Wall clock time and date at job start Tue Mar 31 2020 08:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.29994 * 2 1 4 4 C 1.52909 * 109.31156 * 240.63779 * 2 1 3 5 5 C 1.53339 * 108.68885 * 188.95722 * 4 2 1 6 6 H 1.09009 * 109.70261 * 307.76522 * 5 4 2 7 7 C 1.50697 * 109.67820 * 187.25138 * 5 4 2 8 8 O 1.21287 * 119.99502 * 1.02725 * 7 5 4 9 9 N 1.34774 * 120.00370 * 181.03296 * 7 5 4 10 10 C 1.39475 * 119.99919 * 174.91265 * 9 7 5 11 11 C 1.38591 * 119.57772 * 174.65846 * 10 9 7 12 12 C 1.40812 * 118.79262 * 180.29249 * 11 10 9 13 13 C 1.41550 * 120.99405 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00124 * 26.26404 * 13 12 11 15 15 C 1.40034 * 119.99853 * 206.26072 * 13 12 11 16 16 N 1.30745 * 119.99973 * 9.82864 * 15 13 12 17 17 Si 1.86799 * 119.99972 * 189.82899 * 15 13 12 18 18 H 1.48507 * 109.47078 * 60.00124 * 17 15 13 19 19 H 1.48497 * 109.47211 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47015 * 300.00465 * 17 15 13 21 21 C 1.41177 * 118.01090 * 359.97438 * 12 11 10 22 22 C 1.37587 * 119.01082 * 359.97438 * 21 12 11 23 23 N 1.32075 * 121.11096 * 0.02562 * 22 21 12 24 24 C 1.53066 * 108.42794 * 67.51369 * 5 4 2 25 25 C 1.50173 * 109.89438 * 311.10039 * 24 5 4 26 26 O 1.21279 * 118.25142 * 197.55892 * 25 24 5 27 27 N 1.33356 * 123.50399 * 17.57966 * 25 24 5 28 28 H 1.08999 * 109.47454 * 300.41814 * 1 2 3 29 29 H 1.09000 * 109.47192 * 60.41413 * 1 2 3 30 30 H 1.09001 * 109.47360 * 180.41721 * 1 2 3 31 31 H 1.08994 * 109.60804 * 69.18324 * 4 2 1 32 32 H 1.09002 * 109.58199 * 308.70729 * 4 2 1 33 33 H 0.96994 * 119.99867 * 354.90024 * 9 7 5 34 34 H 1.07995 * 120.60770 * 0.24580 * 11 10 9 35 35 H 0.96997 * 119.99605 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.49406 * 180.02562 * 21 12 11 37 37 H 1.08000 * 119.44486 * 180.02562 * 22 21 12 38 38 H 1.08999 * 109.40378 * 71.23055 * 24 5 4 39 39 H 1.09004 * 109.40280 * 191.05751 * 24 5 4 40 40 H 0.97008 * 117.94755 * 177.77864 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8902 1.0287 0.0000 4 6 2.0356 -0.7076 -1.2577 5 6 3.5522 -0.8994 -1.1374 6 1 4.0257 0.0540 -0.9027 7 6 4.1009 -1.4322 -2.4358 8 8 3.3580 -1.6222 -3.3755 9 7 5.4170 -1.6976 -2.5529 10 6 5.9083 -2.2895 -3.7164 11 6 7.2749 -2.4571 -3.8742 12 6 7.7532 -3.0509 -5.0580 13 6 9.1396 -3.2441 -5.2680 14 1 9.8045 -3.3471 -4.4233 15 6 9.6490 -3.3016 -6.5712 16 7 8.8863 -2.9877 -7.5857 17 14 11.4182 -3.8267 -6.8601 18 1 11.6184 -5.2016 -6.3356 19 1 11.7098 -3.8044 -8.3160 20 1 12.3332 -2.8911 -6.1581 21 6 6.8085 -3.4479 -6.0292 22 6 5.4708 -3.2412 -5.7824 23 7 5.0629 -2.6805 -4.6584 24 6 3.8255 -1.9011 -0.0127 25 6 3.0497 -1.5162 1.2141 26 8 3.3848 -1.9923 2.2780 27 7 2.0118 -0.6791 1.1962 28 1 -0.3634 0.5203 0.8862 29 1 -0.3633 0.5074 -0.8937 30 1 -0.3634 -1.0276 0.0075 31 1 1.8122 -0.0996 -2.1343 32 1 1.5503 -1.6792 -1.3503 33 1 6.0226 -1.4769 -1.8281 34 1 7.9607 -2.1375 -3.1036 35 1 9.2393 -3.0272 -8.4882 36 1 7.1310 -3.9077 -6.9517 37 1 4.7421 -3.5426 -6.5204 38 1 3.5234 -2.8978 -0.3343 39 1 4.8905 -1.9030 0.2196 40 1 1.5481 -0.5120 2.0318 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543584853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:06 Heat of formation + Delta-G solvation = -69.572362 kcal Electronic energy + Delta-G solvation = -23998.448181 eV Core-core repulsion = 20390.508852 eV Total energy + Delta-G solvation = -3607.939329 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.88866 -40.88317 -39.57771 -37.78205 -36.25038 -35.37367 -34.36880 -32.58642 -32.06867 -30.34060 -28.17657 -27.92287 -25.86640 -23.69425 -23.34206 -23.06169 -21.10819 -20.24171 -19.67618 -18.43386 -18.00124 -17.75946 -17.23864 -16.85901 -16.44317 -16.08790 -15.97592 -15.78255 -15.55016 -15.12037 -14.91521 -14.63884 -14.29512 -14.18411 -13.96114 -13.59544 -13.19532 -13.09969 -12.86833 -12.84378 -12.56444 -12.39372 -12.11938 -12.07189 -11.91705 -11.86278 -11.45629 -11.31424 -11.18923 -10.70899 -10.10751 -9.96221 -9.61869 -8.86924 -8.59332 -6.58772 0.75066 0.96825 1.40999 1.52933 1.53991 1.55853 1.85706 2.08169 2.20708 2.26651 2.82623 3.32753 3.52957 3.59774 3.70254 3.76575 3.97398 4.13672 4.21470 4.30356 4.45531 4.59284 4.66947 4.76181 4.85012 4.87430 4.94074 4.94720 5.03851 5.07901 5.19885 5.25649 5.36365 5.47802 5.64626 5.82396 5.96886 6.12163 6.28996 6.44295 6.62582 6.79794 6.83081 7.16243 7.29289 7.82856 8.28412 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.002877 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.143539 B = 9728.703484 C =10390.676847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.103 0.897 4 C -0.112 4.112 5 C -0.094 4.094 6 H 0.136 0.864 7 C 0.504 3.496 8 O -0.519 6.519 9 N -0.650 5.650 10 C 0.346 3.654 11 C -0.311 4.311 12 C 0.116 3.884 13 C -0.483 4.483 14 H 0.087 0.913 15 C 0.034 3.966 16 N -0.820 5.820 17 Si 0.991 3.009 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.257 1.257 21 C -0.242 4.242 22 C 0.096 3.904 23 N -0.574 5.574 24 C -0.124 4.124 25 C 0.529 3.471 26 O -0.601 6.601 27 N -0.703 5.703 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.425 0.575 34 H 0.123 0.877 35 H 0.291 0.709 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 7.525 12.219 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.121 0.879 4 C -0.150 4.150 5 C -0.115 4.115 6 H 0.153 0.847 7 C 0.291 3.709 8 O -0.391 6.391 9 N -0.298 5.298 10 C 0.117 3.883 11 C -0.337 4.337 12 C 0.108 3.892 13 C -0.514 4.514 14 H 0.105 0.895 15 C -0.182 4.182 16 N -0.446 5.446 17 Si 0.811 3.189 18 H -0.183 1.183 19 H -0.193 1.193 20 H -0.181 1.181 21 C -0.266 4.266 22 C -0.055 4.055 23 N -0.294 5.294 24 C -0.164 4.164 25 C 0.316 3.684 26 O -0.484 6.484 27 N -0.354 5.354 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -10.913 7.293 11.778 17.635 hybrid contribution 1.729 -0.394 -0.176 1.782 sum -9.184 6.899 11.601 16.326 Atomic orbital electron populations 1.22141 0.92504 1.02987 1.04281 1.21154 0.95887 0.96638 0.82600 0.87887 1.21803 0.92012 1.02594 0.98592 1.21452 0.98801 1.01269 0.89984 0.84659 1.21280 0.81512 0.77691 0.90453 1.90785 1.57673 1.49377 1.41297 1.43487 1.09698 1.59903 1.16683 1.18291 0.88898 0.93454 0.87632 1.21440 0.93096 1.15665 1.03449 1.18015 0.94361 0.86451 0.90392 1.19872 0.92786 1.44872 0.93861 0.89525 1.26886 1.04914 0.91532 0.94882 1.69807 1.39695 1.33997 1.01119 0.85110 0.75721 0.79854 0.78200 1.18324 1.19319 1.18129 1.22286 0.92990 1.08305 1.03008 1.22182 0.94240 0.95641 0.93414 1.67295 1.38070 1.20607 1.03478 1.21621 1.02938 1.00459 0.91370 1.20046 0.80486 0.77833 0.90031 1.90761 1.69095 1.55676 1.32842 1.45656 1.31305 1.45258 1.13205 0.90261 0.89698 0.92684 0.88652 0.91541 0.73631 0.85916 0.89815 0.86236 0.84317 0.88516 0.86292 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.40 71.98 0.68 -0.65 16 2 C 0.14 1.53 3.67 45.10 0.17 1.70 16 3 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.11 -1.91 3.99 30.68 0.12 -1.79 16 5 C -0.09 -1.80 2.60 -11.41 -0.03 -1.83 16 6 H 0.14 1.82 8.13 -2.38 -0.02 1.80 16 7 C 0.50 15.84 7.09 87.66 0.62 16.46 16 8 O -0.52 -21.40 14.18 -3.05 -0.04 -21.45 16 9 N -0.65 -21.61 5.28 -308.65 -1.63 -23.24 16 10 C 0.35 15.64 7.40 132.75 0.98 16.62 16 11 C -0.31 -14.62 9.73 22.98 0.22 -14.39 16 12 C 0.12 6.13 5.60 -21.11 -0.12 6.01 16 13 C -0.48 -24.74 9.14 23.52 0.21 -24.53 16 14 H 0.09 4.16 7.87 -2.91 -0.02 4.14 16 15 C 0.03 1.64 5.31 85.29 0.45 2.09 16 16 N -0.82 -41.38 10.70 21.84 0.23 -41.15 16 17 Si 0.99 36.13 29.57 68.60 2.03 38.16 16 18 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 19 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 20 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 21 C -0.24 -12.83 8.77 22.84 0.20 -12.63 16 22 C 0.10 4.84 11.15 84.50 0.94 5.78 16 23 N -0.57 -28.83 7.89 -193.54 -1.53 -30.35 16 24 C -0.12 -2.44 5.23 29.70 0.16 -2.28 16 25 C 0.53 11.27 7.71 87.71 0.68 11.95 16 26 O -0.60 -18.05 17.78 -3.03 -0.05 -18.10 16 27 N -0.70 -10.19 5.12 -446.67 -2.29 -12.48 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 1.73 7.89 -2.39 -0.02 1.71 16 32 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 33 H 0.43 10.45 8.59 -92.71 -0.80 9.65 16 34 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 35 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 36 H 0.12 6.50 6.11 -2.91 -0.02 6.48 16 37 H 0.14 6.27 8.06 -2.91 -0.02 6.25 16 38 H 0.10 2.16 8.09 -2.39 -0.02 2.14 16 39 H 0.12 2.07 8.06 -2.38 -0.02 2.05 16 40 H 0.41 4.99 8.66 -92.70 -0.80 4.18 16 Total: -1.00 -73.52 337.13 1.50 -72.02 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.51 Total: 34.08 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.29 Total: 2.50 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -5.21 Total: -107.22 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -0.10 Total: -39.55 kcal Atomic # 14 Polarization: 36.13 SS G_CDS: 2.03 Total: 38.16 kcal Total: -73.52 1.50 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543584853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.449 kcal (2) G-P(sol) polarization free energy of solvation -73.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds