Wall clock time and date at job start Tue Mar 31 2020 08:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46957 * 2 1 4 4 H 1.08997 * 109.47124 * 304.89958 * 3 2 1 5 5 C 1.50701 * 109.46689 * 184.89860 * 3 2 1 6 6 H 1.08001 * 119.99724 * 245.44685 * 5 3 2 7 7 C 1.37870 * 120.00199 * 65.45325 * 5 3 2 8 8 N 1.31516 * 120.00119 * 9.46660 * 7 5 3 9 9 Si 1.86797 * 120.00166 * 189.46547 * 7 5 3 10 10 H 1.48507 * 109.47017 * 84.99508 * 9 7 5 11 11 H 1.48497 * 109.47456 * 204.99282 * 9 7 5 12 12 H 1.48503 * 109.47088 * 324.99794 * 9 7 5 13 13 N 1.46501 * 109.47101 * 64.89939 * 3 2 1 14 14 C 1.34777 * 120.00006 * 274.99695 * 13 3 2 15 15 O 1.21623 * 119.99773 * 0.02562 * 14 13 3 16 16 C 1.47236 * 120.00178 * 180.02562 * 14 13 3 17 17 C 1.38030 * 126.81614 * 0.17858 * 16 14 13 18 18 N 1.34095 * 107.88600 * 180.24237 * 17 16 14 19 19 C 1.46496 * 125.15769 * 179.74623 * 18 17 16 20 20 N 1.39771 * 109.68860 * 359.74134 * 18 17 16 21 21 C 1.31370 * 109.08801 * 0.02562 * 20 18 17 22 22 C 1.48320 * 126.51351 * 179.97438 * 21 20 18 23 23 C 1.46731 * 127.11957 * 325.01719 * 22 21 20 24 24 C 1.34361 * 106.02513 * 180.02562 * 23 22 21 25 25 O 1.34159 * 108.99917 * 0.02562 * 24 23 22 26 26 C 1.34083 * 110.75759 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47274 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47383 * 300.00197 * 1 2 3 29 29 H 1.09007 * 109.47097 * 60.00565 * 1 2 3 30 30 H 1.08998 * 109.46943 * 239.99719 * 2 1 3 31 31 H 1.09006 * 109.46577 * 119.99370 * 2 1 3 32 32 H 0.96993 * 120.00244 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00101 * 94.99995 * 13 3 2 34 34 H 1.08004 * 126.05453 * 0.02642 * 17 16 14 35 35 H 1.09005 * 109.47152 * 269.97202 * 19 18 17 36 36 H 1.08999 * 109.47570 * 29.97661 * 19 18 17 37 37 H 1.09007 * 109.47453 * 149.97241 * 19 18 17 38 38 H 1.08002 * 126.98667 * 359.74353 * 23 22 21 39 39 H 1.08000 * 125.49621 * 179.97438 * 24 23 22 40 40 H 1.08003 * 125.77431 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8091 0.6939 7 6 4.1412 0.9801 -1.2730 8 7 3.4098 0.7114 -2.3325 9 14 5.9919 0.7328 -1.3288 10 1 6.3290 -0.6067 -0.7833 11 1 6.4619 0.8274 -2.7342 12 1 6.6561 1.7809 -0.5130 13 7 1.6503 2.0983 1.2508 14 6 0.4328 2.6652 1.3636 15 8 -0.3425 2.6321 0.4271 16 6 0.0414 3.3247 2.6204 17 6 0.8058 3.4472 3.7632 18 7 0.0791 4.1083 4.6759 19 6 0.5264 4.4407 6.0307 20 7 -1.1699 4.4323 4.1386 21 6 -1.2364 3.9844 2.9054 22 6 -2.3875 4.1160 1.9795 23 6 -3.8125 4.0827 2.3279 24 6 -4.4806 4.2397 1.1727 25 8 -3.5972 4.3627 0.1706 26 6 -2.3407 4.2915 0.6332 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8313 0.3852 -3.1429 33 1 2.2685 2.1244 1.9978 34 1 1.8099 3.0734 3.8994 35 1 0.2579 3.6321 6.7106 36 1 1.6082 4.5739 6.0338 37 1 0.0459 5.3635 6.3559 38 1 -4.2379 3.9532 3.3121 39 1 -5.5552 4.2623 1.0679 40 1 -1.4432 4.3612 0.0364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447527059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:49 Heat of formation + Delta-G solvation = 51.599221 kcal Electronic energy + Delta-G solvation = -24677.695229 eV Core-core repulsion = 21075.010294 eV Total energy + Delta-G solvation = -3602.684934 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.07597 -40.86682 -38.53137 -35.01479 -33.89359 -32.45672 -31.92395 -31.22425 -29.83181 -29.44716 -27.13022 -26.40641 -23.46312 -22.61387 -21.95696 -21.04965 -20.17536 -19.33668 -19.09009 -17.90313 -17.05101 -16.15081 -15.71594 -15.49290 -15.42311 -15.21115 -14.72742 -14.29478 -14.17594 -13.68035 -13.11873 -13.07248 -12.90843 -12.66500 -12.56739 -12.30796 -12.07841 -11.84605 -11.42213 -11.33711 -11.02005 -10.81406 -10.76339 -10.32533 -10.16230 -10.07396 -9.64755 -9.09680 -9.07862 -9.01242 -8.53624 -8.46013 -8.00590 -7.74918 -6.13539 -4.18748 1.65809 1.81813 2.25974 2.37251 3.16485 3.24837 3.32003 3.32723 3.37194 4.13146 4.15783 4.35158 4.46850 4.59372 4.83936 4.94434 5.05383 5.19160 5.19711 5.35140 5.49309 5.60388 5.70219 5.87770 6.11981 6.40497 6.45990 6.47351 6.48571 6.66579 6.67445 6.85534 7.05934 7.22509 7.37619 7.39094 7.47827 7.63444 7.67810 7.76916 7.88675 8.10155 8.73519 8.82638 9.21626 9.47712 10.94604 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.004411 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.280402 B = 6345.547362 C = 7678.449788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.271 3.729 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.705 5.705 14 C 0.581 3.419 15 O -0.549 6.549 16 C -0.272 4.272 17 C 0.095 3.905 18 N -0.371 5.371 19 C 0.100 3.900 20 N -0.294 5.294 21 C 0.203 3.797 22 C -0.142 4.142 23 C -0.188 4.188 24 C -0.055 4.055 25 O -0.182 6.182 26 C 0.058 3.942 27 H 0.021 0.979 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.383 0.617 34 H 0.184 0.816 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.200 0.800 40 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.822 6.419 13.723 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.169 3.831 4 H 0.076 0.924 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.351 5.351 14 C 0.367 3.633 15 O -0.430 6.430 16 C -0.287 4.287 17 C -0.054 4.054 18 N -0.151 5.151 19 C -0.042 4.042 20 N -0.115 5.115 21 C 0.035 3.965 22 C -0.145 4.145 23 C -0.208 4.208 24 C -0.121 4.121 25 O -0.077 6.077 26 C -0.012 4.012 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.215 0.785 34 H 0.201 0.799 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.165 0.835 39 H 0.216 0.784 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.958 7.002 13.645 17.762 hybrid contribution 1.966 -0.809 0.216 2.136 sum -6.992 6.194 13.862 16.715 Atomic orbital electron populations 1.21840 0.97885 0.98061 1.01720 1.21847 0.93085 0.99884 1.00985 1.18780 0.94178 0.88864 0.81259 0.92411 1.21166 0.90648 1.44001 1.01736 0.92223 1.24865 0.98294 0.95196 0.95021 1.69979 1.35680 1.43724 1.02119 0.86567 0.85216 0.78656 0.77266 1.20484 1.21194 1.19978 1.46338 1.14232 1.56168 1.18387 1.17066 0.82460 0.78269 0.85485 1.90663 1.51423 1.61036 1.39860 1.21682 0.95793 1.14044 0.97162 1.22978 0.97984 0.95321 0.89073 1.48028 1.11027 1.43803 1.12277 1.21912 1.00742 1.02825 0.78678 1.77307 0.99317 1.24397 1.10459 1.20807 0.91565 0.93887 0.90276 1.18809 0.90219 1.13570 0.91906 1.22700 0.91631 1.07260 0.99238 1.23736 0.95184 1.07671 0.85495 1.83940 1.15648 1.70965 1.37159 1.24750 0.85219 0.97563 0.93715 0.96030 0.93798 0.92887 0.90358 0.94899 0.92570 0.78476 0.79907 0.90622 0.89186 0.89222 0.83515 0.78366 0.76241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.12 -2.81 5.50 -26.73 -0.15 -2.96 16 3 C 0.27 6.60 2.11 -69.08 -0.15 6.45 16 4 H 0.06 1.64 7.52 -51.93 -0.39 1.25 16 5 C -0.54 -13.78 8.66 -34.44 -0.30 -14.08 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.45 12.16 55.43 0.67 -23.78 16 9 Si 0.90 20.22 29.55 -169.99 -5.02 15.20 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.13 5.01 -56.07 -0.28 -14.42 16 14 C 0.58 11.52 6.37 -12.60 -0.08 11.44 16 15 O -0.55 -12.15 10.16 5.26 0.05 -12.10 16 16 C -0.27 -4.62 6.31 -102.95 -0.65 -5.27 16 17 C 0.09 1.24 10.94 -16.64 -0.18 1.06 16 18 N -0.37 -4.67 3.95 -67.64 -0.27 -4.94 16 19 C 0.10 0.71 11.39 59.84 0.68 1.39 16 20 N -0.29 -4.66 12.50 34.58 0.43 -4.23 16 21 C 0.20 3.50 7.34 -80.55 -0.59 2.91 16 22 C -0.14 -2.40 6.07 -103.18 -0.63 -3.03 16 23 C -0.19 -2.69 11.15 -37.52 -0.42 -3.10 16 24 C -0.05 -0.69 12.04 29.36 0.35 -0.34 16 25 O -0.18 -2.80 10.55 6.69 0.07 -2.73 16 26 C 0.06 0.98 10.28 29.88 0.31 1.29 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.96 5.65 -51.93 -0.29 0.67 16 29 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 30 H 0.08 2.04 6.80 -51.93 -0.35 1.69 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.38 6.57 7.48 -40.82 -0.31 6.27 16 34 H 0.18 1.71 7.48 -52.48 -0.39 1.32 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.41 8.13 -51.93 -0.42 -0.01 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.22 3.85 6.34 -52.48 -0.33 3.51 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -32.59 339.01 -5.78 -38.36 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -4.97 Total: 8.73 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.57 Total: -5.22 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.56 Total: -47.36 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.12 Total: -14.83 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.59 -5.78 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447527059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.964 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds