Wall clock time and date at job start Tue Mar 31 2020 08:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21594 * 119.99473 * 359.97438 * 5 4 2 7 7 N 1.32902 * 120.00767 * 180.02562 * 5 4 2 8 8 C 1.33299 * 120.00185 * 180.02562 * 7 5 4 9 9 C 1.40979 * 126.35811 * 0.02562 * 8 7 5 10 10 C 1.35128 * 108.23977 * 179.97438 * 9 8 7 11 11 N 1.36332 * 108.89832 * 0.02562 * 10 9 8 12 12 C 1.46499 * 125.86248 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46939 * 84.98109 * 12 11 10 14 14 H 1.08004 * 120.00208 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00224 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00072 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00064 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46683 * 89.99883 * 17 15 13 19 19 H 1.48496 * 109.47371 * 209.99997 * 17 15 13 20 20 H 1.48499 * 109.46906 * 330.00318 * 17 15 13 21 21 N 1.37285 * 126.35627 * 179.71539 * 8 7 5 22 22 H 0.97003 * 126.34588 * 0.02562 * 21 8 7 23 23 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 24 24 C 1.34509 * 125.79040 * 119.71829 * 23 2 1 25 25 C 1.41381 * 106.84080 * 179.89258 * 24 23 2 26 26 C 1.34514 * 106.84032 * 0.37077 * 25 24 23 27 27 O 1.34303 * 125.78597 * 300.02786 * 23 2 1 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 30 30 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 31 31 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 32 32 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 33 33 H 1.07995 * 125.88178 * 359.95234 * 9 8 7 34 34 H 1.07997 * 125.54974 * 179.97438 * 10 9 8 35 35 H 1.09003 * 109.47486 * 204.97930 * 12 11 10 36 36 H 1.08995 * 109.47647 * 324.98189 * 12 11 10 37 37 H 0.96998 * 120.00555 * 179.97438 * 16 15 13 38 38 H 1.07998 * 126.57891 * 0.02562 * 24 23 2 39 39 H 1.07999 * 126.58290 * 180.16390 * 25 24 23 40 40 H 1.08001 * 125.79052 * 179.75581 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0101 1.0900 2.3630 7 7 1.9804 -0.3851 3.6832 8 6 1.6273 0.3031 4.7688 9 6 0.8972 1.5089 4.7932 10 6 0.7448 1.8850 6.0821 11 7 1.3507 0.9650 6.8852 12 6 1.4104 1.0097 8.3483 13 6 0.1579 0.3979 8.9210 14 1 -0.6064 0.0145 8.2612 15 6 -0.0124 0.3275 10.2875 16 7 0.9183 0.7939 11.0910 17 14 -1.5653 -0.4301 10.9973 18 1 -1.3582 -1.8869 11.1978 19 1 -1.8771 0.2095 12.3007 20 1 -2.6950 -0.2155 10.0577 21 7 1.9019 -0.0339 6.0710 22 1 2.3892 -0.8169 6.3717 23 6 2.0324 -0.7104 -1.2304 24 6 2.8046 -0.1705 -2.1903 25 6 3.0379 -1.1848 -3.1472 26 6 2.3875 -2.2816 -2.7189 27 8 1.7802 -1.9884 -1.5574 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7198 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 0.5244 2.0406 3.9303 34 1 0.2278 2.7707 6.4208 35 1 2.2792 0.4494 8.6938 36 1 1.4919 2.0456 8.6772 37 1 0.7984 0.7447 12.0523 38 1 3.1769 0.8428 -2.2227 39 1 3.6230 -1.0952 -4.0505 40 1 2.3583 -3.2360 -3.2236 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528610776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:42 Heat of formation + Delta-G solvation = 71.967773 kcal Electronic energy + Delta-G solvation = -23289.584668 eV Core-core repulsion = 19687.782980 eV Total energy + Delta-G solvation = -3601.801688 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58991 -40.90774 -38.78050 -35.16338 -34.12972 -32.97738 -32.89440 -31.12922 -30.81176 -28.93095 -27.86031 -26.52593 -23.62344 -22.82554 -21.80766 -21.51348 -21.28063 -19.95534 -18.84975 -17.36908 -17.10330 -16.75868 -15.97773 -15.75024 -15.29528 -15.05283 -14.89265 -14.56485 -14.19222 -14.00821 -13.53026 -12.99410 -12.92581 -12.84255 -12.79477 -12.67213 -12.57046 -12.11276 -12.01732 -11.40030 -11.25187 -11.09756 -11.02789 -10.77361 -10.56984 -10.40309 -9.95009 -9.61817 -9.31880 -9.07755 -8.96026 -8.47538 -8.32720 -7.02681 -6.54377 -4.70238 1.60054 1.73089 2.01744 2.59168 2.94710 3.00544 3.03257 3.11531 3.15415 4.01711 4.18234 4.31736 4.55172 4.77297 4.88434 4.98433 5.10711 5.12528 5.19689 5.28901 5.53384 5.76106 5.78185 5.81185 5.92512 5.93182 6.00987 6.04999 6.13014 6.30135 6.43387 6.47367 6.48656 6.50070 6.54203 6.70976 7.15063 7.32941 7.42047 7.46760 7.56782 7.91326 8.29586 8.39021 9.00708 9.34492 10.48419 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.036316 B = 0.002298 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.825772 B =12183.807543 C =12342.572901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.003 3.997 3 H 0.105 0.895 4 C -0.109 4.109 5 C 0.497 3.503 6 O -0.586 6.586 7 N -0.704 5.704 8 C 0.469 3.531 9 C -0.332 4.332 10 C 0.162 3.838 11 N -0.339 5.339 12 C 0.253 3.747 13 C -0.560 4.560 14 H 0.070 0.930 15 C 0.070 3.930 16 N -0.886 5.886 17 Si 0.910 3.090 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.270 1.270 21 N -0.466 5.466 22 H 0.445 0.555 23 C 0.010 3.990 24 C -0.221 4.221 25 C -0.214 4.214 26 C -0.053 4.053 27 O -0.172 6.172 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.272 0.728 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -1.302 -17.236 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 H 0.123 0.877 4 C -0.148 4.148 5 C 0.283 3.717 6 O -0.469 6.469 7 N -0.468 5.468 8 C 0.220 3.780 9 C -0.364 4.364 10 C 0.016 3.984 11 N -0.124 5.124 12 C 0.137 3.863 13 C -0.598 4.598 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.522 5.522 17 Si 0.737 3.263 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.194 1.194 21 N -0.187 5.187 22 H 0.293 0.707 23 C -0.041 4.041 24 C -0.240 4.240 25 C -0.233 4.233 26 C -0.120 4.120 27 O -0.068 6.068 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.202 0.798 34 H 0.206 0.794 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 2.850 -1.756 -16.530 16.866 hybrid contribution -0.595 -0.309 0.380 0.771 sum 2.254 -2.065 -16.150 16.437 Atomic orbital electron populations 1.21951 0.93295 1.02016 1.03463 1.19618 0.97083 0.97917 0.86915 0.87730 1.21268 1.02345 1.00000 0.91237 1.20572 0.78630 0.84123 0.88400 1.90494 1.40972 1.26263 1.89164 1.68732 1.42819 1.38623 0.96605 1.19249 0.86043 0.88773 0.83954 1.22480 1.14570 1.01911 0.97461 1.22910 0.91783 0.93144 0.90557 1.48085 1.45458 1.13070 1.05753 1.20104 0.99673 1.00639 0.65923 1.21398 1.03725 1.42473 0.92162 0.91190 1.24960 0.97484 0.94600 0.96469 1.69890 1.33590 1.44190 1.04564 0.86278 0.82131 0.79358 0.78568 1.20169 1.20646 1.19407 1.44614 1.52078 1.20437 1.01613 0.70734 1.22705 1.00392 0.82238 0.98734 1.21597 1.04925 1.01270 0.96194 1.21793 1.05512 0.93697 1.02281 1.23977 0.99754 1.00847 0.87429 1.84025 1.59290 1.28344 1.35155 0.93058 0.89243 0.93064 0.89326 0.89548 0.79811 0.79432 0.92982 0.91251 0.91784 0.83637 0.83768 0.78434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.92 37.16 0.33 -1.70 16 2 C 0.00 0.05 2.44 -91.77 -0.22 -0.18 16 3 H 0.10 1.42 7.91 -51.93 -0.41 1.01 16 4 C -0.11 -1.62 5.23 -27.89 -0.15 -1.76 16 5 C 0.50 9.09 7.42 -11.82 -0.09 9.00 16 6 O -0.59 -11.35 10.87 5.28 0.06 -11.29 16 7 N -0.70 -13.55 10.51 -11.59 -0.12 -13.67 16 8 C 0.47 8.84 8.07 -155.19 -1.25 7.59 16 9 C -0.33 -5.92 9.51 -39.65 -0.38 -6.30 16 10 C 0.16 2.64 11.46 -16.66 -0.19 2.45 16 11 N -0.34 -6.11 3.63 -62.23 -0.23 -6.33 16 12 C 0.25 5.14 6.19 -5.19 -0.03 5.11 16 13 C -0.56 -13.07 9.39 -34.44 -0.32 -13.39 16 14 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 15 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -22.20 13.29 55.43 0.74 -21.46 16 17 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 N -0.47 -8.13 7.37 31.32 0.23 -7.90 16 22 H 0.45 6.88 8.96 -182.55 -1.64 5.24 16 23 C 0.01 0.13 5.83 -35.63 -0.21 -0.08 16 24 C -0.22 -2.59 10.78 -39.70 -0.43 -3.02 16 25 C -0.21 -2.20 10.91 -39.70 -0.43 -2.63 16 26 C -0.05 -0.53 12.09 29.42 0.36 -0.17 16 27 O -0.17 -2.21 10.65 5.70 0.06 -2.15 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.38 5.95 -51.93 -0.31 1.07 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.09 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.18 3.38 5.77 -52.49 -0.30 3.08 16 34 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.20 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -28.39 346.68 -8.60 -37.00 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.43 Total: 10.08 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.11 Total: -3.50 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.62 Total: -49.37 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.12 Total: -13.44 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.39 -8.60 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528610776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.964 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds