Wall clock time and date at job start Tue Mar 31 2020 08:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.53003 * 109.46624 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.46956 * 179.97438 * 8 7 5 10 10 H 1.08004 * 119.99792 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00025 * 179.97438 * 9 8 7 12 12 N 1.31518 * 119.99798 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00044 * 0.02562 * 11 9 8 14 14 H 1.48492 * 109.47331 * 89.99808 * 13 11 9 15 15 H 1.48502 * 109.46751 * 209.99831 * 13 11 9 16 16 H 1.48499 * 109.46888 * 329.99550 * 13 11 9 17 17 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 18 18 C 1.38717 * 119.78420 * 280.00676 * 17 2 1 19 19 C 1.37667 * 120.50190 * 179.97438 * 18 17 2 20 20 C 1.39704 * 119.77898 * 359.97438 * 19 18 17 21 21 N 1.35905 * 133.44949 * 180.02562 * 20 19 18 22 22 C 1.30755 * 109.62145 * 180.02562 * 21 20 19 23 23 O 1.35283 * 125.03303 * 180.02562 * 22 21 20 24 24 N 1.36379 * 109.93970 * 359.97438 * 22 21 20 25 25 H 0.97005 * 126.36828 * 180.02562 * 24 22 21 26 26 C 1.38450 * 107.26978 * 0.02562 * 24 22 21 27 27 C 1.37937 * 119.77763 * 99.72311 * 17 2 1 28 28 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 29 29 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 32 32 H 1.09001 * 109.46809 * 299.99238 * 7 5 4 33 33 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 34 34 H 1.09001 * 109.46782 * 299.99104 * 8 7 5 35 35 H 1.08993 * 109.47555 * 59.99547 * 8 7 5 36 36 H 0.97000 * 119.99465 * 180.02562 * 12 11 9 37 37 H 1.07994 * 119.75052 * 359.94852 * 18 17 2 38 38 H 1.07999 * 120.11132 * 179.97438 * 19 18 17 39 39 H 0.96698 * 114.00513 * 90.01988 * 23 22 21 40 40 H 1.07998 * 120.07894 * 0.02562 * 27 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 2.6955 0.2531 4.7602 9 6 3.1914 -0.4589 5.9923 10 1 3.4437 -1.5080 5.9449 11 6 3.3229 0.2288 7.1800 12 7 3.7552 -0.3927 8.2554 13 14 2.8858 2.0431 7.2620 14 1 1.4529 2.1913 7.6222 15 1 3.7260 2.7086 8.2899 16 1 3.1313 2.6717 5.9392 17 6 2.0324 -0.7105 -1.2304 18 6 2.0648 -2.0970 -1.2606 19 6 2.5204 -2.7611 -2.3770 20 6 2.9529 -2.0339 -3.4887 21 7 3.4433 -2.3898 -4.7052 22 6 3.7065 -1.3162 -5.4037 23 8 4.2072 -1.3107 -6.6604 24 7 3.4006 -0.2027 -4.6781 25 1 3.5021 0.7178 -4.9668 26 6 2.9182 -0.6302 -3.4528 27 6 2.4514 0.0222 -2.3215 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.2490 -1.6319 1.1526 32 1 1.9668 -1.5493 3.8328 33 1 3.6414 -1.1266 3.4024 34 1 3.3719 1.0725 4.5167 35 1 1.6973 0.6491 4.9468 36 1 3.8474 0.0911 9.0910 37 1 1.7306 -2.6596 -0.4015 38 1 2.5433 -3.8408 -2.3935 39 1 3.5323 -1.3203 -7.3528 40 1 2.4197 1.1013 -2.2933 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589692342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:31 Heat of formation + Delta-G solvation = -11.643343 kcal Electronic energy + Delta-G solvation = -23315.123675 eV Core-core repulsion = 19709.696337 eV Total energy + Delta-G solvation = -3605.427338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.53879 -39.77526 -38.61327 -37.34096 -34.81321 -33.57474 -33.45956 -31.64561 -30.79458 -30.05257 -28.45323 -26.13458 -23.99371 -23.42590 -22.13017 -21.71159 -20.68167 -19.82298 -19.35209 -17.86574 -17.63521 -17.23217 -16.49050 -16.03613 -15.69328 -15.03561 -14.87233 -14.59665 -14.36526 -14.23903 -14.00954 -13.57792 -13.28587 -13.14994 -12.60509 -12.54335 -12.28516 -12.10504 -12.01262 -11.64691 -11.40019 -11.17928 -11.09415 -10.94238 -10.41673 -10.14883 -10.02992 -9.77583 -9.25475 -9.15750 -8.95692 -8.76533 -8.49389 -8.40771 -6.01616 -4.00209 0.45258 1.09267 1.90901 2.21066 3.12088 3.29679 3.34879 3.38710 3.45257 3.55632 3.56052 4.07254 4.39836 4.52013 4.62004 4.82585 4.92408 4.99345 5.07803 5.20672 5.33849 5.34087 5.43787 5.57790 5.66847 5.81610 5.89759 6.00218 6.08780 6.11181 6.14422 6.21391 6.26288 6.43253 6.65603 6.71635 7.11245 7.32132 7.37943 7.45196 7.75621 7.81350 8.51466 8.65710 9.01775 9.61459 11.11224 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.030623 B = 0.002427 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.124403 B =11536.236808 C =11676.184188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.184 3.816 3 H 0.095 0.905 4 N -0.736 5.736 5 C 0.513 3.487 6 O -0.540 6.540 7 C -0.123 4.123 8 C 0.002 3.998 9 C -0.524 4.524 10 H 0.073 0.927 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C -0.063 4.063 18 C -0.115 4.115 19 C -0.058 4.058 20 C 0.055 3.945 21 N -0.485 5.485 22 C 0.450 3.550 23 O -0.443 6.443 24 N -0.602 5.602 25 H 0.423 0.577 26 C 0.061 3.939 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.410 0.590 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -1.721 -30.439 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.079 3.921 3 H 0.113 0.887 4 N -0.391 5.391 5 C 0.302 3.698 6 O -0.416 6.416 7 C -0.163 4.163 8 C -0.036 4.036 9 C -0.562 4.562 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C -0.065 4.065 18 C -0.136 4.136 19 C -0.077 4.077 20 C -0.062 4.062 21 N -0.216 5.216 22 C 0.146 3.854 23 O -0.245 6.245 24 N -0.227 5.227 25 H 0.263 0.737 26 C -0.048 4.048 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.268 0.732 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.311 -1.721 -30.288 30.641 hybrid contribution -0.428 1.764 -0.330 1.844 sum -4.738 0.043 -30.618 30.982 Atomic orbital electron populations 1.22167 0.94194 1.02523 1.02708 1.19667 0.94179 0.96784 0.81511 0.88694 1.46327 1.69268 1.14111 1.09398 1.21545 0.76175 0.87545 0.84573 1.90647 1.49403 1.16494 1.85055 1.21677 1.01800 1.00615 0.92175 1.19365 0.97512 0.94586 0.92153 1.21123 1.44308 0.98176 0.92625 0.90916 1.24981 0.94488 0.98288 0.95561 1.69917 1.47002 1.36681 1.00661 0.86790 0.78581 0.85830 0.78314 1.20262 1.21495 1.18537 1.19715 0.98469 0.93716 0.94605 1.20745 1.01153 0.93469 0.98184 1.20257 0.97528 1.00013 0.89951 1.18815 1.03659 0.90367 0.93406 1.70676 1.20160 1.25838 1.04951 1.20334 0.96351 0.81689 0.87061 1.84844 1.34625 1.94543 1.10439 1.43406 1.55520 1.10000 1.13748 0.73734 1.18536 1.03298 0.95135 0.87816 1.19709 1.02120 0.99730 0.90513 0.91276 0.91866 0.92128 0.76585 0.89535 0.89558 0.95867 0.96269 0.92744 0.84764 0.84668 0.73158 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.46 37.16 0.35 -1.26 16 2 C 0.18 2.04 2.77 -69.08 -0.19 1.85 16 3 H 0.10 1.20 7.43 -51.93 -0.39 0.81 16 4 N -0.74 -9.28 5.02 -54.93 -0.28 -9.56 16 5 C 0.51 8.95 7.79 -10.98 -0.09 8.86 16 6 O -0.54 -11.46 15.65 5.56 0.09 -11.38 16 7 C -0.12 -2.33 5.64 -27.88 -0.16 -2.48 16 8 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 9 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 10 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 11 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 13 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 16 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 17 C -0.06 -0.60 4.96 -104.55 -0.52 -1.12 16 18 C -0.11 -1.00 9.02 -39.61 -0.36 -1.36 16 19 C -0.06 -0.55 10.10 -39.24 -0.40 -0.95 16 20 C 0.06 0.61 7.22 -84.68 -0.61 0.00 16 21 N -0.48 -5.59 11.31 -12.24 -0.14 -5.72 16 22 C 0.45 3.93 9.39 -88.93 -0.84 3.09 16 23 O -0.44 -2.58 13.63 -17.54 -0.24 -2.82 16 24 N -0.60 -4.40 6.26 -11.90 -0.07 -4.48 16 25 H 0.42 1.71 8.96 -40.82 -0.37 1.34 16 26 C 0.06 0.58 7.30 -83.87 -0.61 -0.03 16 27 C -0.10 -0.90 9.67 -39.53 -0.38 -1.28 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.40 3.98 6.85 -40.82 -0.28 3.70 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 35 H 0.02 0.49 7.52 -51.93 -0.39 0.10 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.13 0.92 6.89 -52.49 -0.36 0.56 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.41 0.08 9.06 45.56 0.41 0.49 16 40 H 0.13 0.94 8.03 -52.49 -0.42 0.52 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -37.73 342.79 -7.98 -45.70 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.29 Total: 0.54 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.32 Total: -8.10 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.28 Total: -47.01 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.15 Total: -14.19 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -37.73 -7.98 -45.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589692342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.060 kcal (2) G-P(sol) polarization free energy of solvation -37.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds