Wall clock time and date at job start Tue Mar 31 2020 08:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35797 * 116.99978 * 2 1 4 4 C 1.38626 * 120.12205 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.05929 * 180.02562 * 4 3 2 6 6 C 1.38424 * 120.31526 * 359.97438 * 5 4 3 7 7 C 1.37970 * 120.23961 * 359.72030 * 6 5 4 8 8 C 1.39331 * 119.93671 * 0.58158 * 7 6 5 9 9 C 1.48299 * 120.15840 * 179.69633 * 8 7 6 10 10 N 1.30817 * 126.42595 * 179.69855 * 9 8 7 11 11 O 1.21290 * 110.08765 * 180.02562 * 10 9 8 12 12 C 1.33669 * 110.03848 * 359.97438 * 11 10 9 13 13 C 1.50695 * 126.42836 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47125 * 195.02445 * 13 12 11 15 15 C 1.53003 * 109.47087 * 75.02918 * 13 12 11 16 16 N 1.46898 * 109.47416 * 315.02483 * 13 12 11 17 17 C 1.46904 * 111.00202 * 205.00130 * 16 13 12 18 18 C 1.50697 * 109.46891 * 180.02562 * 17 16 13 19 19 H 1.07991 * 120.00449 * 359.72239 * 18 17 16 20 20 C 1.37885 * 119.99686 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00035 * 179.72339 * 20 18 17 22 22 Si 1.86803 * 119.99853 * 359.72191 * 20 18 17 23 23 H 1.48500 * 109.46986 * 90.00256 * 22 20 18 24 24 H 1.48496 * 109.47029 * 210.00273 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00102 * 22 20 18 26 26 N 1.30976 * 107.13531 * 0.26342 * 12 11 10 27 27 H 1.08998 * 109.47315 * 60.00208 * 1 2 3 28 28 H 1.09005 * 109.47461 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47238 * 300.00285 * 1 2 3 30 30 H 1.07993 * 119.97537 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.84648 * 179.97438 * 5 4 3 32 32 H 1.07993 * 119.88169 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.03413 * 180.29439 * 7 6 5 34 34 H 1.09002 * 109.46752 * 299.99756 * 15 13 12 35 35 H 1.08997 * 109.47384 * 59.99596 * 15 13 12 36 36 H 1.09004 * 109.46924 * 179.97438 * 15 13 12 37 37 H 1.00899 * 111.00328 * 328.95783 * 16 13 12 38 38 H 1.08998 * 109.47046 * 59.99771 * 17 16 13 39 39 H 1.09001 * 109.47014 * 299.99971 * 17 16 13 40 40 H 0.97000 * 119.99706 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2929 2.3742 0.0005 5 6 1.9214 3.6044 0.0000 6 6 3.3034 3.6829 -0.0005 7 6 4.0648 2.5323 0.0053 8 6 3.4416 1.2861 -0.0005 9 6 4.2552 0.0463 -0.0011 10 7 3.8013 -1.1807 -0.0007 11 8 4.7252 -1.9666 -0.0009 12 6 5.8877 -1.3069 -0.0020 13 6 7.2644 -1.9198 -0.0020 14 1 8.0001 -1.1606 0.2634 15 6 7.5782 -2.4689 -1.3952 16 7 7.3137 -3.0131 0.9778 17 6 8.6878 -3.2394 1.4454 18 6 8.6986 -4.3659 2.4464 19 1 7.7764 -4.8609 2.7123 20 6 9.8852 -4.7604 3.0275 21 7 9.8939 -5.7399 3.9051 22 14 11.4804 -3.9037 2.5681 23 1 11.7044 -2.7528 3.4794 24 1 12.6094 -4.8602 2.6919 25 1 11.3954 -3.4169 1.1677 26 7 5.6057 -0.0279 0.0032 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 0.2144 2.3195 0.0005 31 1 1.3318 4.5092 0.0000 32 1 3.7875 4.6483 -0.0005 33 1 5.1428 2.5975 0.0096 34 1 6.8424 -3.2282 -1.6606 35 1 7.5416 -1.6577 -2.1223 36 1 8.5742 -2.9119 -1.3953 37 1 6.6932 -2.8326 1.7527 38 1 9.0658 -2.3315 1.9155 39 1 9.3216 -3.5008 0.5980 40 1 10.7288 -6.0176 4.3135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577722152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:21 Heat of formation + Delta-G solvation = 41.904093 kcal Electronic energy + Delta-G solvation = -23776.333943 eV Core-core repulsion = 20173.228597 eV Total energy + Delta-G solvation = -3603.105347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.59921 -41.21084 -38.51121 -38.34099 -36.83653 -35.02264 -33.73029 -32.05347 -31.45068 -30.91195 -28.59655 -28.26556 -25.86935 -25.64403 -23.74442 -23.14925 -22.83978 -21.57149 -19.49563 -19.14840 -18.95299 -18.31336 -17.42594 -17.05181 -16.75529 -16.66768 -16.39667 -15.94080 -15.58514 -15.32451 -14.86445 -14.64460 -14.50481 -14.07303 -13.94421 -13.60214 -13.58612 -13.18507 -13.02557 -12.84511 -12.76811 -12.63625 -12.44885 -12.37456 -12.09487 -12.08254 -11.98099 -11.76357 -11.54444 -11.30339 -10.79918 -9.91178 -9.39931 -9.24758 -8.27519 -6.33210 -0.35947 0.22010 0.34309 1.35507 1.39970 1.41820 1.52768 1.70885 2.25103 2.30644 2.37345 2.72719 2.84435 3.06903 3.35145 3.63614 3.82757 3.99303 4.13124 4.16301 4.19767 4.31587 4.33562 4.36801 4.46609 4.52612 4.67508 4.69225 4.73135 4.83955 4.87190 4.93871 5.02991 5.17596 5.25719 5.34082 5.44259 5.52903 5.72027 5.82731 6.32045 6.33250 6.49736 6.74534 7.07271 7.30973 8.89309 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.024133 B = 0.002894 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.944011 B = 9673.408200 C =10064.104747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.143 3.857 4 C -0.212 4.212 5 C -0.050 4.050 6 C -0.158 4.158 7 C -0.047 4.047 8 C -0.096 4.096 9 C 0.207 3.793 10 N -0.380 5.380 11 O 0.078 5.922 12 C 0.194 3.806 13 C 0.176 3.824 14 H 0.095 0.905 15 C -0.134 4.134 16 N -0.676 5.676 17 C 0.175 3.825 18 C -0.530 4.530 19 H 0.035 0.965 20 C 0.007 3.993 21 N -0.949 5.949 22 Si 0.951 3.049 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.237 1.237 26 N -0.487 5.487 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.337 0.663 38 H -0.005 1.005 39 H 0.046 0.954 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 22.272 -12.092 30.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.095 3.905 4 C -0.231 4.231 5 C -0.068 4.068 6 C -0.176 4.176 7 C -0.067 4.067 8 C -0.099 4.099 9 C -0.062 4.062 10 N -0.088 5.088 11 O 0.020 5.980 12 C -0.027 4.027 13 C 0.065 3.935 14 H 0.113 0.887 15 C -0.193 4.193 16 N -0.308 5.308 17 C 0.047 3.953 18 C -0.569 4.569 19 H 0.054 0.946 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.774 3.226 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.160 1.160 26 N -0.221 5.221 27 H 0.093 0.907 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.180 0.820 33 H 0.156 0.844 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.155 0.845 38 H 0.013 0.987 39 H 0.064 0.936 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.182 21.663 -12.465 30.329 hybrid contribution 0.719 0.147 1.009 1.248 sum -16.463 21.809 -11.455 29.629 Atomic orbital electron populations 1.23396 0.76194 1.05375 1.02782 1.86256 1.23656 1.26574 1.87460 1.19272 0.90634 0.86176 0.94439 1.21530 1.01512 0.91121 1.08917 1.21616 0.94733 0.97982 0.92472 1.21405 0.94268 0.98559 1.03324 1.21223 1.01121 0.89908 0.94439 1.17038 0.89057 0.89130 1.14697 1.24168 0.87701 0.93364 1.00991 1.75095 1.10622 1.01602 1.21472 1.85345 1.12299 1.35044 1.65266 1.29068 0.92775 0.86160 0.94667 1.20342 0.82939 0.92668 0.97584 0.88726 1.21844 1.03732 1.01767 0.91931 1.60672 1.10927 1.40867 1.18376 1.19912 0.86257 0.94330 0.94805 1.21277 0.94715 1.17552 1.23306 0.94641 1.25909 1.03243 0.95552 0.94315 1.70062 1.28548 1.30277 1.30052 0.85660 0.77850 0.78393 0.80724 1.19377 1.20938 1.16043 1.71954 1.11661 1.16856 1.21630 0.90726 0.87448 0.90995 0.82055 0.81288 0.82045 0.84428 0.91604 0.90163 0.89953 0.84534 0.98697 0.93586 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.48 8.84 -91.28 -0.81 -9.29 16 3 C 0.14 3.47 6.69 22.75 0.15 3.63 16 4 C -0.21 -3.28 9.03 22.34 0.20 -3.08 16 5 C -0.05 -0.58 10.03 22.29 0.22 -0.36 16 6 C -0.16 -2.26 10.03 22.25 0.22 -2.03 16 7 C -0.05 -1.03 9.70 22.47 0.22 -0.81 16 8 C -0.10 -2.71 5.89 -19.95 -0.12 -2.83 16 9 C 0.21 7.08 7.78 137.23 1.07 8.15 16 10 N -0.38 -14.01 10.70 -59.05 -0.63 -14.65 16 11 O 0.08 2.87 11.29 74.61 0.84 3.71 16 12 C 0.19 6.58 6.98 88.35 0.62 7.20 16 13 C 0.18 5.67 3.16 44.17 0.14 5.81 16 14 H 0.10 2.87 7.80 -2.39 -0.02 2.85 16 15 C -0.13 -3.65 9.40 71.98 0.68 -2.97 16 16 N -0.68 -27.10 6.29 -499.46 -3.14 -30.24 16 17 C 0.17 7.92 4.31 85.56 0.37 8.29 16 18 C -0.53 -30.29 9.87 25.60 0.25 -30.03 16 19 H 0.04 2.28 8.06 -2.92 -0.02 2.26 16 20 C 0.01 0.42 5.47 84.66 0.46 0.88 16 21 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 22 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 26 N -0.49 -16.44 11.26 -302.44 -3.41 -19.85 16 27 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 28 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16 30 H 0.16 1.49 6.30 -2.91 -0.02 1.48 16 31 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 32 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.14 2.98 7.88 -2.91 -0.02 2.96 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.08 2.20 7.45 -2.39 -0.02 2.18 16 37 H 0.34 14.02 8.34 -89.69 -0.75 13.27 16 38 H 0.00 -0.20 7.49 -2.39 -0.02 -0.22 16 39 H 0.05 2.00 6.48 -2.39 -0.02 1.98 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.21 342.68 0.91 -73.31 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.27 Total: 18.28 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.60 Total: -6.80 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -6.88 Total: -123.69 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: 0.04 Total: -5.58 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -74.21 0.91 -73.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577722152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.211 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds