Wall clock time and date at job start Tue Mar 31 2020 07:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21629 * 120.00258 * 359.97438 * 14 13 12 16 16 C 1.47242 * 120.00027 * 179.97438 * 14 13 12 17 17 C 1.38027 * 126.81397 * 359.68805 * 16 14 13 18 18 N 1.34100 * 107.88473 * 179.86977 * 17 16 14 19 19 H 0.96997 * 125.15470 * 180.11862 * 18 17 16 20 20 N 1.39769 * 109.68857 * 0.40394 * 18 17 16 21 21 C 1.31362 * 109.08575 * 359.75070 * 20 18 17 22 22 C 1.48322 * 126.51311 * 179.97438 * 21 20 18 23 23 C 1.46738 * 127.11943 * 325.03648 * 22 21 20 24 24 C 1.34360 * 106.02437 * 179.97438 * 23 22 21 25 25 O 1.34160 * 108.99970 * 0.02562 * 24 23 22 26 26 C 1.34084 * 110.75953 * 359.76013 * 25 24 23 27 27 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 28 28 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 29 29 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 32 32 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 33 33 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 36 36 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 37 37 H 1.08008 * 126.05721 * 359.97438 * 17 16 14 38 38 H 1.08000 * 126.98493 * 359.97438 * 23 22 21 39 39 H 1.07997 * 125.49707 * 180.02562 * 24 23 22 40 40 H 1.07996 * 125.77595 * 180.26560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5753 -1.4805 3.7812 16 6 1.3864 0.2033 4.8718 17 6 0.5956 1.3339 4.9091 18 7 0.3737 1.6390 6.1959 19 1 -0.1552 2.3895 6.5088 20 7 1.0254 0.7154 7.0180 21 6 1.6465 -0.1650 6.2666 22 6 2.4574 -1.3133 6.7397 23 6 3.3132 -1.3622 7.9306 24 6 3.8445 -2.5961 7.9552 25 8 3.3919 -3.2876 6.8984 26 6 2.5576 -2.5391 6.1626 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7095 1.1615 -3.4844 34 1 1.6766 -1.7488 1.2494 35 1 3.1299 -0.7208 1.2495 36 1 0.9942 0.7583 2.3564 37 1 0.2204 1.8758 4.0534 38 1 3.4818 -0.5678 8.6426 39 1 4.5258 -2.9706 8.7048 40 1 2.0522 -2.8564 5.2624 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458012974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:21 Heat of formation + Delta-G solvation = 45.557475 kcal Electronic energy + Delta-G solvation = -24296.343929 eV Core-core repulsion = 20693.397005 eV Total energy + Delta-G solvation = -3602.946924 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25037 -41.02784 -38.80235 -36.30896 -33.68699 -33.19286 -31.21079 -31.07027 -30.04683 -29.16466 -25.75394 -25.68522 -24.99887 -23.20000 -22.74376 -21.29561 -20.04947 -19.29577 -18.99429 -18.26378 -17.24901 -16.43930 -15.82180 -15.70542 -15.17606 -15.01322 -14.82763 -14.51924 -14.21275 -13.88567 -13.35105 -12.97458 -12.80926 -12.67568 -12.59865 -12.24586 -12.20271 -11.40694 -11.22309 -11.10451 -10.89295 -10.66950 -10.43224 -10.40532 -10.21851 -9.65706 -9.61641 -9.30597 -9.26959 -8.87834 -8.79941 -8.45240 -8.33200 -8.19852 -6.04029 -4.13678 1.47053 1.57204 2.09596 2.55537 2.96267 3.20445 3.26459 3.35292 3.39944 3.75546 3.80322 4.32997 4.40278 4.51173 4.85629 5.15028 5.23205 5.23355 5.39983 5.45310 5.58463 5.92478 6.20031 6.27538 6.28891 6.33386 6.47058 6.50102 6.78213 6.78549 6.91383 6.96309 7.00307 7.03862 7.21370 7.33813 7.43511 7.53188 7.68148 7.98906 8.06437 8.16412 8.37210 8.74600 8.87803 9.52423 10.97473 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.021452 B = 0.003413 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.940259 B = 8201.402821 C = 9256.882348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.133 3.867 13 N -0.713 5.713 14 C 0.584 3.416 15 O -0.553 6.553 16 C -0.278 4.278 17 C 0.106 3.894 18 N -0.467 5.467 19 H 0.442 0.558 20 N -0.289 5.289 21 C 0.208 3.792 22 C -0.144 4.144 23 C -0.188 4.188 24 C -0.052 4.052 25 O -0.181 6.181 26 C 0.056 3.944 27 H 0.005 0.995 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.005 0.995 33 H 0.259 0.741 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.189 0.811 38 H 0.149 0.851 39 H 0.201 0.799 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 1.506 17.490 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.011 3.989 13 N -0.362 5.362 14 C 0.371 3.629 15 O -0.434 6.434 16 C -0.293 4.293 17 C -0.044 4.044 18 N -0.172 5.172 19 H 0.287 0.713 20 N -0.111 5.111 21 C 0.039 3.961 22 C -0.147 4.147 23 C -0.208 4.208 24 C -0.118 4.118 25 O -0.077 6.077 26 C -0.015 4.015 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.205 0.795 38 H 0.167 0.833 39 H 0.218 0.782 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.067 0.997 18.508 18.566 hybrid contribution -0.158 0.662 -1.587 1.727 sum -1.226 1.659 16.921 17.046 Atomic orbital electron populations 1.21828 0.97791 0.99217 0.99960 1.18364 0.92759 0.92751 0.90671 1.21830 0.98669 0.98375 0.99951 1.21032 1.31322 1.12075 0.89854 0.92323 1.24877 0.94861 0.94924 0.98874 1.69809 1.36828 1.22811 1.23103 0.86523 0.78644 0.79790 0.82986 1.19711 1.21086 1.21087 1.21722 0.98248 0.95786 0.83133 1.46150 1.52625 1.31679 1.05772 1.17146 0.79900 0.83702 0.82138 1.90669 1.39285 1.26813 1.86585 1.21506 1.12022 1.01887 0.93899 1.23079 0.96423 0.96099 0.88847 1.45893 1.42052 1.25473 1.03819 0.71343 1.77321 1.14223 1.03125 1.16429 1.20816 0.93634 0.92550 0.89085 1.18829 1.04415 0.92574 0.98908 1.22726 1.00922 0.98175 0.98948 1.23780 1.03664 0.92185 0.92156 1.83940 1.49920 1.41639 1.32159 1.24673 0.92142 0.89452 0.95205 0.97630 0.89628 0.95383 0.95393 0.89622 0.97634 0.93091 0.92550 0.92584 0.77137 0.79461 0.83302 0.78190 0.76417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.50 -12.90 8.01 -34.44 -0.28 -13.18 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -23.13 9.35 55.43 0.52 -22.61 16 8 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 13 N -0.71 -12.10 4.95 -61.44 -0.30 -12.40 16 14 C 0.58 10.06 7.81 -12.60 -0.10 9.96 16 15 O -0.55 -10.89 13.03 5.25 0.07 -10.82 16 16 C -0.28 -4.07 6.31 -102.95 -0.65 -4.72 16 17 C 0.11 1.12 11.50 -16.64 -0.19 0.93 16 18 N -0.47 -4.62 7.20 30.82 0.22 -4.40 16 19 H 0.44 2.59 8.96 -182.85 -1.64 0.95 16 20 N -0.29 -3.96 12.66 34.58 0.44 -3.52 16 21 C 0.21 3.15 7.34 -80.55 -0.59 2.56 16 22 C -0.14 -2.17 6.07 -103.17 -0.63 -2.79 16 23 C -0.19 -2.38 11.15 -37.52 -0.42 -2.80 16 24 C -0.05 -0.58 12.04 29.36 0.35 -0.22 16 25 O -0.18 -2.47 10.55 6.68 0.07 -2.40 16 26 C 0.06 0.83 10.28 29.88 0.31 1.14 16 27 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 28 H 0.09 2.06 6.07 -51.93 -0.32 1.74 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.07 6.07 -51.93 -0.32 1.75 16 32 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 33 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.39 5.85 5.12 -40.82 -0.21 5.64 16 37 H 0.19 1.31 7.48 -52.48 -0.39 0.92 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.22 3.28 6.35 -52.49 -0.33 2.94 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -30.99 333.93 -6.75 -37.74 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.99 Total: 6.68 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.78 Total: -8.70 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.87 Total: -42.94 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.14 Total: -13.22 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.99 -6.75 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458012974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.295 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds