Wall clock time and date at job start Tue Mar 31 2020 08:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46957 * 2 1 4 4 H 1.08997 * 109.47124 * 304.89958 * 3 2 1 5 5 C 1.50701 * 109.46689 * 184.89860 * 3 2 1 6 6 H 1.08001 * 119.99724 * 245.44685 * 5 3 2 7 7 C 1.37870 * 120.00199 * 65.45325 * 5 3 2 8 8 N 1.31516 * 120.00119 * 9.46660 * 7 5 3 9 9 Si 1.86797 * 120.00166 * 189.46547 * 7 5 3 10 10 H 1.48507 * 109.47017 * 84.99508 * 9 7 5 11 11 H 1.48497 * 109.47456 * 204.99282 * 9 7 5 12 12 H 1.48503 * 109.47088 * 324.99794 * 9 7 5 13 13 N 1.46501 * 109.47101 * 64.89939 * 3 2 1 14 14 C 1.34777 * 120.00006 * 274.99695 * 13 3 2 15 15 O 1.21623 * 119.99773 * 0.02562 * 14 13 3 16 16 C 1.47236 * 120.00178 * 180.02562 * 14 13 3 17 17 C 1.38030 * 126.81614 * 0.17858 * 16 14 13 18 18 N 1.34095 * 107.88600 * 180.24237 * 17 16 14 19 19 C 1.46496 * 125.15769 * 179.74623 * 18 17 16 20 20 N 1.39771 * 109.68860 * 359.74134 * 18 17 16 21 21 C 1.31370 * 109.08801 * 0.02562 * 20 18 17 22 22 C 1.48320 * 126.51351 * 179.97438 * 21 20 18 23 23 C 1.46731 * 127.11957 * 325.01719 * 22 21 20 24 24 C 1.34361 * 106.02513 * 180.02562 * 23 22 21 25 25 O 1.34159 * 108.99917 * 0.02562 * 24 23 22 26 26 C 1.34083 * 110.75759 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.47274 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47383 * 300.00197 * 1 2 3 29 29 H 1.09007 * 109.47097 * 60.00565 * 1 2 3 30 30 H 1.08998 * 109.46943 * 239.99719 * 2 1 3 31 31 H 1.09006 * 109.46577 * 119.99370 * 2 1 3 32 32 H 0.96993 * 120.00244 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00101 * 94.99995 * 13 3 2 34 34 H 1.08004 * 126.05453 * 0.02642 * 17 16 14 35 35 H 1.09005 * 109.47152 * 269.97202 * 19 18 17 36 36 H 1.08999 * 109.47570 * 29.97661 * 19 18 17 37 37 H 1.09007 * 109.47453 * 149.97241 * 19 18 17 38 38 H 1.08002 * 126.98667 * 359.74353 * 23 22 21 39 39 H 1.08000 * 125.49621 * 179.97438 * 24 23 22 40 40 H 1.08003 * 125.77431 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1213 6 1 4.1493 1.8091 0.6939 7 6 4.1412 0.9801 -1.2730 8 7 3.4098 0.7114 -2.3325 9 14 5.9919 0.7328 -1.3288 10 1 6.3290 -0.6067 -0.7833 11 1 6.4619 0.8274 -2.7342 12 1 6.6561 1.7809 -0.5130 13 7 1.6503 2.0983 1.2508 14 6 0.4328 2.6652 1.3636 15 8 -0.3425 2.6321 0.4271 16 6 0.0414 3.3247 2.6204 17 6 0.8058 3.4472 3.7632 18 7 0.0791 4.1083 4.6759 19 6 0.5264 4.4407 6.0307 20 7 -1.1699 4.4323 4.1386 21 6 -1.2364 3.9844 2.9054 22 6 -2.3875 4.1160 1.9795 23 6 -3.8125 4.0827 2.3279 24 6 -4.4806 4.2397 1.1727 25 8 -3.5972 4.3627 0.1706 26 6 -2.3407 4.2915 0.6332 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8313 0.3852 -3.1429 33 1 2.2685 2.1244 1.9978 34 1 1.8099 3.0734 3.8994 35 1 0.2579 3.6321 6.7106 36 1 1.6082 4.5739 6.0338 37 1 0.0459 5.3635 6.3559 38 1 -4.2379 3.9532 3.3121 39 1 -5.5552 4.2623 1.0679 40 1 -1.4432 4.3612 0.0364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447527059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:49 Heat of formation + Delta-G solvation = 29.545929 kcal Electronic energy + Delta-G solvation = -24678.651531 eV Core-core repulsion = 21075.010294 eV Total energy + Delta-G solvation = -3603.641237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.23302 -42.00429 -40.11856 -36.79284 -35.00430 -34.24366 -33.20987 -32.77980 -31.16304 -30.54617 -28.85591 -27.51165 -25.16421 -24.14200 -23.05604 -22.30954 -21.70014 -20.80900 -20.43142 -19.25838 -18.41837 -17.62628 -17.07595 -16.85048 -16.70777 -16.53322 -16.12503 -15.80615 -15.67482 -14.93419 -14.55742 -14.48821 -13.92716 -13.89256 -13.67685 -13.57550 -13.37307 -13.30363 -13.20683 -12.98272 -12.86170 -12.56914 -12.15918 -12.10704 -11.87722 -11.56183 -11.20140 -11.02535 -10.59666 -10.46072 -10.20036 -9.76086 -9.46379 -9.15263 -8.13856 -6.26199 0.49110 0.60885 1.16935 1.45535 1.48031 1.48940 1.57980 1.92751 2.25637 2.41266 2.69066 2.77278 3.18326 3.37869 3.55988 3.97210 4.12930 4.20569 4.39150 4.46702 4.51991 4.52952 4.58808 4.60408 4.65232 4.73772 4.80533 4.99429 5.12851 5.26039 5.29604 5.35912 5.48759 5.54773 5.60777 5.69265 5.81774 5.92112 6.03796 6.14172 6.23863 6.53319 6.83060 7.14528 7.40259 7.72396 8.94796 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015056 B = 0.004411 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.280402 B = 6345.547362 C = 7678.449788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.262 1.262 13 N -0.701 5.701 14 C 0.580 3.420 15 O -0.580 6.580 16 C -0.312 4.312 17 C 0.124 3.876 18 N -0.360 5.360 19 C 0.086 3.914 20 N -0.309 5.309 21 C 0.183 3.817 22 C -0.156 4.156 23 C -0.207 4.207 24 C -0.036 4.036 25 O -0.192 6.192 26 C 0.032 3.968 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.400 0.600 34 H 0.226 0.774 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.164 0.836 39 H 0.248 0.752 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.029 6.509 16.855 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.187 1.187 13 N -0.349 5.349 14 C 0.368 3.632 15 O -0.463 6.463 16 C -0.327 4.327 17 C -0.027 4.027 18 N -0.138 5.138 19 C -0.053 4.053 20 N -0.131 5.131 21 C 0.016 3.984 22 C -0.160 4.160 23 C -0.226 4.226 24 C -0.101 4.101 25 O -0.088 6.088 26 C -0.038 4.038 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.243 0.757 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.114 0.886 38 H 0.182 0.818 39 H 0.264 0.736 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -8.167 7.121 16.849 20.033 hybrid contribution 1.656 -0.764 -0.634 1.930 sum -6.512 6.357 16.215 18.595 Atomic orbital electron populations 1.21658 0.96883 0.98929 1.00471 1.21697 0.93840 0.99302 1.00145 1.18330 0.93583 0.88793 0.81551 0.97643 1.21544 0.91354 1.43441 1.02068 0.90777 1.25735 1.02887 0.94949 0.94650 1.70137 1.37677 1.44916 1.02753 0.85478 0.79603 0.78989 0.76978 1.19721 1.21742 1.18653 1.46012 1.14958 1.56409 1.17526 1.17461 0.81774 0.77679 0.86268 1.90656 1.52266 1.61995 1.41366 1.21422 0.97147 1.16783 0.97374 1.23485 0.98737 0.93040 0.87455 1.48513 1.09720 1.41918 1.13678 1.22444 1.02944 1.03867 0.76003 1.77242 1.01248 1.24721 1.09871 1.20968 0.91912 0.94622 0.90929 1.19180 0.91804 1.12989 0.91984 1.22959 0.90469 1.08508 1.00669 1.24675 0.96601 1.04566 0.84286 1.83923 1.15503 1.71163 1.38224 1.24426 0.85528 0.99950 0.93937 0.93923 0.93749 0.95392 0.93169 0.93456 0.92781 0.76545 0.75747 0.88690 0.85735 0.88597 0.81801 0.73625 0.78155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.51 71.98 0.61 -4.93 16 2 C -0.11 -5.34 5.50 30.60 0.17 -5.18 16 3 C 0.28 14.07 2.11 44.25 0.09 14.16 16 4 H 0.01 0.34 7.52 -2.39 -0.02 0.32 16 5 C -0.55 -28.05 8.66 25.60 0.22 -27.82 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.96 5.16 84.65 0.44 1.40 16 8 N -0.92 -52.67 12.16 21.45 0.26 -52.41 16 9 Si 0.96 41.28 29.55 68.60 2.03 43.31 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.70 -28.21 5.01 -449.55 -2.25 -30.46 16 14 C 0.58 23.60 6.37 86.61 0.55 24.15 16 15 O -0.58 -27.30 10.16 -4.11 -0.04 -27.34 16 16 C -0.31 -10.52 6.31 -18.78 -0.12 -10.63 16 17 C 0.12 2.89 10.94 84.30 0.92 3.82 16 18 N -0.36 -7.97 3.95 -367.92 -1.45 -9.43 16 19 C 0.09 0.87 11.39 127.77 1.46 2.32 16 20 N -0.31 -9.42 12.50 -44.51 -0.56 -9.98 16 21 C 0.18 6.35 7.34 44.08 0.32 6.67 16 22 C -0.16 -5.45 6.07 -18.93 -0.11 -5.56 16 23 C -0.21 -5.78 11.15 23.60 0.26 -5.52 16 24 C -0.04 -0.87 12.04 66.93 0.81 -0.06 16 25 O -0.19 -6.09 10.55 1.01 0.01 -6.08 16 26 C 0.03 1.15 10.28 67.26 0.69 1.84 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 29 H 0.03 1.37 7.84 -2.38 -0.02 1.35 16 30 H 0.05 2.70 6.80 -2.39 -0.02 2.68 16 31 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.40 13.08 7.48 -92.71 -0.69 12.39 16 34 H 0.23 3.16 7.48 -2.91 -0.02 3.14 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.12 0.46 8.13 -2.39 -0.02 0.44 16 37 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.25 3.22 8.06 -2.91 -0.02 3.20 16 40 H 0.20 7.85 6.34 -2.91 -0.02 7.83 16 Total: -1.00 -75.16 339.01 4.69 -70.47 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.38 Total: 27.25 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: 6.31 Total: -5.34 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.00 Total: -102.28 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.03 Total: -33.42 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -75.16 4.69 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447527059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.016 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds