Wall clock time and date at job start Tue Mar 31 2020 08:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35797 * 116.99978 * 2 1 4 4 C 1.38626 * 120.12205 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.05929 * 180.02562 * 4 3 2 6 6 C 1.38424 * 120.31526 * 359.97438 * 5 4 3 7 7 C 1.37970 * 120.23961 * 359.72030 * 6 5 4 8 8 C 1.39331 * 119.93671 * 0.58158 * 7 6 5 9 9 C 1.48299 * 120.15840 * 179.69633 * 8 7 6 10 10 N 1.30817 * 126.42595 * 179.69855 * 9 8 7 11 11 O 1.21290 * 110.08765 * 180.02562 * 10 9 8 12 12 C 1.33669 * 110.03848 * 359.97438 * 11 10 9 13 13 C 1.50695 * 126.42836 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47125 * 195.02445 * 13 12 11 15 15 C 1.53003 * 109.47087 * 75.02918 * 13 12 11 16 16 N 1.46898 * 109.47416 * 315.02483 * 13 12 11 17 17 C 1.46904 * 111.00202 * 205.00130 * 16 13 12 18 18 C 1.50697 * 109.46891 * 180.02562 * 17 16 13 19 19 H 1.07991 * 120.00449 * 359.72239 * 18 17 16 20 20 C 1.37885 * 119.99686 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 N 1.30976 * 107.13531 * 0.26342 * 12 11 10 27 27 H 1.08998 * 109.47315 * 60.00208 * 1 2 3 28 28 H 1.09005 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47238 * 300.00285 * 1 2 3 30 30 H 1.07993 * 119.97537 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.84648 * 179.97438 * 5 4 3 32 32 H 1.07993 * 119.88169 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.03413 * 180.29439 * 7 6 5 34 34 H 1.09002 * 109.46752 * 299.99756 * 15 13 12 35 35 H 1.08997 * 109.47384 * 59.99596 * 15 13 12 36 36 H 1.09004 * 109.46924 * 179.97438 * 15 13 12 37 37 H 1.00899 * 111.00328 * 328.95783 * 16 13 12 38 38 H 1.08998 * 109.47046 * 59.99771 * 17 16 13 39 39 H 1.09001 * 109.47014 * 299.99971 * 17 16 13 40 40 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2929 2.3742 0.0005 5 6 1.9214 3.6044 0.0000 6 6 3.3034 3.6829 -0.0005 7 6 4.0648 2.5323 0.0053 8 6 3.4416 1.2861 -0.0005 9 6 4.2552 0.0463 -0.0011 10 7 3.8013 -1.1807 -0.0007 11 8 4.7252 -1.9666 -0.0009 12 6 5.8877 -1.3069 -0.0020 13 6 7.2644 -1.9198 -0.0020 14 1 8.0001 -1.1606 0.2634 15 6 7.5782 -2.4689 -1.3952 16 7 7.3137 -3.0131 0.9778 17 6 8.6878 -3.2394 1.4454 18 6 8.6986 -4.3659 2.4464 19 1 7.7764 -4.8609 2.7123 20 6 9.8852 -4.7604 3.0275 21 7 9.8939 -5.7399 3.9051 22 14 11.4804 -3.9037 2.5681 23 1 11.7044 -2.7528 3.4794 24 1 12.6094 -4.8602 2.6919 25 1 11.3954 -3.4169 1.1677 26 7 5.6057 -0.0279 0.0032 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2144 2.3195 0.0005 31 1 1.3318 4.5092 0.0000 32 1 3.7875 4.6483 -0.0005 33 1 5.1428 2.5975 0.0096 34 1 6.8424 -3.2282 -1.6606 35 1 7.5416 -1.6577 -2.1223 36 1 8.5742 -2.9119 -1.3953 37 1 6.6932 -2.8326 1.7527 38 1 9.0658 -2.3315 1.9155 39 1 9.3216 -3.5008 0.5980 40 1 10.7288 -6.0176 4.3135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577722152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:22 Heat of formation + Delta-G solvation = 65.999194 kcal Electronic energy + Delta-G solvation = -23775.289101 eV Core-core repulsion = 20173.228597 eV Total energy + Delta-G solvation = -3602.060505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.31825 -40.43372 -37.72417 -36.85145 -35.61159 -33.20721 -32.22488 -30.97713 -30.45203 -29.72960 -27.62196 -26.82040 -24.78095 -24.30073 -22.54051 -22.20908 -21.31434 -20.35668 -18.43194 -17.85305 -17.55188 -16.76081 -16.44464 -16.01519 -15.93133 -15.41743 -14.96941 -14.84385 -14.18743 -13.99725 -13.88068 -13.66000 -13.26438 -12.61600 -12.51784 -12.33782 -12.22403 -12.06128 -11.92881 -11.83922 -11.70112 -11.41816 -11.36458 -11.21172 -10.90045 -10.75843 -10.55373 -10.16062 -9.84040 -9.34731 -9.07277 -8.64810 -8.41952 -7.78366 -6.09413 -4.08653 0.57551 1.08366 1.44759 2.47019 2.91988 3.03644 3.26509 3.34431 3.35100 3.46448 3.52780 4.00467 4.38173 4.46343 4.49887 4.76368 4.84903 4.85080 4.92263 4.96579 5.16568 5.22061 5.22871 5.26674 5.38173 5.42297 5.53053 5.69383 5.89837 5.93800 5.98516 6.07482 6.08971 6.21791 6.40497 6.42834 6.62231 6.86369 7.05020 7.44523 7.69644 8.03952 8.35154 8.55408 8.98720 9.50745 11.03646 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.002894 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.944011 B = 9673.408200 C =10064.104747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.292 6.292 3 C 0.159 3.841 4 C -0.215 4.215 5 C -0.064 4.064 6 C -0.162 4.162 7 C -0.038 4.038 8 C -0.051 4.051 9 C 0.204 3.796 10 N -0.357 5.357 11 O 0.097 5.903 12 C 0.195 3.805 13 C 0.172 3.828 14 H 0.083 0.917 15 C -0.138 4.138 16 N -0.667 5.667 17 C 0.164 3.836 18 C -0.519 4.519 19 H 0.081 0.919 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.265 1.265 26 N -0.482 5.482 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.342 0.658 38 H -0.014 1.014 39 H 0.035 0.965 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 18.689 -10.620 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.111 3.889 4 C -0.234 4.234 5 C -0.083 4.083 6 C -0.181 4.181 7 C -0.058 4.058 8 C -0.054 4.054 9 C -0.065 4.065 10 N -0.062 5.062 11 O 0.035 5.965 12 C -0.026 4.026 13 C 0.060 3.940 14 H 0.101 0.899 15 C -0.197 4.197 16 N -0.301 5.301 17 C 0.037 3.963 18 C -0.557 4.557 19 H 0.099 0.901 20 C -0.132 4.132 21 N -0.536 5.536 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.211 1.211 25 H -0.190 1.190 26 N -0.216 5.216 27 H 0.074 0.926 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.161 0.839 38 H 0.003 0.997 39 H 0.053 0.947 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.966 18.087 -10.968 27.116 hybrid contribution 0.864 1.184 0.528 1.558 sum -16.102 19.271 -10.440 27.196 Atomic orbital electron populations 1.23134 0.78340 1.04399 1.01147 1.86308 1.21214 1.25596 1.87253 1.19000 0.90835 0.85194 0.93907 1.21159 1.00220 0.91858 1.10128 1.21094 0.94760 0.97030 0.95372 1.21021 0.93737 0.98403 1.04896 1.21106 1.00944 0.89746 0.93965 1.16678 0.88140 0.89397 1.11141 1.23559 0.87585 0.92635 1.02764 1.75102 1.10496 1.01009 1.19576 1.85375 1.11991 1.34591 1.64571 1.29003 0.92826 0.85990 0.94750 1.20258 0.82802 0.93368 0.97550 0.89909 1.21844 1.03869 1.01084 0.92920 1.60787 1.12574 1.38552 1.18146 1.20147 0.84438 0.95964 0.95773 1.20982 0.96223 1.16408 1.22087 0.90062 1.24891 0.98844 0.94857 0.94600 1.69892 1.27256 1.28116 1.28316 0.86838 0.83602 0.79639 0.79526 1.20287 1.21078 1.18971 1.71956 1.11310 1.17046 1.21284 0.92613 0.87884 0.92557 0.84806 0.85306 0.85047 0.83986 0.91078 0.92547 0.90279 0.83944 0.99674 0.94747 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.29 -3.77 8.84 -19.11 -0.17 -3.94 16 3 C 0.16 1.99 6.69 -38.85 -0.26 1.73 16 4 C -0.21 -1.97 9.03 -39.47 -0.36 -2.32 16 5 C -0.06 -0.51 10.03 -39.55 -0.40 -0.90 16 6 C -0.16 -1.42 10.03 -39.61 -0.40 -1.81 16 7 C -0.04 -0.43 9.70 -39.27 -0.38 -0.81 16 8 C -0.05 -0.72 5.89 -104.76 -0.62 -1.33 16 9 C 0.20 3.40 7.78 -156.10 -1.21 2.19 16 10 N -0.36 -6.33 10.70 30.98 0.33 -6.00 16 11 O 0.10 1.70 11.29 18.04 0.20 1.91 16 12 C 0.20 3.27 6.98 -12.98 -0.09 3.18 16 13 C 0.17 2.83 3.16 -68.87 -0.22 2.62 16 14 H 0.08 1.33 7.80 -51.93 -0.40 0.92 16 15 C -0.14 -1.98 9.40 37.16 0.35 -1.64 16 16 N -0.67 -13.27 6.29 -109.22 -0.69 -13.96 16 17 C 0.16 3.77 4.31 -4.98 -0.02 3.75 16 18 C -0.52 -14.44 9.87 -34.44 -0.34 -14.78 16 19 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 22 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 26 N -0.48 -8.06 11.26 -9.88 -0.11 -8.17 16 27 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 31 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.57 7.88 -52.49 -0.41 1.15 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.14 7.45 -51.93 -0.39 0.76 16 37 H 0.34 6.86 8.34 -39.29 -0.33 6.54 16 38 H -0.01 -0.33 7.49 -51.93 -0.39 -0.71 16 39 H 0.03 0.79 6.48 -51.93 -0.34 0.45 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -32.55 342.68 -7.30 -39.85 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.09 Total: 2.38 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.05 Total: -7.06 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.31 Total: -54.55 kcal Atomic # 8 Polarization: -2.07 SS G_CDS: 0.03 Total: -2.03 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.55 -7.30 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577722152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.848 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds