Wall clock time and date at job start Tue Mar 31 2020 08:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47038 * 2 1 4 4 H 1.09000 * 109.47079 * 54.99745 * 3 2 1 5 5 C 1.50695 * 109.47278 * 175.00228 * 3 2 1 6 6 H 1.08001 * 120.00357 * 120.00348 * 5 3 2 7 7 C 1.37877 * 119.99795 * 299.72288 * 5 3 2 8 8 N 1.31518 * 120.00143 * 0.27615 * 7 5 3 9 9 Si 1.86801 * 119.99867 * 180.27366 * 7 5 3 10 10 H 1.48496 * 109.47627 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46906 * 120.00437 * 9 7 5 12 12 H 1.48502 * 109.47014 * 239.99938 * 9 7 5 13 13 N 1.46509 * 109.47373 * 295.00162 * 3 2 1 14 14 C 1.34769 * 119.99965 * 84.99734 * 13 3 2 15 15 O 1.21801 * 120.00231 * 355.66067 * 14 13 3 16 16 C 1.41648 * 120.00194 * 175.66120 * 14 13 3 17 17 C 1.38502 * 126.78625 * 5.02310 * 16 14 13 18 18 N 1.32326 * 108.26003 * 179.86513 * 17 16 14 19 19 C 1.33326 * 109.85295 * 0.41677 * 18 17 16 20 20 C 1.40330 * 131.74120 * 179.69408 * 19 18 17 21 21 C 1.37982 * 119.21997 * 180.02562 * 20 19 18 22 22 O 1.35637 * 120.33255 * 179.97438 * 21 20 19 23 23 C 1.42897 * 117.00231 * 179.97438 * 22 21 20 24 24 C 1.40757 * 119.33415 * 359.97438 * 21 20 19 25 25 C 1.35006 * 120.04538 * 0.02562 * 24 21 20 26 26 N 1.36033 * 120.85896 * 0.02562 * 25 24 21 27 27 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47359 * 299.99919 * 1 2 3 29 29 H 1.09005 * 109.47475 * 60.00501 * 1 2 3 30 30 H 1.09006 * 109.46756 * 240.00032 * 2 1 3 31 31 H 1.08997 * 109.47162 * 120.00083 * 2 1 3 32 32 H 0.96998 * 119.99823 * 179.97438 * 8 7 5 33 33 H 0.96997 * 119.99900 * 265.00192 * 13 3 2 34 34 H 1.08003 * 125.87319 * 359.97438 * 17 16 14 35 35 H 1.08002 * 120.38962 * 0.02562 * 20 19 18 36 36 H 1.09005 * 109.46842 * 60.00037 * 23 22 21 37 37 H 1.09003 * 109.47301 * 179.97438 * 23 22 21 38 38 H 1.09000 * 109.47110 * 300.00347 * 23 22 21 39 39 H 1.08006 * 119.97529 * 180.02562 * 24 21 20 40 40 H 1.08008 * 119.57159 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4443 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1430 0.8835 1.2306 8 7 3.4059 0.3421 2.1758 9 14 6.0043 0.8926 1.3877 10 1 6.5982 1.5571 0.1998 11 1 6.3939 1.6328 2.6147 12 1 6.5007 -0.5043 1.4738 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3718 2.5639 -0.4601 16 6 0.0940 3.3771 -2.5426 17 6 0.8587 3.4969 -3.6911 18 7 0.1897 4.2385 -4.5592 19 6 -0.9736 4.6173 -4.0292 20 6 -2.0193 5.4039 -4.5363 21 6 -3.1285 5.6382 -3.7497 22 8 -4.1520 6.3956 -4.2171 23 6 -5.2655 6.5919 -3.3432 24 6 -3.1870 5.0834 -2.4574 25 6 -2.1647 4.3308 -1.9979 26 7 -1.0684 4.0976 -2.7689 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8289 -0.0527 2.9543 33 1 2.2718 2.1232 -1.9978 34 1 1.8328 3.0589 -3.8515 35 1 -1.9567 5.8209 -5.5306 36 1 -4.9290 7.0849 -2.4311 37 1 -6.0108 7.2143 -3.8385 38 1 -5.7057 5.6266 -3.0931 39 1 -4.0505 5.2598 -1.8330 40 1 -2.2175 3.9092 -1.0049 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424773938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:29 Heat of formation + Delta-G solvation = -4.971792 kcal Electronic energy + Delta-G solvation = -24413.197685 eV Core-core repulsion = 20808.059647 eV Total energy + Delta-G solvation = -3605.138038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.96545 -40.83105 -40.29633 -37.55477 -36.91460 -34.33674 -34.20805 -32.96184 -31.52563 -30.35003 -28.82695 -27.86047 -25.46339 -24.86136 -24.34174 -23.06433 -22.10686 -21.17246 -19.74443 -19.01410 -18.41328 -17.82351 -17.48053 -17.31090 -17.03119 -16.62002 -16.16502 -15.99748 -15.77722 -15.32308 -15.15588 -14.64838 -14.59096 -14.27931 -13.80434 -13.52483 -13.48109 -13.16394 -13.08350 -12.86934 -12.70119 -12.67420 -12.36591 -12.14982 -12.05309 -11.57427 -11.45964 -11.04618 -11.02193 -10.78194 -10.52157 -10.08601 -9.68506 -8.72471 -8.14961 -6.31424 -0.44313 -0.22832 1.23358 1.28039 1.45593 1.47680 1.58986 1.99582 2.33062 2.38333 2.47091 2.74870 3.15262 3.25572 3.37628 3.48250 3.87433 3.92020 4.01763 4.32748 4.36051 4.43149 4.51415 4.52460 4.59664 4.76044 4.79288 4.81132 4.87230 5.08435 5.14457 5.27996 5.34154 5.45995 5.56026 5.62759 5.80068 5.82415 5.93221 6.13384 6.17755 6.56050 6.75704 6.94149 7.33237 7.50599 8.90739 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.003258 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.222644 B = 8591.583765 C = 9087.114999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.285 3.715 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.594 6.594 16 C -0.171 4.171 17 C 0.120 3.880 18 N -0.525 5.525 19 C 0.267 3.733 20 C -0.163 4.163 21 C 0.173 3.827 22 O -0.311 6.311 23 C 0.009 3.991 24 C -0.193 4.193 25 C 0.098 3.902 26 N -0.347 5.347 27 H 0.041 0.959 28 H 0.028 0.972 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.216 0.784 35 H 0.173 0.827 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.074 0.926 39 H 0.199 0.801 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 10.663 -11.640 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.182 3.818 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.341 5.341 14 C 0.374 3.626 15 O -0.478 6.478 16 C -0.283 4.283 17 C -0.039 4.039 18 N -0.246 5.246 19 C 0.028 3.972 20 C -0.185 4.185 21 C 0.120 3.880 22 O -0.222 6.222 23 C -0.085 4.085 24 C -0.214 4.214 25 C -0.027 4.027 26 N -0.019 5.019 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.233 0.767 35 H 0.191 0.809 36 H 0.092 0.908 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.216 0.784 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.398 10.787 -11.722 22.155 hybrid contribution 0.897 -0.511 1.287 1.650 sum -14.501 10.276 -10.435 20.609 Atomic orbital electron populations 1.21682 0.96985 0.98811 1.00333 1.21792 0.93759 0.99111 1.01327 1.18393 0.93671 0.89117 0.80665 0.98046 1.21603 0.91310 1.38942 1.06594 0.90904 1.25728 1.03142 0.94399 0.95041 1.70050 1.36922 1.38497 1.09789 0.85347 0.79328 0.77784 0.78183 1.18447 1.21127 1.20503 1.45930 1.14453 1.55807 1.17922 1.15630 0.82887 0.79010 0.85080 1.90741 1.50236 1.63780 1.43060 1.19896 0.91880 1.14813 1.01742 1.23622 0.99466 0.93970 0.86887 1.70554 1.04016 1.19162 1.30870 1.20974 0.95976 0.98412 0.81800 1.19547 0.90499 1.05010 1.03400 1.18888 0.88153 0.89868 0.91102 1.86058 1.27351 1.64684 1.44151 1.23597 0.86099 1.03537 0.95238 1.21470 1.01159 1.01720 0.97008 1.22085 0.84791 0.97832 0.97978 1.42684 1.13159 1.32356 1.13702 0.93971 0.95277 0.93966 0.94089 0.90880 0.92617 0.76112 0.76740 0.80918 0.90837 0.85530 0.90783 0.78418 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.46 71.98 0.61 -4.85 16 2 C -0.12 -5.93 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.44 2.24 44.24 0.10 14.54 16 4 H 0.00 0.10 7.64 -2.39 -0.02 0.08 16 5 C -0.55 -28.54 8.72 25.60 0.22 -28.32 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.91 5.30 84.65 0.45 1.35 16 8 N -0.91 -51.66 11.30 21.45 0.24 -51.42 16 9 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 13 N -0.69 -28.96 5.00 -455.01 -2.27 -31.23 16 14 C 0.58 24.11 6.31 85.08 0.54 24.65 16 15 O -0.59 -27.56 12.15 -4.67 -0.06 -27.62 16 16 C -0.17 -6.03 6.83 38.97 0.27 -5.76 16 17 C 0.12 3.69 11.32 84.68 0.96 4.64 16 18 N -0.53 -16.67 11.25 -192.87 -2.17 -18.84 16 19 C 0.27 7.95 7.76 133.86 1.04 8.99 16 20 C -0.16 -3.78 10.09 22.72 0.23 -3.55 16 21 C 0.17 3.24 6.72 22.82 0.15 3.40 16 22 O -0.31 -4.57 10.49 -89.51 -0.94 -5.51 16 23 C 0.01 0.05 9.82 113.37 1.11 1.17 16 24 C -0.19 -3.38 8.98 22.14 0.20 -3.18 16 25 C 0.10 2.55 10.49 83.30 0.87 3.43 16 26 N -0.35 -10.97 2.97 -344.36 -1.02 -11.99 16 27 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.03 1.39 7.79 -2.39 -0.02 1.37 16 29 H 0.04 1.87 5.54 -2.38 -0.01 1.86 16 30 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.07 4.00 5.96 -2.39 -0.01 3.98 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 33 H 0.40 14.33 7.32 -92.71 -0.68 13.65 16 34 H 0.22 5.09 7.37 -2.91 -0.02 5.07 16 35 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 36 H 0.07 0.29 7.68 -2.38 -0.02 0.27 16 37 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.07 0.28 7.68 -2.39 -0.02 0.26 16 39 H 0.20 1.77 6.39 -2.91 -0.02 1.75 16 40 H 0.17 4.81 6.80 -2.91 -0.02 4.79 16 Total: -1.00 -70.71 331.23 3.13 -67.58 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.41 Total: 24.45 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.92 Total: 10.74 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -5.22 Total: -113.48 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.00 Total: -33.13 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -70.71 3.13 -67.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424773938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.604 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds