Wall clock time and date at job start Tue Mar 31 2020 08:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.29994 * 2 1 4 4 C 1.52909 * 109.31156 * 240.63779 * 2 1 3 5 5 C 1.53339 * 108.68885 * 188.95722 * 4 2 1 6 6 H 1.09009 * 109.70261 * 307.76522 * 5 4 2 7 7 C 1.50697 * 109.67820 * 187.25138 * 5 4 2 8 8 O 1.21287 * 119.99502 * 1.02725 * 7 5 4 9 9 N 1.34774 * 120.00370 * 181.03296 * 7 5 4 10 10 C 1.39475 * 119.99919 * 174.91265 * 9 7 5 11 11 C 1.38591 * 119.57772 * 174.65846 * 10 9 7 12 12 C 1.40812 * 118.79262 * 180.29249 * 11 10 9 13 13 C 1.41550 * 120.99405 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00124 * 26.26404 * 13 12 11 15 15 C 1.40034 * 119.99853 * 206.26072 * 13 12 11 16 16 N 1.30745 * 119.99973 * 9.82864 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 189.82899 * 15 13 12 18 18 H 1.48507 * 109.47078 * 60.00124 * 17 15 13 19 19 H 1.48497 * 109.47211 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47015 * 300.00465 * 17 15 13 21 21 C 1.41177 * 118.01090 * 359.97438 * 12 11 10 22 22 C 1.37587 * 119.01082 * 359.97438 * 21 12 11 23 23 N 1.32075 * 121.11096 * 0.02562 * 22 21 12 24 24 C 1.53066 * 108.42794 * 67.51369 * 5 4 2 25 25 C 1.50173 * 109.89438 * 311.10039 * 24 5 4 26 26 O 1.21279 * 118.25142 * 197.55892 * 25 24 5 27 27 N 1.33356 * 123.50399 * 17.57966 * 25 24 5 28 28 H 1.08999 * 109.47454 * 300.41814 * 1 2 3 29 29 H 1.09000 * 109.47192 * 60.41413 * 1 2 3 30 30 H 1.09001 * 109.47360 * 180.41721 * 1 2 3 31 31 H 1.08994 * 109.60804 * 69.18324 * 4 2 1 32 32 H 1.09002 * 109.58199 * 308.70729 * 4 2 1 33 33 H 0.96994 * 119.99867 * 354.90024 * 9 7 5 34 34 H 1.07995 * 120.60770 * 0.24580 * 11 10 9 35 35 H 0.96997 * 119.99605 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.49406 * 180.02562 * 21 12 11 37 37 H 1.08000 * 119.44486 * 180.02562 * 22 21 12 38 38 H 1.08999 * 109.40378 * 71.23055 * 24 5 4 39 39 H 1.09004 * 109.40280 * 191.05751 * 24 5 4 40 40 H 0.97008 * 117.94755 * 177.77864 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0356 -0.7076 -1.2577 5 6 3.5522 -0.8994 -1.1374 6 1 4.0257 0.0540 -0.9027 7 6 4.1009 -1.4322 -2.4358 8 8 3.3580 -1.6222 -3.3755 9 7 5.4170 -1.6976 -2.5529 10 6 5.9083 -2.2895 -3.7164 11 6 7.2749 -2.4571 -3.8742 12 6 7.7532 -3.0509 -5.0580 13 6 9.1396 -3.2441 -5.2680 14 1 9.8045 -3.3471 -4.4233 15 6 9.6490 -3.3016 -6.5712 16 7 8.8863 -2.9877 -7.5857 17 14 11.4182 -3.8267 -6.8601 18 1 11.6184 -5.2016 -6.3356 19 1 11.7098 -3.8044 -8.3160 20 1 12.3332 -2.8911 -6.1581 21 6 6.8085 -3.4479 -6.0292 22 6 5.4708 -3.2412 -5.7824 23 7 5.0629 -2.6805 -4.6584 24 6 3.8255 -1.9011 -0.0127 25 6 3.0497 -1.5162 1.2141 26 8 3.3848 -1.9923 2.2780 27 7 2.0118 -0.6791 1.1962 28 1 -0.3634 0.5203 0.8862 29 1 -0.3633 0.5074 -0.8937 30 1 -0.3634 -1.0276 0.0075 31 1 1.8122 -0.0996 -2.1343 32 1 1.5503 -1.6792 -1.3503 33 1 6.0226 -1.4769 -1.8281 34 1 7.9607 -2.1375 -3.1036 35 1 9.2393 -3.0272 -8.4882 36 1 7.1310 -3.9077 -6.9517 37 1 4.7421 -3.5426 -6.5204 38 1 3.5234 -2.8978 -0.3343 39 1 4.8905 -1.9030 0.2196 40 1 1.5481 -0.5120 2.0318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543584853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:06 Heat of formation + Delta-G solvation = -47.018521 kcal Electronic energy + Delta-G solvation = -23997.470173 eV Core-core repulsion = 20390.508852 eV Total energy + Delta-G solvation = -3606.961321 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85703 -39.50319 -37.96706 -36.84360 -34.54527 -33.82786 -33.28187 -31.33628 -30.70323 -28.61465 -27.43809 -26.04269 -24.74167 -22.57706 -21.88625 -21.51424 -19.72936 -19.34519 -17.96435 -17.50506 -16.83719 -16.41698 -15.92582 -15.41110 -15.25222 -14.87757 -14.71058 -14.24918 -14.08120 -13.74911 -13.66217 -13.45858 -13.07825 -12.95311 -12.49536 -12.41310 -12.27824 -11.82862 -11.63819 -11.45496 -11.28791 -11.23604 -11.14900 -11.00315 -10.43755 -10.26462 -9.99876 -9.78761 -9.44225 -9.36566 -9.33135 -8.05451 -7.79442 -7.08342 -6.78619 -4.66175 2.43674 2.48520 2.73868 3.00078 3.01300 3.02408 3.12393 3.36840 3.42979 3.83571 4.24561 4.38515 4.40732 4.54799 4.67337 4.85653 4.90659 4.93195 5.19016 5.34388 5.36495 5.46502 5.60823 5.64559 5.71490 5.80078 5.96698 5.99650 6.52569 6.52679 6.54611 6.74199 6.88378 7.08808 7.10928 7.35809 7.46005 7.72151 7.86463 7.99545 8.13953 8.42510 8.61539 8.71587 8.78254 9.63711 10.07272 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.002877 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.143539 B = 9728.703484 C =10390.676847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.112 4.112 6 H 0.103 0.897 7 C 0.505 3.495 8 O -0.474 6.474 9 N -0.659 5.659 10 C 0.346 3.654 11 C -0.300 4.300 12 C 0.144 3.856 13 C -0.455 4.455 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.791 5.791 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.265 1.265 21 C -0.220 4.220 22 C 0.102 3.898 23 N -0.553 5.553 24 C -0.127 4.127 25 C 0.526 3.474 26 O -0.558 6.558 27 N -0.716 5.716 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.406 0.594 34 H 0.102 0.898 35 H 0.283 0.717 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.905 6.174 10.914 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.134 4.134 6 H 0.121 0.879 7 C 0.288 3.712 8 O -0.344 6.344 9 N -0.305 5.305 10 C 0.118 3.882 11 C -0.326 4.326 12 C 0.136 3.864 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.417 5.417 17 Si 0.740 3.260 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.244 4.244 22 C -0.049 4.049 23 N -0.273 5.273 24 C -0.167 4.167 25 C 0.313 3.687 26 O -0.436 6.436 27 N -0.369 5.369 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.241 0.759 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.141 0.859 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.124 5.896 10.436 16.353 hybrid contribution 1.912 -0.018 0.236 1.927 sum -9.212 5.878 10.672 15.274 Atomic orbital electron populations 1.22151 0.93896 1.03166 1.02969 1.21041 0.94882 0.96267 0.84756 0.90437 1.21788 0.93090 1.02964 0.97145 1.21496 0.98010 1.00348 0.93528 0.87917 1.20340 0.82500 0.79170 0.89152 1.90801 1.56795 1.47656 1.39113 1.43465 1.08577 1.60641 1.17818 1.17993 0.88991 0.94477 0.86728 1.21235 0.92213 1.15692 1.03500 1.17601 0.93667 0.85829 0.89307 1.19544 0.92653 1.43720 0.92715 0.90163 1.25968 1.00458 0.92270 0.95672 1.69739 1.37613 1.33879 1.00437 0.86235 0.81462 0.80290 0.77978 1.18727 1.20200 1.18911 1.22335 0.92343 1.06723 1.02953 1.21908 0.94193 0.95986 0.92863 1.67170 1.37411 1.19776 1.02932 1.21662 1.02166 1.01120 0.91794 1.20045 0.80086 0.77826 0.90720 1.90772 1.67595 1.53763 1.31502 1.45681 1.32505 1.46519 1.12186 0.92015 0.90552 0.91697 0.88480 0.90008 0.75921 0.88021 0.90567 0.85032 0.85879 0.87420 0.87448 0.76678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.40 37.15 0.35 -0.56 16 2 C 0.14 0.95 3.67 -68.38 -0.25 0.70 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -1.07 3.99 -26.60 -0.11 -1.17 16 5 C -0.11 -1.20 2.60 -91.56 -0.24 -1.44 16 6 H 0.10 0.90 8.13 -51.92 -0.42 0.48 16 7 C 0.50 8.20 7.09 -10.99 -0.08 8.12 16 8 O -0.47 -9.79 14.18 5.55 0.08 -9.71 16 9 N -0.66 -11.32 5.28 -11.49 -0.06 -11.38 16 10 C 0.35 7.81 7.40 -154.70 -1.15 6.67 16 11 C -0.30 -7.04 9.73 -38.48 -0.37 -7.41 16 12 C 0.14 3.73 5.60 -106.55 -0.60 3.13 16 13 C -0.46 -11.53 9.14 -37.65 -0.34 -11.87 16 14 H 0.08 1.93 7.87 -52.49 -0.41 1.51 16 15 C 0.08 1.81 5.31 -17.34 -0.09 1.71 16 16 N -0.79 -19.67 10.70 55.55 0.59 -19.07 16 17 Si 0.92 17.87 29.57 -169.99 -5.03 12.85 16 18 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 C -0.22 -5.64 8.77 -38.70 -0.34 -5.98 16 22 C 0.10 2.48 11.15 -17.68 -0.20 2.29 16 23 N -0.55 -13.69 7.89 -12.52 -0.10 -13.79 16 24 C -0.13 -1.36 5.23 -28.10 -0.15 -1.51 16 25 C 0.53 6.08 7.71 -11.87 -0.09 5.98 16 26 O -0.56 -8.64 17.78 5.56 0.10 -8.54 16 27 N -0.72 -6.13 5.12 -54.86 -0.28 -6.41 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.97 7.89 -51.93 -0.41 0.56 16 32 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.41 5.39 8.59 -40.82 -0.35 5.04 16 34 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 36 H 0.13 3.42 6.11 -52.49 -0.32 3.10 16 37 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 38 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.11 1.05 8.06 -51.93 -0.42 0.63 16 40 H 0.40 2.97 8.66 -40.82 -0.35 2.62 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -33.02 337.13 -8.47 -41.49 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.20 Total: 10.84 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -3.65 Total: -1.35 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.15 Total: -50.65 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.18 Total: -18.26 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.02 -8.47 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543584853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.528 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds