Wall clock time and date at job start Tue Mar 31 2020 08:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99797 * 2 1 4 4 N 1.46496 * 109.47154 * 125.00166 * 3 2 1 5 5 C 1.46494 * 120.00211 * 85.03251 * 4 3 2 6 6 C 1.50707 * 109.46845 * 96.52492 * 5 4 3 7 7 H 1.08001 * 119.99954 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99751 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00304 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99780 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47083 * 0.02562 * 10 8 6 12 12 H 1.48509 * 109.46719 * 120.00127 * 10 8 6 13 13 H 1.48494 * 109.47613 * 240.00091 * 10 8 6 14 14 C 1.34779 * 119.99806 * 265.03775 * 4 3 2 15 15 O 1.21472 * 120.00270 * 5.73586 * 14 4 3 16 16 C 1.48456 * 120.00009 * 185.73413 * 14 4 3 17 17 C 1.39179 * 120.51857 * 175.59275 * 16 14 4 18 18 C 1.39595 * 118.20535 * 180.02562 * 17 16 14 19 19 O 1.35518 * 120.49223 * 180.02562 * 18 17 16 20 20 N 1.32675 * 119.02050 * 0.02562 * 18 17 16 21 21 C 1.31855 * 120.93582 * 359.97438 * 20 18 17 22 22 C 1.50702 * 119.00604 * 180.02562 * 21 20 18 23 23 C 1.52993 * 117.49720 * 8.75435 * 22 21 20 24 24 C 1.52994 * 117.50131 * 300.09284 * 22 21 20 25 25 N 1.31561 * 121.99148 * 359.72506 * 21 20 18 26 26 H 1.08003 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.00130 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99847 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47211 * 5.00028 * 3 2 1 30 30 H 1.09000 * 109.46942 * 245.00025 * 3 2 1 31 31 H 1.09002 * 109.47782 * 216.52551 * 5 4 3 32 32 H 1.09005 * 109.47273 * 336.52674 * 5 4 3 33 33 H 0.97001 * 120.00136 * 179.97438 * 9 8 6 34 34 H 1.07995 * 120.89602 * 359.97438 * 17 16 14 35 35 H 0.96700 * 113.99915 * 89.99890 * 19 18 17 36 36 H 1.09000 * 115.54542 * 154.42319 * 22 21 20 37 37 H 1.08998 * 117.49906 * 359.97438 * 23 22 21 38 38 H 1.08999 * 117.50066 * 145.01891 * 23 22 21 39 39 H 1.09002 * 117.50448 * 214.97600 * 24 22 21 40 40 H 1.09010 * 117.49987 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3219 0.7276 1.0021 6 6 5.3280 1.7949 0.6559 7 1 5.0098 2.8209 0.5438 8 6 6.6545 1.4616 0.4822 9 7 7.0421 0.2123 0.6192 10 14 7.9014 2.7845 0.0524 11 1 7.2160 4.0984 -0.0433 12 1 8.9426 2.8455 1.1096 13 1 8.5370 2.4612 -1.2502 14 6 2.6276 1.9126 2.2912 15 8 1.4925 2.3207 2.4344 16 6 3.6116 2.0535 3.3939 17 6 3.2729 2.7319 4.5610 18 6 4.2355 2.8360 5.5666 19 8 3.9552 3.4860 6.7222 20 7 5.4289 2.2890 5.3744 21 6 5.7109 1.6541 4.2537 22 6 7.0802 1.0487 4.0815 23 6 8.0020 1.0280 5.3024 24 6 8.2830 1.9919 4.1470 25 7 4.8312 1.5282 3.2836 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 4.6008 0.2577 1.9453 32 1 4.3038 -0.0243 0.2131 33 1 7.9753 -0.0223 0.4966 34 1 2.2922 3.1668 4.6849 35 1 3.5847 2.9191 7.4125 36 1 7.1383 0.2060 3.3926 37 1 7.6183 1.4527 6.2300 38 1 8.6670 0.1720 5.4166 39 1 9.1328 1.7696 3.5015 40 1 8.0840 3.0506 4.3142 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568652518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:51 Heat of formation + Delta-G solvation = 30.316114 kcal Electronic energy + Delta-G solvation = -25429.285697 eV Core-core repulsion = 21825.677857 eV Total energy + Delta-G solvation = -3603.607839 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.44698 -40.61869 -38.89237 -37.61541 -37.21024 -35.20868 -34.20188 -33.58184 -32.31582 -29.21373 -27.99232 -26.09103 -25.63192 -24.65625 -23.22189 -22.81379 -21.01739 -20.41927 -19.74245 -19.11265 -18.43086 -17.59489 -17.22532 -16.91064 -16.63379 -16.52301 -16.29379 -15.95808 -15.51918 -15.27250 -14.85976 -14.64278 -14.22241 -14.14504 -13.53908 -13.23958 -13.08573 -13.00876 -12.75983 -12.55743 -12.38773 -12.23134 -12.03418 -11.76993 -11.62347 -11.52405 -11.45744 -11.43862 -11.23785 -10.43639 -10.39074 -10.23906 -9.81480 -9.46688 -8.00630 -6.03915 -0.56022 -0.15365 1.26972 1.37864 1.43283 1.48697 1.64179 2.09832 2.34832 2.49370 2.60626 2.77080 3.19333 3.28900 3.33837 3.74564 3.86908 3.99287 4.02346 4.16165 4.16605 4.20224 4.33646 4.52045 4.61593 4.76521 4.77945 4.93613 4.95724 5.03942 5.12897 5.24836 5.37866 5.53336 5.68394 5.78863 5.82697 5.88646 5.95136 6.29229 6.45556 6.51486 6.91208 7.02396 7.17263 7.57988 9.06638 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.007755 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.779998 B = 3609.510956 C = 5561.747624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.182 4.182 3 C 0.138 3.862 4 N -0.571 5.571 5 C 0.248 3.752 6 C -0.505 4.505 7 H 0.026 0.974 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.913 3.087 11 H -0.292 1.292 12 H -0.266 1.266 13 H -0.283 1.283 14 C 0.561 3.439 15 O -0.571 6.571 16 C 0.127 3.873 17 C -0.196 4.196 18 C 0.359 3.641 19 O -0.470 6.470 20 N -0.531 5.531 21 C 0.354 3.646 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.158 4.158 25 N -0.441 5.441 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.171 0.829 35 H 0.429 0.571 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 -0.598 8.415 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.201 4.201 3 C 0.016 3.984 4 N -0.299 5.299 5 C 0.128 3.872 6 C -0.544 4.544 7 H 0.045 0.955 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.741 3.259 11 H -0.217 1.217 12 H -0.191 1.191 13 H -0.209 1.209 14 C 0.347 3.653 15 O -0.452 6.452 16 C -0.020 4.020 17 C -0.220 4.220 18 C 0.169 3.831 19 O -0.280 6.280 20 N -0.257 5.257 21 C 0.088 3.912 22 C -0.126 4.126 23 C -0.164 4.164 24 C -0.197 4.197 25 N -0.157 5.157 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.188 0.812 35 H 0.292 0.708 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.361 -0.408 8.071 8.752 hybrid contribution -0.126 0.908 -0.342 0.978 sum -3.487 0.500 7.729 8.494 Atomic orbital electron populations 1.23998 0.95029 1.02877 0.98053 1.23193 0.96784 0.98014 1.02124 1.20662 0.92064 0.96632 0.89066 1.48286 1.17464 1.53062 1.11038 1.19711 0.76006 0.92739 0.98772 1.21178 0.93384 0.93264 1.46614 0.95536 1.24979 0.98360 0.96023 0.95242 1.69956 1.16783 1.16905 1.49918 0.86239 0.80976 0.80346 0.78377 1.21747 1.19114 1.20904 1.17958 0.85870 0.78713 0.82765 1.90652 1.19801 1.52738 1.81997 1.21637 0.91801 0.94649 0.93899 1.22959 1.03020 1.01695 0.94321 1.19236 0.87180 0.88222 0.88440 1.84706 1.84599 1.36339 1.22388 1.67570 1.21495 1.10934 1.25669 1.22375 0.95605 0.90111 0.83131 1.20629 0.84192 1.02878 1.04894 1.23092 0.99650 1.01450 0.92195 1.22886 0.97575 0.96360 1.02862 1.69171 1.00675 1.18733 1.27134 0.88134 0.86301 0.87509 0.90196 0.89582 0.91166 0.96950 0.92802 0.81151 0.70764 0.85844 0.87176 0.86032 0.88177 0.89944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.26 14.32 67.78 0.97 -3.28 16 2 C -0.18 -5.77 9.84 25.64 0.25 -5.52 16 3 C 0.14 5.06 5.83 85.63 0.50 5.55 16 4 N -0.57 -24.66 2.46 -833.23 -2.05 -26.71 16 5 C 0.25 11.89 4.78 85.64 0.41 12.30 16 6 C -0.51 -26.23 7.68 25.60 0.20 -26.03 16 7 H 0.03 1.47 7.81 -2.91 -0.02 1.45 16 8 C 0.06 2.82 5.46 84.65 0.46 3.28 16 9 N -0.90 -46.15 13.29 21.45 0.28 -45.87 16 10 Si 0.91 41.78 29.54 68.60 2.03 43.81 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 C 0.56 24.30 7.61 86.97 0.66 24.96 16 15 O -0.57 -25.01 15.99 -3.63 -0.06 -25.06 16 16 C 0.13 5.24 6.60 41.88 0.28 5.51 16 17 C -0.20 -6.69 9.68 22.82 0.22 -6.46 16 18 C 0.36 11.25 7.84 84.89 0.67 11.91 16 19 O -0.47 -10.93 13.58 -88.21 -1.20 -12.13 16 20 N -0.53 -18.52 9.35 -300.78 -2.81 -21.33 16 21 C 0.35 13.95 7.31 138.80 1.01 14.96 16 22 C -0.11 -3.87 6.23 -11.54 -0.07 -3.95 16 23 C -0.13 -3.48 10.01 30.62 0.31 -3.18 16 24 C -0.16 -5.21 10.24 30.62 0.31 -4.90 16 25 N -0.44 -19.15 4.95 -177.26 -0.88 -20.03 16 26 H 0.10 2.56 7.84 -2.91 -0.02 2.54 16 27 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 28 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.08 2.88 7.01 -2.39 -0.02 2.86 16 30 H 0.09 3.13 8.11 -2.39 -0.02 3.11 16 31 H 0.07 3.56 5.52 -2.39 -0.01 3.55 16 32 H 0.01 0.63 8.02 -2.38 -0.02 0.61 16 33 H 0.26 12.91 8.31 -92.71 -0.77 12.14 16 34 H 0.17 5.19 7.74 -2.91 -0.02 5.17 16 35 H 0.43 4.85 9.06 -74.06 -0.67 4.18 16 36 H 0.12 5.10 8.14 -2.39 -0.02 5.09 16 37 H 0.11 2.92 7.53 -2.39 -0.02 2.90 16 38 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -62.04 349.52 1.90 -60.14 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.40 Total: 22.01 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: 6.18 Total: 25.16 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -5.45 Total: -113.93 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.26 Total: -37.19 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -62.04 1.90 -60.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568652518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.457 kcal (2) G-P(sol) polarization free energy of solvation -62.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds