 1.69906 1.35080 1.37711 1.09262 0.86394 0.84784 0.77793 0.78161 1.19645 1.20924 1.20859 1.46246 1.13654 1.55409 1.18738 1.15403 0.83649 0.79593 0.84615 1.90771 1.49429 1.62640 1.41685 1.20327 0.89936 1.12105 1.01932 1.23208 0.99050 0.95255 0.87894 1.70533 1.03216 1.18073 1.30425 1.20544 0.95672 0.98737 0.82054 1.19303 0.90418 1.04754 1.02342 1.18833 0.88330 0.91226 0.91581 1.86024 1.27042 1.65763 1.42960 1.23175 0.87051 1.02040 0.94830 1.21051 1.01463 1.04700 0.97135 1.21893 0.84181 0.95901 0.97852 1.42615 1.13006 1.32417 1.13261 0.96057 0.93225 0.94122 0.94912 0.88269 0.92605 0.77717 0.79152 0.82316 0.92185 0.87801 0.92188 0.82373 0.79906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.46 37.16 0.31 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.39 7.64 -51.93 -0.40 1.00 16 5 C -0.53 -13.76 8.72 -34.44 -0.30 -14.06 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.88 -24.26 11.30 55.43 0.63 -23.64 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.69 -14.15 5.00 -57.82 -0.29 -14.44 16 14 C 0.58 11.60 6.31 -14.96 -0.09 11.51 16 15 O -0.56 -12.50 12.15 5.10 0.06 -12.44 16 16 C -0.13 -2.26 6.83 -83.39 -0.57 -2.83 16 17 C 0.10 1.61 11.32 -17.24 -0.20 1.42 16 18 N -0.50 -8.11 11.25 -12.31 -0.14 -8.25 16 19 C 0.27 4.11 7.76 -156.01 -1.21 2.90 16 20 C -0.15 -1.83 10.09 -38.89 -0.39 -2.22 16 21 C 0.15 1.64 6.72 -38.72 -0.26 1.38 16 22 O -0.31 -2.81 10.49 -18.61 -0.20 -3.01 16 23 C 0.02 0.12 9.82 101.05 0.99 1.11 16 24 C -0.22 -2.24 8.98 -39.78 -0.36 -2.60 16 25 C 0.13 1.69 10.49 -16.84 -0.18 1.51 16 26 N -0.34 -5.40 2.97 -60.20 -0.18 -5.57 16 27 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.15 7.79 -51.93 -0.40 0.75 16 29 H 0.04 0.88 5.54 -51.93 -0.29 0.60 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.89 7.32 -40.82 -0.30 6.59 16 34 H 0.19 2.34 7.37 -52.48 -0.39 1.96 16 35 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.25 7.68 -51.93 -0.40 -0.15 16 39 H 0.16 1.04 6.39 -52.48 -0.34 0.71 16 40 H 0.18 2.47 6.80 -52.48 -0.36 2.12 16 LS Contribution 331.23 15.07 4.99 4.99 Total: -1.00 -31.61 331.23 -7.59 -39.20 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.81 Total: 7.37 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.65 Total: 0.46 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.02 Total: -51.90 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.13 Total: -15.44 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.61 -7.59 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424773938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.667 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds