Wall clock time and date at job start Tue Mar 31 2020 08:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99530 * 2 1 4 4 N 1.46501 * 109.46899 * 124.99519 * 3 2 1 5 5 C 1.46499 * 120.00230 * 269.99230 * 4 3 2 6 6 C 1.50700 * 109.47354 * 270.00300 * 5 4 3 7 7 H 1.08000 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99712 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99821 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00156 * 359.97438 * 8 6 5 11 11 H 1.48509 * 109.47030 * 90.00259 * 10 8 6 12 12 H 1.48505 * 109.47184 * 209.99950 * 10 8 6 13 13 H 1.48496 * 109.47453 * 330.00301 * 10 8 6 14 14 C 1.34778 * 119.99672 * 89.99875 * 4 3 2 15 15 O 1.21590 * 119.99553 * 179.97438 * 14 4 3 16 16 N 1.34771 * 120.00513 * 359.97438 * 14 4 3 17 17 C 1.39975 * 120.00350 * 184.59235 * 16 14 4 18 18 C 1.38989 * 120.00133 * 144.88319 * 17 16 14 19 19 C 1.38204 * 120.22633 * 180.02562 * 18 17 16 20 20 C 1.38022 * 120.22361 * 359.97438 * 19 18 17 21 21 C 1.39580 * 119.99412 * 0.02562 * 20 19 18 22 22 C 1.47858 * 120.11126 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00370 * 359.97438 * 22 21 20 24 24 O 1.21556 * 119.99756 * 179.97438 * 22 21 20 25 25 C 1.38589 * 119.99853 * 324.90485 * 17 16 14 26 26 H 1.08003 * 119.99870 * 179.97438 * 1 2 3 27 27 H 1.07994 * 120.00507 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00110 * 179.97438 * 2 1 3 29 29 H 1.08991 * 109.47589 * 4.99397 * 3 2 1 30 30 H 1.09002 * 109.46757 * 244.99190 * 3 2 1 31 31 H 1.08999 * 109.46603 * 30.00442 * 5 4 3 32 32 H 1.09001 * 109.46683 * 149.99858 * 5 4 3 33 33 H 0.96992 * 120.00235 * 180.02562 * 9 8 6 34 34 H 0.97007 * 119.99700 * 4.59328 * 16 14 4 35 35 H 1.08001 * 119.88187 * 0.02653 * 18 17 16 36 36 H 1.07997 * 119.89329 * 180.02562 * 19 18 17 37 37 H 1.08006 * 120.00653 * 179.97438 * 20 19 18 38 38 H 0.96999 * 119.99586 * 359.97438 * 23 22 21 39 39 H 0.96999 * 120.00133 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.11043 * 359.70584 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5586 1.8652 2.4249 6 6 2.8440 3.3439 2.4803 7 1 3.3031 3.8372 1.6364 8 6 2.5181 4.0670 3.6081 9 7 2.7667 5.3576 3.6563 10 14 1.7221 3.2140 5.0669 11 1 2.7773 2.7230 5.9894 12 1 0.8455 4.1745 5.7841 13 1 0.9109 2.0664 4.5872 14 6 4.2495 0.8663 0.9825 15 8 5.0217 0.8891 1.9215 16 7 4.6496 0.3755 -0.2071 17 6 5.9208 -0.1960 -0.3368 18 6 6.1120 -1.2807 -1.1845 19 6 7.3650 -1.8488 -1.3156 20 6 8.4352 -1.3426 -0.6060 21 6 8.2536 -0.2535 0.2480 22 6 9.3983 0.2913 1.0090 23 7 10.6195 -0.2641 0.8791 24 8 9.2380 1.2400 1.7517 25 6 6.9887 0.3196 0.3805 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5401 0.9352 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1316 0.0894 30 1 2.6213 1.4026 -0.9314 31 1 1.4885 1.6969 2.5458 32 1 3.0987 1.3605 3.2260 33 1 2.5377 5.8663 4.4498 34 1 4.0566 0.4182 -0.9736 35 1 5.2785 -1.6808 -1.7427 36 1 7.5076 -2.6912 -1.9762 37 1 9.4128 -1.7895 -0.7108 38 1 10.7473 -1.0214 0.2867 39 1 11.3703 0.0931 1.3787 40 1 6.8431 1.1651 1.0364 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493905957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:21 Heat of formation + Delta-G solvation = -31.980509 kcal Electronic energy + Delta-G solvation = -24257.297987 eV Core-core repulsion = 20650.988763 eV Total energy + Delta-G solvation = -3606.309223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87357 -40.82791 -39.22415 -37.38852 -36.01832 -35.02102 -34.67580 -33.82102 -31.99226 -31.05180 -29.54879 -27.00604 -25.27986 -24.96704 -23.24178 -21.73275 -21.37325 -20.65058 -19.60941 -19.14769 -18.75036 -18.14876 -17.45294 -17.01272 -16.66369 -16.51425 -15.97546 -15.90124 -15.87990 -15.20981 -15.11850 -14.91807 -14.63551 -14.52919 -14.15997 -13.68420 -13.54445 -13.20561 -12.99074 -12.79357 -12.60874 -12.53085 -12.30088 -11.96574 -11.76412 -11.53182 -11.21821 -11.00218 -10.84902 -10.78948 -10.35757 -9.93106 -9.64346 -9.06877 -8.35691 -6.40924 -0.16513 0.36934 1.22273 1.30759 1.35673 1.43253 1.71552 1.83893 2.16417 2.29309 2.48298 2.91242 2.96126 3.00924 3.85458 3.95295 4.00919 4.14612 4.16522 4.25401 4.32193 4.45073 4.57404 4.67653 4.81386 4.82820 4.95553 5.06034 5.28089 5.32667 5.36253 5.43128 5.48478 5.50731 5.70303 5.83127 5.88909 5.94165 6.01356 6.24083 6.42225 6.60197 6.94563 7.20726 7.28541 7.54995 8.81714 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.004543 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.454920 B = 6161.557118 C = 7893.512337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.185 4.185 3 C 0.131 3.869 4 N -0.604 5.604 5 C 0.245 3.755 6 C -0.537 4.537 7 H 0.026 0.974 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.948 3.052 11 H -0.281 1.281 12 H -0.271 1.271 13 H -0.234 1.234 14 C 0.692 3.308 15 O -0.618 6.618 16 N -0.674 5.674 17 C 0.141 3.859 18 C -0.108 4.108 19 C -0.094 4.094 20 C -0.090 4.090 21 C -0.143 4.143 22 C 0.552 3.448 23 N -0.821 5.821 24 O -0.600 6.600 25 C -0.104 4.104 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.421 0.579 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.172 0.828 38 H 0.421 0.579 39 H 0.412 0.588 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -22.310 -16.901 28.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C 0.010 3.990 4 N -0.337 5.337 5 C 0.123 3.877 6 C -0.576 4.576 7 H 0.044 0.956 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.770 3.230 11 H -0.207 1.207 12 H -0.196 1.196 13 H -0.156 1.156 14 C 0.394 3.606 15 O -0.498 6.498 16 N -0.326 5.326 17 C 0.046 3.954 18 C -0.129 4.129 19 C -0.111 4.111 20 C -0.109 4.109 21 C -0.146 4.146 22 C 0.339 3.661 23 N -0.386 5.386 24 O -0.481 6.481 25 C -0.126 4.126 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.262 0.738 35 H 0.184 0.816 36 H 0.202 0.798 37 H 0.189 0.811 38 H 0.254 0.746 39 H 0.244 0.756 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.010 -21.506 -15.691 27.291 hybrid contribution -0.079 0.900 0.912 1.284 sum 5.931 -20.605 -14.779 26.042 Atomic orbital electron populations 1.24094 0.95363 1.03116 0.97410 1.23256 0.96810 0.97691 1.02626 1.20829 0.92690 0.97265 0.88262 1.47154 1.09921 1.62888 1.13785 1.19206 0.95419 0.91755 0.81351 1.21582 1.40528 0.93602 1.01896 0.95593 1.25856 0.95972 0.95359 1.01513 1.70055 1.49437 1.08582 1.30536 0.85725 0.78994 0.79529 0.78744 1.20670 1.19617 1.15648 1.16190 0.82660 0.78547 0.83214 1.90917 1.53912 1.63136 1.41832 1.42548 1.16163 1.62954 1.10911 1.17748 0.83076 0.95018 0.99556 1.21520 1.00597 0.91998 0.98737 1.21435 0.90369 1.00321 0.99025 1.21664 1.01871 0.93414 0.93984 1.19786 0.92249 1.00554 1.02054 1.18696 0.84844 0.81896 0.80641 1.43428 1.08882 1.36977 1.49353 1.90863 1.85515 1.30613 1.41123 1.21307 0.92275 0.99777 0.99201 0.86189 0.88180 0.86515 0.89857 0.88663 0.92715 0.96620 0.92258 0.73806 0.81570 0.79821 0.81054 0.74589 0.75587 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 14.32 67.78 0.97 -2.28 16 2 C -0.18 -4.31 9.85 25.65 0.25 -4.05 16 3 C 0.13 3.96 5.65 85.63 0.48 4.45 16 4 N -0.60 -25.74 2.44 -848.58 -2.07 -27.81 16 5 C 0.25 12.53 4.23 85.63 0.36 12.89 16 6 C -0.54 -33.16 9.94 25.60 0.25 -32.91 16 7 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 8 C 0.01 0.67 5.47 84.65 0.46 1.14 16 9 N -0.95 -62.39 13.96 21.45 0.30 -62.09 16 10 Si 0.95 46.42 27.47 68.60 1.88 48.30 16 11 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.23 -10.14 6.54 99.48 0.65 -9.49 16 14 C 0.69 30.79 8.12 179.06 1.45 32.25 16 15 O -0.62 -34.68 13.36 -4.00 -0.05 -34.73 16 16 N -0.67 -21.56 5.21 -317.28 -1.65 -23.21 16 17 C 0.14 4.25 6.30 38.10 0.24 4.49 16 18 C -0.11 -1.90 9.96 22.44 0.22 -1.67 16 19 C -0.09 -1.14 10.02 22.21 0.22 -0.92 16 20 C -0.09 -1.41 9.54 22.54 0.22 -1.19 16 21 C -0.14 -4.13 5.87 -20.10 -0.12 -4.24 16 22 C 0.55 17.34 8.05 86.79 0.70 18.04 16 23 N -0.82 -13.87 8.82 -175.59 -1.55 -15.42 16 24 O -0.60 -27.22 17.18 -3.89 -0.07 -27.28 16 25 C -0.10 -3.96 8.23 22.66 0.19 -3.78 16 26 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 27 H 0.10 2.03 7.84 -2.91 -0.02 2.00 16 28 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.08 2.68 7.72 -2.39 -0.02 2.66 16 30 H 0.10 2.29 6.30 -2.39 -0.02 2.28 16 31 H 0.06 2.54 7.13 -2.39 -0.02 2.52 16 32 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 33 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 34 H 0.42 9.78 6.52 -92.70 -0.60 9.17 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 37 H 0.17 0.93 6.40 -2.91 -0.02 0.91 16 38 H 0.42 3.09 6.86 -92.71 -0.64 2.45 16 39 H 0.41 6.05 8.93 -92.71 -0.83 5.22 16 40 H 0.09 4.82 5.82 -2.91 -0.02 4.80 16 Total: -1.00 -99.78 343.70 1.68 -98.09 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -1.02 Total: 21.94 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: 5.91 Total: 22.21 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -4.97 Total: -128.53 kcal Atomic # 8 Polarization: -61.89 SS G_CDS: -0.12 Total: -62.01 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.88 Total: 48.30 kcal Total: -99.78 1.68 -98.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493905957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.114 kcal (2) G-P(sol) polarization free energy of solvation -99.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds