Wall clock time and date at job start Tue Mar 31 2020 08:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99530 * 2 1 4 4 N 1.46501 * 109.46899 * 124.99519 * 3 2 1 5 5 C 1.46499 * 120.00230 * 269.99230 * 4 3 2 6 6 C 1.50700 * 109.47354 * 270.00300 * 5 4 3 7 7 H 1.08000 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99821 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00156 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.47030 * 90.00259 * 10 8 6 12 12 H 1.48505 * 109.47184 * 209.99950 * 10 8 6 13 13 H 1.48496 * 109.47453 * 330.00301 * 10 8 6 14 14 C 1.34778 * 119.99672 * 89.99875 * 4 3 2 15 15 O 1.21590 * 119.99553 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00513 * 359.97438 * 14 4 3 17 17 C 1.39975 * 120.00350 * 184.59235 * 16 14 4 18 18 C 1.38989 * 120.00133 * 144.88319 * 17 16 14 19 19 C 1.38204 * 120.22633 * 180.02562 * 18 17 16 20 20 C 1.38022 * 120.22361 * 359.97438 * 19 18 17 21 21 C 1.39580 * 119.99412 * 0.02562 * 20 19 18 22 22 C 1.47858 * 120.11126 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00370 * 359.97438 * 22 21 20 24 24 O 1.21556 * 119.99756 * 179.97438 * 22 21 20 25 25 C 1.38589 * 119.99853 * 324.90485 * 17 16 14 26 26 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00507 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00110 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47589 * 4.99397 * 3 2 1 30 30 H 1.09002 * 109.46757 * 244.99190 * 3 2 1 31 31 H 1.08999 * 109.46603 * 30.00442 * 5 4 3 32 32 H 1.09001 * 109.46683 * 149.99858 * 5 4 3 33 33 H 0.96992 * 120.00235 * 180.02562 * 9 8 6 34 34 H 0.97007 * 119.99700 * 4.59328 * 16 14 4 35 35 H 1.08001 * 119.88187 * 0.02653 * 18 17 16 36 36 H 1.07997 * 119.89329 * 180.02562 * 19 18 17 37 37 H 1.08006 * 120.00653 * 179.97438 * 20 19 18 38 38 H 0.96999 * 119.99586 * 359.97438 * 23 22 21 39 39 H 0.96999 * 120.00133 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.11043 * 359.70584 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5586 1.8652 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 2.7667 5.3576 3.6563 10 14 1.7221 3.2140 5.0669 11 1 2.7773 2.7230 5.9894 12 1 0.8455 4.1745 5.7841 13 1 0.9109 2.0664 4.5872 14 6 4.2495 0.8663 0.9825 15 8 5.0217 0.8891 1.9215 16 7 4.6496 0.3755 -0.2071 17 6 5.9208 -0.1960 -0.3368 18 6 6.1120 -1.2807 -1.1845 19 6 7.3650 -1.8488 -1.3156 20 6 8.4352 -1.3426 -0.6060 21 6 8.2536 -0.2535 0.2480 22 6 9.3983 0.2913 1.0090 23 7 10.6195 -0.2641 0.8791 24 8 9.2380 1.2400 1.7517 25 6 6.9887 0.3196 0.3805 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 1.4885 1.6969 2.5458 32 1 3.0987 1.3605 3.2260 33 1 2.5377 5.8663 4.4498 34 1 4.0566 0.4182 -0.9736 35 1 5.2785 -1.6808 -1.7427 36 1 7.5076 -2.6912 -1.9762 37 1 9.4128 -1.7895 -0.7108 38 1 10.7473 -1.0214 0.2867 39 1 11.3703 0.0931 1.3787 40 1 6.8431 1.1651 1.0364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493905957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:22 Heat of formation + Delta-G solvation = -0.399361 kcal Electronic energy + Delta-G solvation = -24255.928525 eV Core-core repulsion = 20650.988763 eV Total energy + Delta-G solvation = -3604.939762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56430 -39.54976 -38.04001 -35.93910 -34.64473 -33.65913 -33.14504 -32.15071 -31.01489 -29.65650 -27.89500 -25.65222 -24.22386 -23.29866 -21.85077 -20.60199 -20.17254 -19.35576 -18.48353 -17.43974 -17.02712 -16.88061 -16.24948 -16.01462 -15.22543 -15.05890 -14.66700 -14.64845 -14.30922 -13.91750 -13.76199 -13.61472 -13.48760 -12.99780 -12.57369 -12.31416 -12.01482 -11.88105 -11.63763 -11.50777 -11.28154 -10.94742 -10.51217 -10.29469 -10.10687 -9.98371 -9.75325 -9.58841 -9.37920 -9.32512 -8.93652 -8.55122 -8.16000 -7.71581 -6.04992 -4.03935 0.83410 1.38006 2.26888 2.85814 3.07379 3.32834 3.38459 3.41195 3.46530 3.66156 3.98943 4.30323 4.43155 4.72338 4.76283 4.99392 5.05480 5.15908 5.24694 5.27638 5.38023 5.45195 5.53008 5.83210 5.87465 6.03237 6.21333 6.25269 6.39012 6.51023 6.59005 6.64862 6.73900 6.77666 6.88844 7.10913 7.23186 7.27442 7.43690 7.64050 8.26172 8.38774 8.50092 8.97677 9.09781 9.54898 11.08436 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.004543 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.454920 B = 6161.557118 C = 7893.512337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.173 4.173 3 C 0.136 3.864 4 N -0.597 5.597 5 C 0.232 3.768 6 C -0.530 4.530 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.699 3.301 15 O -0.560 6.560 16 N -0.695 5.695 17 C 0.172 3.828 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.122 4.122 22 C 0.560 3.440 23 N -0.855 5.855 24 O -0.525 6.525 25 C -0.060 4.060 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.398 0.602 39 H 0.403 0.597 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -17.362 -14.287 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.330 5.330 5 C 0.112 3.888 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.401 3.599 15 O -0.435 6.435 16 N -0.345 5.345 17 C 0.076 3.924 18 C -0.151 4.151 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.126 4.126 22 C 0.346 3.654 23 N -0.420 5.420 24 O -0.400 6.400 25 C -0.081 4.081 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.228 0.772 39 H 0.234 0.766 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.504 -16.476 -12.946 21.940 hybrid contribution -0.388 -0.600 0.281 0.767 sum 6.117 -17.075 -12.665 22.122 Atomic orbital electron populations 1.23858 0.95809 1.01930 1.00032 1.23461 0.96516 0.98949 1.00361 1.20566 0.93227 0.95779 0.89179 1.47214 1.08972 1.63174 1.13679 1.19621 0.94758 0.95049 0.79408 1.21335 1.41229 0.91110 1.03210 0.90694 1.24828 0.95274 0.94705 0.98049 1.69893 1.47702 1.06608 1.29252 0.86878 0.79868 0.79632 0.83478 1.19835 1.21080 1.19051 1.15919 0.83105 0.78602 0.82287 1.90945 1.52344 1.60894 1.39320 1.42932 1.15466 1.63734 1.12330 1.17465 0.84459 0.92875 0.97604 1.21063 0.98288 0.94596 1.01163 1.20757 0.92000 1.00103 0.99983 1.21127 0.99076 0.96266 0.96964 1.19735 0.93925 0.98655 1.00305 1.18331 0.83114 0.82598 0.81367 1.43732 1.10660 1.37453 1.50169 1.90899 1.84245 1.27128 1.37740 1.21655 0.89130 0.99731 0.97612 0.88668 0.88108 0.87690 0.88690 0.91190 0.94979 0.94374 0.92557 0.75894 0.85448 0.85299 0.85949 0.77238 0.76619 0.82191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 14.32 29.01 0.42 -1.64 16 2 C -0.17 -2.21 9.85 -36.03 -0.35 -2.57 16 3 C 0.14 2.07 5.65 -5.19 -0.03 2.04 16 4 N -0.60 -12.21 2.44 -182.19 -0.44 -12.66 16 5 C 0.23 5.72 4.23 -5.19 -0.02 5.70 16 6 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 7 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 10 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 11 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 14 C 0.70 14.61 8.12 -86.92 -0.71 13.91 16 15 O -0.56 -14.29 13.36 5.29 0.07 -14.21 16 16 N -0.69 -10.86 5.21 -14.25 -0.07 -10.93 16 17 C 0.17 2.59 6.30 -83.73 -0.53 2.06 16 18 C -0.13 -1.41 9.96 -39.32 -0.39 -1.80 16 19 C -0.11 -1.01 10.02 -39.67 -0.40 -1.40 16 20 C -0.11 -1.14 9.54 -39.16 -0.37 -1.51 16 21 C -0.12 -1.75 5.87 -104.99 -0.62 -2.37 16 22 C 0.56 8.40 8.05 -12.32 -0.10 8.30 16 23 N -0.86 -7.82 8.82 30.53 0.27 -7.55 16 24 O -0.52 -10.73 17.18 5.32 0.09 -10.64 16 25 C -0.06 -1.06 8.23 -38.98 -0.32 -1.38 16 26 H 0.09 0.93 8.06 -52.48 -0.42 0.51 16 27 H 0.10 1.14 7.84 -52.49 -0.41 0.73 16 28 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 30 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 31 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 32 H 0.04 1.02 6.85 -51.93 -0.36 0.66 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.40 4.87 6.52 -40.82 -0.27 4.60 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.74 6.40 -52.48 -0.34 0.41 16 38 H 0.40 2.21 6.86 -40.82 -0.28 1.93 16 39 H 0.40 3.16 8.93 -40.82 -0.36 2.80 16 40 H 0.16 3.58 5.82 -52.49 -0.31 3.27 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -38.70 343.70 -7.36 -46.07 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.70 Total: 9.09 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.86 Total: 5.70 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.52 Total: -58.45 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: 0.16 Total: -24.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.70 -7.36 -46.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493905957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.669 kcal (2) G-P(sol) polarization free energy of solvation -38.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds